| Year |
Citation |
Score |
| 2019 |
Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A. Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial cells. Proteomics. e1800315. PMID 30983154 DOI: 10.1002/Pmic.201800315 |
0.478 |
|
| 2018 |
Wu X, Zahari MS, Renuse S, Sahasrabuddhe NA, Chaerkady R, Kim MS, Fackler MJ, Stampfer M, Gabrielson E, Sukumar S, Pandey A. Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts. Clinical Proteomics. 15: 21. PMID 29946230 DOI: 10.1186/S12014-018-9197-X |
0.345 |
|
| 2018 |
Lee SE, Song J, Bösl K, Müller AC, Vitko D, Bennett KL, Superti-Furga G, Pandey A, Kandasamy RK, Kim MS. Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines. Proteomics. PMID 29474001 DOI: 10.1002/Pmic.201700386 |
0.461 |
|
| 2018 |
Lee S, Song J, Bösl K, Müller AC, Vitko D, Bennett KL, Superti-Furga G, Pandey A, Kandasamy RK, Kim M. Front Cover: Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines Proteomics. 18: 1870061. DOI: 10.1002/Pmic.201870061 |
0.433 |
|
| 2017 |
Na CH, Barbhuiya M, Kim MS, Verbruggen S, Eacker S, Pletnikova O, Troncoso J, Halushka M, Menschaert G, Overall C, Pandey A. Discovery of non-canonical translation initiation sites through mass spectrometric analysis of protein N-termini. Genome Research. PMID 29162641 DOI: 10.1101/Gr.226050.117 |
0.373 |
|
| 2017 |
McCall MN, Kim MS, Adil M, Patil AH, Lu Y, Mitchell CJ, Leal-Rojas P, Xu J, Kumar M, Dawson VL, Dawson TM, Baras AS, Rosenberg AZ, Arking DE, Burns KH, et al. Toward the human cellular microRNAome. Genome Research. PMID 28877962 DOI: 10.1101/Gr.222067.117 |
0.364 |
|
| 2016 |
Cha SJ, Kim MS, Pandey A, Jacobs-Lorena M. Identification of GAPDH on the surface of Plasmodium sporozoites as a new candidate for targeting malaria liver invasion. The Journal of Experimental Medicine. PMID 27551151 DOI: 10.1084/Jem.20160059 |
0.32 |
|
| 2016 |
Mitchell CJ, Kim MS, Na CH, Pandey A. PyQuant: a versatile framework for analysis of quantitative mass spectrometry data. Molecular & Cellular Proteomics : McP. PMID 27231314 DOI: 10.1074/Mcp.O115.056879 |
0.441 |
|
| 2016 |
Mitchell CJ, Kim MS, Zhong J, Nirujogi RS, Bose AK, Pandey A. Unbiased identification of substrates of protein tyrosine phosphatase ptp-3 in C. elegans. Molecular Oncology. PMID 27067626 DOI: 10.1016/J.Molonc.2016.03.003 |
0.349 |
|
| 2016 |
Jhaveri DT, Kim MS, Thompson ED, Huang L, Sharma R, Klein AP, Zheng L, Le DT, Laheru DA, Pandey A, Jaffee EM, Anders RA. Using Quantitative Seroproteomics to Identify Antibody Biomarkers in Pancreatic Cancer. Cancer Immunology Research. PMID 26842750 DOI: 10.1158/2326-6066.Cir-15-0200-T |
0.351 |
|
| 2015 |
Kim MS, Zhong J, Pandey A. Common errors in mass spectrometry-based analysis of post-translational modifications. Proteomics. PMID 26667783 DOI: 10.1002/Pmic.201500355 |
0.36 |
|
| 2015 |
Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, et al. A multi-omic analysis of human naïve CD4+ T cells. Bmc Systems Biology. 9: 75. PMID 26542228 DOI: 10.1186/S12918-015-0225-4 |
0.372 |
|
| 2015 |
Wu X, Zahari MS, Ma B, Liu R, Renuse S, Sahasrabuddhe NA, Chen L, Chaerkady R, Kim MS, Zhong J, Jelinek C, Barbhuiya MA, Leal-Rojas P, Yang Y, Kashyap MK, et al. Global phosphotyrosine survey in triple-negative breast cancer reveals activation of multiple tyrosine kinase signaling pathways. Oncotarget. PMID 26356563 DOI: 10.18632/Oncotarget.5020 |
0.373 |
|
| 2015 |
Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A. Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer. Molecular & Cellular Proteomics : McP. 14: 2887-900. PMID 26330541 DOI: 10.1074/Mcp.M115.050484 |
0.358 |
|
| 2015 |
Zahari MS, Wu X, Pinto SM, Nirujogi RS, Kim MS, Fetics B, Philip M, Barnes SR, Godfrey B, Gabrielson E, Nevo E, Pandey A. Phosphoproteomic profiling of tumor tissues identifies HSP27 Ser82 phosphorylation as a robust marker of early ischemia. Scientific Reports. 5: 13660. PMID 26329039 DOI: 10.1038/Srep13660 |
0.352 |
|
| 2015 |
Zahari MS, Wu X, Blair BG, Pinto SM, Nirujogi RS, Jelinek CA, Malhotra R, Kim MS, Park BH, Pandey A. Activating mutations in PIK3CA lead to widespread modulation of the tyrosine phosphoproteome. Journal of Proteome Research. PMID 26267517 DOI: 10.1021/Acs.Jproteome.5B00302 |
0.358 |
|
| 2015 |
Ewing AD, Gacita A, Wood LD, Ma F, Xing D, Kim MS, Manda SS, Abril G, Pereira G, Makohon-Moore A, Looijenga LH, Gillis AJ, Hruban RH, Anders RA, Romans KE, et al. Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution. Genome Research. PMID 26260970 DOI: 10.1101/Gr.196238.115 |
0.326 |
|
| 2015 |
Zhang X, Belkina N, Jacob HK, Maity T, Biswas R, Venugopalan A, Shaw PG, Kim MS, Chaerkady R, Pandey A, Guha U. Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics. Proteomics. 15: 340-55. PMID 25404012 DOI: 10.1002/Pmic.201400315 |
0.351 |
|
| 2015 |
Nirujogi RS, Wright JD, Manda SS, Zhong J, Na CH, Meyerhoff J, Benton B, Jabbour R, Willis K, Kim MS, Pandey A, Sekowski JW. Phosphoproteomic analysis reveals compensatory effects in the piriform cortex of VX nerve agent exposed rats. Proteomics. 15: 487-99. PMID 25403869 DOI: 10.1002/Pmic.201400371 |
0.366 |
|
| 2015 |
Zahari MS, Wu X, Pinto SM, Nirujogi RS, Kim MS, Fetics B, Philip M, Barnes SR, Godfrey B, Gabrielson E, Nevo E, Pandey A. Phosphoproteomic profiling of tumor tissues identifies HSP27 Ser82 phosphorylation as a robust marker of early ischemia Scientific Reports. 5. DOI: 10.1038/srep13660 |
0.318 |
|
| 2014 |
Heydarian M, Luperchio TR, Cutler J, Mitchell CJ, Kim MS, Pandey A, Sollner-Webb B, Reddy K. Prediction of Gene Activity in Early B Cell Development Based on an Integrative Multi-Omics Analysis. Journal of Proteomics & Bioinformatics. 7. PMID 25544807 DOI: 10.4172/Jpb.1000302 |
0.359 |
|
| 2014 |
Wu X, Renuse S, Sahasrabuddhe NA, Zahari MS, Chaerkady R, Kim MS, Nirujogi RS, Mohseni M, Kumar P, Raju R, Zhong J, Yang J, Neiswinger J, Jeong JS, Newman R, et al. Activation of diverse signalling pathways by oncogenic PIK3CA mutations. Nature Communications. 5: 4961. PMID 25247763 DOI: 10.1038/Ncomms5961 |
0.368 |
|
| 2014 |
Tong Z, Kim MS, Pandey A, Espenshade PJ. Identification of candidate substrates for the Golgi Tul1 E3 ligase using quantitative diGly proteomics in yeast. Molecular & Cellular Proteomics : McP. 13: 2871-82. PMID 25078903 DOI: 10.1074/Mcp.M114.040774 |
0.366 |
|
| 2014 |
Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, et al. Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. Molecular & Cellular Proteomics : McP. 13: 3184-98. PMID 25060758 DOI: 10.1074/Mcp.M114.038299 |
0.448 |
|
| 2014 |
Manda SS, Nirujogi RS, Pinto SM, Kim MS, Datta KK, Sirdeshmukh R, Prasad TS, Thongboonkerd V, Pandey A, Gowda H. Identification and characterization of proteins encoded by chromosome 12 as part of chromosome-centric human proteome project. Journal of Proteome Research. 13: 3166-77. PMID 24960282 DOI: 10.1021/Pr401123V |
0.376 |
|
| 2014 |
Dwivedi SB, Muthusamy B, Kumar P, Kim MS, Nirujogi RS, Getnet D, Ahiakonu P, De G, Nair B, Gowda H, Prasad TS, Kumar N, Pandey A, Okulate M. Brain proteomics of Anopheles gambiae. Omics : a Journal of Integrative Biology. 18: 421-37. PMID 24937107 DOI: 10.1089/Omi.2014.0007 |
0.354 |
|
| 2014 |
Kim MS, Zhong Y, Yachida S, Rajeshkumar NV, Abel ML, Marimuthu A, Mudgal K, Hruban RH, Poling JS, Tyner JW, Maitra A, Iacobuzio-Donahue CA, Pandey A. Heterogeneity of pancreatic cancer metastases in a single patient revealed by quantitative proteomics. Molecular & Cellular Proteomics : McP. 13: 2803-11. PMID 24895378 DOI: 10.1074/Mcp.M114.038547 |
0.381 |
|
| 2014 |
Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, et al. A draft map of the human proteome. Nature. 509: 575-81. PMID 24870542 DOI: 10.1038/Nature13302 |
0.37 |
|
| 2014 |
Thomas JK, Kim MS, Balakrishnan L, Nanjappa V, Raju R, Marimuthu A, Radhakrishnan A, Muthusamy B, Khan AA, Sakamuri S, Tankala SG, Singal M, Nair B, Sirdeshmukh R, Chatterjee A, et al. Pancreatic Cancer Database: an integrative resource for pancreatic cancer. Cancer Biology & Therapy. 15: 963-7. PMID 24839966 DOI: 10.4161/Cbt.29188 |
0.349 |
|
| 2014 |
Sahasrabuddhe NA, Huang TC, Ahmad S, Kim MS, Yang Y, Ghosh B, Leach SD, Gowda H, Somani BL, Chaerkady R, Pandey A. Regulation of PPAR-alpha pathway by Dicer revealed through proteomic analysis. Journal of Proteomics. 108: 306-15. PMID 24769236 DOI: 10.1016/J.Jprot.2014.04.027 |
0.351 |
|
| 2014 |
Chi Z, Byrne ST, Dolinko A, Harraz MM, Kim MS, Umanah G, Zhong J, Chen R, Zhang J, Xu J, Chen L, Pandey A, Dawson TM, Dawson VL. Botch is a γ-glutamyl cyclotransferase that deglycinates and antagonizes Notch. Cell Reports. 7: 681-8. PMID 24767995 DOI: 10.1016/J.Celrep.2014.03.048 |
0.325 |
|
| 2014 |
Martin I, Kim JW, Lee BD, Kang HC, Xu JC, Jia H, Stankowski J, Kim MS, Zhong J, Kumar M, Andrabi SA, Xiong Y, Dickson DW, Wszolek ZK, Pandey A, et al. Ribosomal protein s15 phosphorylation mediates LRRK2 neurodegeneration in Parkinson's disease. Cell. 157: 472-85. PMID 24725412 DOI: 10.1016/J.Cell.2014.01.064 |
0.34 |
|
| 2014 |
Pinto SM, Manda SS, Kim MS, Taylor K, Selvan LD, Balakrishnan L, Subbannayya T, Yan F, Prasad TS, Gowda H, Lee C, Hancock WS, Pandey A. Functional annotation of proteome encoded by human chromosome 22. Journal of Proteome Research. 13: 2749-60. PMID 24669763 DOI: 10.1021/Pr401169D |
0.335 |
|
| 2014 |
Haeusler AR, Donnelly CJ, Periz G, Simko EA, Shaw PG, Kim MS, Maragakis NJ, Troncoso JC, Pandey A, Sattler R, Rothstein JD, Wang J. C9orf72 nucleotide repeat structures initiate molecular cascades of disease. Nature. 507: 195-200. PMID 24598541 DOI: 10.1038/Nature13124 |
0.322 |
|
| 2014 |
Ahn JM, Kim MS, Kim YI, Jeong SK, Lee HJ, Lee SH, Paik YK, Pandey A, Cho JY. Proteogenomic analysis of human chromosome 9-encoded genes from human samples and lung cancer tissues. Journal of Proteome Research. 13: 137-46. PMID 24274035 DOI: 10.1021/Pr400792P |
0.364 |
|
| 2013 |
Taylor MS, Ruch TR, Hsiao PY, Hwang Y, Zhang P, Dai L, Huang CR, Berndsen CE, Kim MS, Pandey A, Wolberger C, Marmorstein R, Machamer C, Boeke JD, Cole PA. Architectural organization of the metabolic regulatory enzyme ghrelin O-acyltransferase. The Journal of Biological Chemistry. 288: 32211-28. PMID 24045953 DOI: 10.1074/Jbc.M113.510313 |
0.353 |
|
| 2013 |
Hansen AM, Chaerkady R, Sharma J, DÃaz-MejÃa JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A. The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence. Plos Pathogens. 9: e1003403. PMID 23785281 DOI: 10.1371/Journal.Ppat.1003403 |
0.371 |
|
| 2013 |
Patel K, Scrimieri F, Ghosh S, Zhong J, Kim MS, Ren YR, Morgan RA, Iacobuzio-Donahue CA, Pandey A, Kern SE. FAM190A deficiency creates a cell division defect. The American Journal of Pathology. 183: 296-303. PMID 23665203 DOI: 10.1016/J.Ajpath.2013.03.020 |
0.375 |
|
| 2012 |
Kim MS, Kuppireddy SV, Sakamuri S, Singal M, Getnet D, Harsha HC, Goel R, Balakrishnan L, Jacob HK, Kashyap MK, Tankala SG, Maitra A, Iacobuzio-Donahue CA, Jaffee E, Goggins MG, et al. Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs). Journal of Proteome Research. 11: 5556-63. PMID 22985314 DOI: 10.1021/Pr300483R |
0.365 |
|
| 2012 |
van Bodegom D, Zhong J, Kopp N, Dutta C, Kim MS, Bird L, Weigert O, Tyner J, Pandey A, Yoda A, Weinstock DM. Differences in signaling through the B-cell leukemia oncoprotein CRLF2 in response to TSLP and through mutant JAK2. Blood. 120: 2853-63. PMID 22915648 DOI: 10.1182/Blood-2012-02-413252 |
0.343 |
|
| 2012 |
Do Vale LH, Gómez-Mendoza DP, Kim MS, Pandey A, Ricart CA, Ximenes F Filho E, Sousa MV. Secretome analysis of the fungus Trichoderma harzianum grown on cellulose. Proteomics. 12: 2716-28. PMID 22745025 DOI: 10.1002/Pmic.201200063 |
0.349 |
|
| 2012 |
Zhong J, Kim MS, Chaerkady R, Wu X, Huang TC, Getnet D, Mitchell CJ, Palapetta SM, Sharma J, O'Meally RN, Cole RN, Yoda A, Moritz A, Loriaux MM, Rush J, et al. TSLP signaling network revealed by SILAC-based phosphoproteomics. Molecular & Cellular Proteomics : McP. 11: M112.017764. PMID 22345495 DOI: 10.1074/Mcp.M112.017764 |
0.373 |
|
| 2012 |
Huang TC, Sahasrabuddhe NA, Kim MS, Getnet D, Yang Y, Peterson JM, Ghosh B, Chaerkady R, Leach SD, Marchionni L, Wong GW, Pandey A. Regulation of lipid metabolism by Dicer revealed through SILAC mice. Journal of Proteome Research. 11: 2193-205. PMID 22313051 DOI: 10.1021/Pr2009884 |
0.341 |
|
| 2012 |
Kim MS, Pandey A. Electron transfer dissociation mass spectrometry in proteomics. Proteomics. 12: 530-42. PMID 22246976 DOI: 10.1002/Pmic.201100517 |
0.348 |
|
| 2012 |
Wu X, Sahasrabuddhe NA, Renuse S, Zahari S, Chaerkady R, Mohseni M, Yang J, Kim M, Zhong J, Qian J, Zhu H, Vogelstein B, Park BH, Pandey A. Abstract 985: Dissecting PI3K-AKT pathway by phosphoproteomic profiling of PIK3CA knock-in mutants Cancer Research. 72: 985-985. DOI: 10.1158/1538-7445.Am2012-985 |
0.307 |
|
| 2012 |
Wu X, Renuse S, Chen L, Chaerkady R, Kim M, Zahari S, Sahasrabuddhe N, Zhong J, Yang Y, Kashyap M, Marimuthu A, Ling M, Fackler MJ, Merino V, Zhang Z, et al. Abstract 4797: Global phosphotyrosine survey reveals the evidence of activation of multiple tyrosine kinase signaling pathways in basal-like breast cancer cells Cancer Research. 72: 4797-4797. DOI: 10.1158/1538-7445.Am2012-4797 |
0.301 |
|
| 2012 |
Kim M, Chaerkady R, Wu X, O'meally R, Kuppireddy SV, Zhong J, Jacob HK, Marimuthu A, Kashyap MK, Cole R, Iacobuzio-Donahue C, Maitra A, Pandey A. Abstract 1269: Activation of diverse signaling pathways in pancreatic cancer revealed by phosphoproteomics Cancer Research. 72: 1269-1269. DOI: 10.1158/1538-7445.Am2012-1269 |
0.305 |
|
| 2011 |
Chaerkady R, Kelkar DS, Muthusamy B, Kandasamy K, Dwivedi SB, Sahasrabuddhe NA, Kim MS, Renuse S, Pinto SM, Sharma R, Pawar H, Sekhar NR, Mohanty AK, Getnet D, Yang Y, et al. A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry. Genome Research. 21: 1872-81. PMID 21795387 DOI: 10.1101/Gr.127951.111 |
0.375 |
|
| 2010 |
Chen H, Pimienta G, Gu Y, Sun X, Hu J, Kim MS, Chaerkady R, Gucek M, Cole RN, Sukumar S, Pandey A. Proteomic characterization of Her2/neu-overexpressing breast cancer cells. Proteomics. 10: 3800-10. PMID 20960451 DOI: 10.1002/Pmic.201000297 |
0.376 |
|
| 2010 |
Kashyap MK, Harsha HC, Renuse S, Pawar H, Sahasrabuddhe NA, Kim MS, Marimuthu A, Keerthikumar S, Muthusamy B, Kandasamy K, Subbannayya Y, Prasad TS, Mahmood R, Chaerkady R, Meltzer SJ, et al. SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer Biology & Therapy. 10: 796-810. PMID 20686364 DOI: 10.4161/Cbt.10.8.12914 |
0.393 |
|
| 2010 |
Kim MS, Kandasamy K, Chaerkady R, Pandey A. Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer. Journal of the American Society For Mass Spectrometry. 21: 1606-11. PMID 20483638 DOI: 10.1016/J.Jasms.2010.04.011 |
0.348 |
|
| 2010 |
Kim M, Kuppireddy SV, Zhong J, Jacob HK, Marimuthu A, Kashyap MK, Pandey A. Abstract A58: Activation of diverse signaling pathways in pancreatic cancer revealed by phosphoproteomics Cancer Prevention Research. 3. DOI: 10.1158/1940-6207.Prev-10-A58 |
0.306 |
|
| 2008 |
Chaerkady R, Thuluvath PJ, Kim MS, Nalli A, Vivekanandan P, Simmers J, Torbenson M, Pandey A. O Labeling for a Quantitative Proteomic Analysis of Glycoproteins in Hepatocellular Carcinoma. Clinical Proteomics. 4: 137-155. PMID 20357908 DOI: 10.1007/S12014-008-9013-0 |
0.389 |
|
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