Year |
Citation |
Score |
2019 |
Lin M, Guo JT. New insights into protein-DNA binding specificity from hydrogen bond based comparative study. Nucleic Acids Research. PMID 31665426 DOI: 10.1093/Nar/Gkz963 |
0.347 |
|
2018 |
Corona RI, Sudarshan S, Aluru S, Guo JT. An SVM-based method for assessment of transcription factor-DNA complex models. Bmc Bioinformatics. 19: 506. PMID 30577740 DOI: 10.1186/S12859-018-2538-Y |
0.361 |
|
2017 |
Lin M, Whitmire S, Chen J, Farrel A, Shi X, Guo JT. Effects of short indels on protein structure and function in human genomes. Scientific Reports. 7: 9313. PMID 28839204 DOI: 10.1038/S41598-017-09287-X |
0.318 |
|
2017 |
Farrel A, Guo JT. An efficient algorithm for improving structure-based prediction of transcription factor binding sites. Bmc Bioinformatics. 18: 342. PMID 28715997 DOI: 10.1186/S12859-017-1755-0 |
0.317 |
|
2016 |
Farrel A, Murphy J, Guo JT. Structure-based prediction of transcription factor binding specificity using an integrative energy function. Bioinformatics (Oxford, England). 32: i306-i313. PMID 27307632 DOI: 10.1093/Bioinformatics/Btw264 |
0.312 |
|
2016 |
Corona RI, Guo JT. Statistical analysis of structural determinants for protein-DNA binding specificity. Proteins. PMID 27147539 DOI: 10.1002/Prot.25061 |
0.358 |
|
2015 |
Song W, Guo JT. Investigation of arc repressor DNA-binding specificity by comparative molecular dynamics simulations. Journal of Biomolecular Structure & Dynamics. 1-11. PMID 25495540 DOI: 10.1080/07391102.2014.997797 |
0.348 |
|
2014 |
Verma D, Guo JT, Jacobs DJ, Livesay DR. Towards comprehensive analysis of protein family quantitative stability-flexibility relationships using homology models. Methods in Molecular Biology (Clifton, N.J.). 1084: 239-54. PMID 24061925 DOI: 10.1007/978-1-62703-658-0_13 |
0.354 |
|
2014 |
Guo J, Lofgren S, Farrel A. Structure-Based Prediction of Transcription Factor Binding Sites Tsinghua Science & Technology. 19: 568-577. DOI: 10.1109/Tst.2014.6961027 |
0.35 |
|
2013 |
Takeda T, Corona RI, Guo JT. A knowledge-based orientation potential for transcription factor-DNA docking. Bioinformatics (Oxford, England). 29: 322-30. PMID 23220572 DOI: 10.1093/Bioinformatics/Bts699 |
0.363 |
|
2012 |
Turner D, Kim R, Guo JT. TFinDit: transcription factor-DNA interaction data depository. Bmc Bioinformatics. 13: 220. PMID 22943312 DOI: 10.1186/1471-2105-13-220 |
0.344 |
|
2012 |
Wu J, Hong B, Takeda T, Guo JT. High performance transcription factor-DNA docking with GPU computing. Proteome Science. 10: S17. PMID 22759575 DOI: 10.1186/1477-5956-10-S1-S17 |
0.338 |
|
2011 |
Kim R, Corona RI, Hong B, Guo JT. Benchmarks for flexible and rigid transcription factor-DNA docking. Bmc Structural Biology. 11: 45. PMID 22044637 DOI: 10.1186/1472-6807-11-45 |
0.324 |
|
2011 |
Li T, Bonkovsky HL, Guo JT. Structural analysis of heme proteins: implications for design and prediction. Bmc Structural Biology. 11: 13. PMID 21371326 DOI: 10.1186/1472-6807-11-13 |
0.362 |
|
2010 |
Kim R, Guo JT. Systematic analysis of short internal indels and their impact on protein folding. Bmc Structural Biology. 10: 24. PMID 20684774 DOI: 10.1186/1472-6807-10-24 |
0.374 |
|
2010 |
Verma D, Jacobs DJ, Guo J, Livesay DR. Towards Comprehensive Analysis of Protein Family Quantitative Stability/flexibility Relationships Biophysical Journal. 98: 637a. DOI: 10.1016/J.Bpj.2009.12.3489 |
0.33 |
|
2009 |
Kim R, Guo JT. PDA: an automatic and comprehensive analysis program for protein-DNA complex structures. Bmc Genomics. 10: S13. PMID 19594872 DOI: 10.1186/1471-2164-10-S1-S13 |
0.383 |
|
2008 |
Guo JT, Xu Y. Towards modeling of amyloid fibril structures. Frontiers in Bioscience : a Journal and Virtual Library. 13: 4039-50. PMID 18508498 DOI: 10.2741/2992 |
0.365 |
|
2008 |
Liu Z, Guo JT, Li T, Xu Y. Structure-based prediction of transcription factor binding sites using a protein-DNA docking approach. Proteins. 72: 1114-24. PMID 18320590 DOI: 10.1002/Prot.22002 |
0.363 |
|
2007 |
Guo JT, Jaromczyk JW, Xu Y. Analysis of chameleon sequences and their implications in biological processes. Proteins. 67: 548-58. PMID 17299764 DOI: 10.1002/Prot.21285 |
0.347 |
|
2005 |
Wang P, Yan B, Guo JT, Hicks C, Xu Y. Structural genomics analysis of alternative splicing and application to isoform structure modeling. Proceedings of the National Academy of Sciences of the United States of America. 102: 18920-5. PMID 16354838 DOI: 10.1073/Pnas.0506770102 |
0.376 |
|
2005 |
Liu Z, Mao F, Guo JT, Yan B, Wang P, Qu Y, Xu Y. Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential. Nucleic Acids Research. 33: 546-58. PMID 15673715 DOI: 10.1093/Nar/Gki204 |
0.366 |
|
2004 |
Guo JT, Wetzel R, Xu Y. Molecular modeling of the core of Abeta amyloid fibrils. Proteins. 57: 357-64. PMID 15340923 DOI: 10.1002/Prot.20222 |
0.375 |
|
2004 |
Gupta V, Peterson CB, Dice LT, Uchiki T, Racca J, Guo JT, Xu Y, Hettich R, Zhao X, Rothstein R, Dealwis CG. Sml1p is a dimer in solution: characterization of denaturation and renaturation of recombinant Sml1p. Biochemistry. 43: 8568-78. PMID 15222768 DOI: 10.1021/Bi0361721 |
0.332 |
|
2004 |
Qu Y, Guo JT, Olman V, Xu Y. Protein structure prediction using sparse dipolar coupling data. Nucleic Acids Research. 32: 551-61. PMID 14744980 DOI: 10.1093/Nar/Gkh204 |
0.371 |
|
2004 |
Williams AD, Portelius E, Kheterpal I, Guo JT, Cook KD, Xu Y, Wetzel R. Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis. Journal of Molecular Biology. 335: 833-42. PMID 14687578 DOI: 10.1016/J.Jmb.2003.11.008 |
0.358 |
|
2002 |
Guo JT, Yu J, Grass D, de Beer FC, Kindy MS. Inflammation-dependent cerebral deposition of serum amyloid a protein in a mouse model of amyloidosis. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 5900-9. PMID 12122052 DOI: 10.1523/Jneurosci.22-14-05900.2002 |
0.555 |
|
2001 |
Xie C, Lovell MA, Xiong S, Kindy MS, Guo J, Xie J, Amaranth V, Montine TJ, Markesbery WR. Expression of glutathione-S-transferase isozyme in the SY5Y neuroblastoma cell line increases resistance to oxidative stress. Free Radical Biology & Medicine. 31: 73-81. PMID 11425492 DOI: 10.1016/S0891-5849(01)00553-6 |
0.425 |
|
2000 |
Yu J, Zhu H, Guo JT, de Beer FC, Kindy MS. Expression of mouse apolipoprotein SAA1.1 in CE/J mice: isoform-specific effects on amyloidogenesis. Laboratory Investigation; a Journal of Technical Methods and Pathology. 80: 1797-806. PMID 11140693 DOI: 10.1038/Labinvest.3780191 |
0.577 |
|
2000 |
de Villiers WJ, Varilek GW, de Beer FC, Guo JT, Kindy MS. Increased serum amyloid a levels reflect colitis severity and precede amyloid formation in IL-2 knockout mice. Cytokine. 12: 1337-47. PMID 10975993 DOI: 10.1006/Cyto.2000.0716 |
0.468 |
|
2000 |
Yu J, Guo JT, Zhu H, Kindy MS. Amyloid formation in the rat: adenoviral expression of mouse serum amyloid A proteins. Amyloid : the International Journal of Experimental and Clinical Investigation : the Official Journal of the International Society of Amyloidosis. 7: 32-40. PMID 10842703 DOI: 10.3109/13506120009146822 |
0.57 |
|
1999 |
Kindy MS, Yu J, Guo JT, Zhu H. Apolipoprotein Serum Amyloid A in Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. 1: 155-167. PMID 12214001 DOI: 10.3233/Jad-1999-1303 |
0.521 |
|
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