Stuart K. Kim - Publications

Affiliations: 
Development Biology Stanford University, Palo Alto, CA 
Area:
Biostatistics Biology, Molecular Biology, Biomedical Engineering
Website:
http://cmgm.stanford.edu/~kimlab/

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhao Y, Blencowe M, Shi X, Shu L, Levian C, Ahn IS, Kim SK, Huan T, Levy D, Yang X. Integrative Genomics Analysis Unravels Tissue-Specific Pathways, Networks, and Key Regulators of Blood Pressure Regulation. Frontiers in Cardiovascular Medicine. 6: 21. PMID 30931314 DOI: 10.3389/fcvm.2019.00021  0.44
2017 Schmidt ST, Zimmerman SM, Wang J, Kim SK, Quake SR. Quantitative analysis of synthetic cell lineage tracing using nuclease barcoding. Acs Synthetic Biology. PMID 28264564 DOI: 10.1021/acssynbio.6b00309  1
2016 Frøkjær-Jensen C, Jain N, Hansen L, Davis MW, Li Y, Zhao D, Rebora K, Millet JR, Liu X, Kim SK, Dupuy D, Jorgensen EM, Fire AZ. An Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline. Cell. PMID 27374334 DOI: 10.1016/j.cell.2016.05.072  0.48
2016 Mann FG, Van Nostrand EL, Friedland AE, Liu X, Kim SK. Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans. Plos Genetics. 12: e1005956. PMID 27070429 DOI: 10.1371/journal.pgen.1005956  0.48
2015 Dobriban E, Fortney K, Kim SK, Owen AB. Optimal multiple testing under a Gaussian prior on the effect sizes. Biometrika. 102: 753-766. PMID 27046938 DOI: 10.1093/biomet/asv050  0.48
2015 Fortney K, Dobriban E, Garagnani P, Pirazzini C, Monti D, Mari D, Atzmon G, Barzilai N, Franceschi C, Owen AB, Kim SK. Genome-Wide Scan Informed by Age-Related Disease Identifies Loci for Exceptional Human Longevity. Plos Genetics. 11: e1005728. PMID 26677855 DOI: 10.1371/journal.pgen.1005728  0.48
2015 Zimmerman SM, Hinkson IV, Elias JE, Kim SK. Reproductive Aging Drives Protein Accumulation in the Uterus and Limits Lifespan in C. elegans. Plos Genetics. 11: e1005725. PMID 26656270 DOI: 10.1371/journal.pgen.1005725  0.48
2014 Goodlin GT, Roos AK, Roos TR, Hawkins C, Beache S, Baur S, Kim SK. Applying personal genetic data to injury risk assessment in athletes. Plos One. 10: e0122676. PMID 25919592 DOI: 10.1371/journal.pone.0122676  0.48
2014 Gierman HJ, Fortney K, Roach JC, Coles NS, Li H, Glusman G, Markov GJ, Smith JD, Hood L, Coles LS, Kim SK. Whole-genome sequencing of the world's oldest people. Plos One. 9: e112430. PMID 25390934 DOI: 10.1371/journal.pone.0112430  0.48
2014 Zhang X, Gierman HJ, Levy D, Plump A, Dobrin R, Goring HH, Curran JE, Johnson MP, Blangero J, Kim SK, O'Donnell CJ, Emilsson V, Johnson AD. Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs. Bmc Genomics. 15: 532. PMID 24973796 DOI: 10.1186/1471-2164-15-532  0.48
2014 Zimmerman SM, Kim SK. The GATA transcription factor/MTA-1 homolog egr-1 promotes longevity and stress resistance in Caenorhabditis elegans. Aging Cell. 13: 329-39. PMID 24304470 DOI: 10.1111/acel.12179  0.48
2014 Chong T. Bukit brown municipal cemetery: Contesting imaginations of the good life in Singapore Worlding Multiculturalisms: the Politics of Inter-Asian Dwelling. 161-182. DOI: 10.4324/9781315770192  0.32
2013 Cho U, Zimmerman SM, Chen LC, Owen E, Kim JV, Kim SK, Wandless TJ. Rapid and tunable control of protein stability in Caenorhabditis elegans using a small molecule. Plos One. 8: e72393. PMID 23991108 DOI: 10.1371/journal.pone.0072393  0.48
2013 Kim SK, Budovskaya YV, Johnson TE. Reconciliation of daf-2 suppression by elt-3 in Caenorhabditis elegans from Tonsaker et al. (2012) and Kim et al. (2012). Mechanisms of Ageing and Development. 134: 64-5. PMID 23262285 DOI: 10.1016/j.mad.2012.12.004  0.48
2012 Xu X, Kim SK. The GATA transcription factor egl-27 delays aging by promoting stress resistance in Caenorhabditis elegans. Plos Genetics. 8: e1003108. PMID 23271974 DOI: 10.1371/journal.pgen.1003108  0.32
2012 Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, Hasse S, Rupprecht M, Vinis E, Tinney M, Preston E, Zinke A, Enst S, Teichgraber T, Janette J, ... ... Kim SK, et al. A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell. 150: 855-66. PMID 22901814 DOI: 10.1016/j.cell.2012.08.001  0.48
2012 Sagi D, Kim SK. An engineering approach to extending lifespan in C. elegans. Plos Genetics. 8: e1002780. PMID 22737090 DOI: 10.1371/journal.pgen.1002780  0.48
2012 Kim SK, Budovskaya YV, Johnson TE. Response to Tonsaker et al. Mechanisms of Ageing and Development. 133: 54-6; discussion 57-. PMID 22155122 DOI: 10.1016/j.mad.2011.11.006  0.48
2011 Xu X, Kim SK. The early bird catches the worm: new technologies for the Caenorhabditis elegans toolkit. Nature Reviews. Genetics. 12: 793-801. PMID 21969037 DOI: 10.1038/nrg3050  0.32
2011 Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, et al. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Research. 21: 245-54. PMID 21177963 DOI: 10.1101/gr.114587.110  0.48
2010 Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, ... ... Kim SK, et al. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. Plos Genetics. 6: e1000848. PMID 20174564 DOI: 10.1371/journal.pgen.1000848  0.48
2009 Southworth LK, Owen AB, Kim SK. Aging mice show a decreasing correlation of gene expression within genetic modules. Plos Genetics. 5: e1000776. PMID 20019809 DOI: 10.1371/journal.pgen.1000776  0.48
2009 Liu X, Long F, Peng H, Aerni SJ, Jiang M, Sánchez-Blanco A, Murray JI, Preston E, Mericle B, Batzoglou S, Myers EW, Kim SK. Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell. 139: 623-33. PMID 19879847 DOI: 10.1016/j.cell.2009.08.044  0.48
2009 Wheeler HE, Metter EJ, Tanaka T, Absher D, Higgins J, Zahn JM, Wilhelmy J, Davis RW, Singleton A, Myers RM, Ferrucci L, Kim SK. Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging. Plos Genetics. 5: e1000685. PMID 19834535 DOI: 10.1371/journal.pgen.1000685  0.48
2009 Long F, Peng H, Liu X, Kim SK, Myers E. A 3D digital atlas of C. elegans and its application to single-cell analyses Nature Methods. 6: 667-672. PMID 19684595 DOI: 10.1038/nmeth.1366  0.48
2009 Southworth LK, Kim SK, Owen AB. Properties of balanced permutations. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 625-38. PMID 19361331 DOI: 10.1089/cmb.2008.0144  0.48
2008 Budovskaya YV, Wu K, Southworth LK, Jiang M, Tedesco P, Johnson TE, Kim SK. An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans. Cell. 134: 291-303. PMID 18662544 DOI: 10.1016/j.cell.2008.05.044  0.48
2008 Choi J, Southworth LK, Sarin KY, Venteicher AS, Ma W, Chang W, Cheung P, Jun S, Artandi MK, Shah N, Kim SK, Artandi SE. TERT promotes epithelial proliferation through transcriptional control of a Myc- and Wnt-related developmental program. Plos Genetics. 4: e10. PMID 18208333 DOI: 10.1371/journal.pgen.0040010  0.48
2008 Peng H, Long F, Liu X, Kim SK, Myers EW. Straightening Caenorhabditis elegans images. Bioinformatics (Oxford, England). 24: 234-42. PMID 18025002 DOI: 10.1093/bioinformatics/btm569  0.48
2007 Zahn JM, Poosala S, Owen AB, Ingram DK, Lustig A, Carter A, Weeraratna AT, Taub DD, Gorospe M, Mazan-Mamczarz K, Lakatta EG, Boheler KR, Xu X, Mattson MP, Falco G, ... ... Kim SK, et al. AGEMAP: a gene expression database for aging in mice. Plos Genetics. 3: e201. PMID 18081424 DOI: 10.1371/journal.pgen.0030201  0.48
2007 Warren LA, Rossi DJ, Schiebinger GR, Weissman IL, Kim SK, Quake SR. Transcriptional instability is not a universal attribute of aging. Aging Cell. 6: 775-82. PMID 17925006 DOI: 10.1111/j.1474-9726.2007.00337.x  0.48
2007 Zahn JM, Kim SK. Systems biology of aging in four species. Current Opinion in Biotechnology. 18: 355-9. PMID 17681777 DOI: 10.1016/j.copbio.2007.07.004  0.48
2007 Kim SK. Cell biology. Proteins that promote long life. Science (New York, N.Y.). 317: 603-4. PMID 17673641 DOI: 10.1126/science.1146805  0.48
2006 Szewczyk NJ, Udranszky IA, Kozak E, Sunga J, Kim SK, Jacobson LA, Conley CA. Delayed development and lifespan extension as features of metabolic lifestyle alteration in C. elegans under dietary restriction. The Journal of Experimental Biology. 209: 4129-39. PMID 17023606 DOI: 10.1242/jeb.02492  0.48
2006 Zahn JM, Sonu R, Vogel H, Crane E, Mazan-Mamczarz K, Rabkin R, Davis RW, Becker KG, Owen AB, Kim SK. Transcriptional profiling of aging in human muscle reveals a common aging signature. Plos Genetics. 2: e115. PMID 16789832 DOI: 10.1371/journal.pgen.0020115.eor  0.48
2006 Pauli F, Liu Y, Kim YA, Chen PJ, Kim SK. Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans. Development (Cambridge, England). 133: 287-95. PMID 16354718 DOI: 10.1242/dev.02185  0.48
2005 Viswanathan M, Kim SK, Berdichevsky A, Guarente L. A role for SIR-2.1 regulation of ER stress response genes in determining C. elegans life span. Developmental Cell. 9: 605-15. PMID 16256736 DOI: 10.1016/j.devcel.2005.09.017  0.48
2005 Denver DR, Morris K, Streelman JT, Kim SK, Lynch M, Thomas WK. The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans Nature Genetics. 37: 544-548. PMID 15852004 DOI: 10.1038/ng1554  0.48
2005 Shen C, Nettleton D, Jiang M, Kim SK, Powell-Coffman JA. Roles of the HIF-1 hypoxia-inducible factor during hypoxia response in Caenorhabditis elegans. The Journal of Biological Chemistry. 280: 20580-8. PMID 15781453 DOI: 10.1074/jbc.M501894200  0.48
2004 Rodwell GE, Sonu R, Zahn JM, Lund J, Wilhelmy J, Wang L, Xiao W, Mindrinos M, Crane E, Segal E, Myers BD, Brooks JD, Davis RW, Higgins J, Owen AB, ... Kim SK, et al. A transcriptional profile of aging in the human kidney. Plos Biology. 2: e427. PMID 15562319 DOI: 10.1371/journal.pbio.0020427  0.48
2004 Bishop T, Lau KW, Epstein AC, Kim SK, Jiang M, O'Rourke D, Pugh CW, Gleadle JM, Taylor MS, Hodgkin J, Ratcliffe PJ. Genetic analysis of pathways regulated by the von Hippel-Lindau tumor suppressor in Caenorhabditis elegans. Plos Biology. 2: e289. PMID 15361934 DOI: 10.1371/journal.pbio.0020289  0.48
2003 Pellettieri J, Reinke V, Kim SK, Seydoux G. Coordinate activation of maternal protein degradation during the egg-to-embryo transition in C. elegans. Developmental Cell. 5: 451-62. PMID 12967564 DOI: 10.1016/S1534-5807(03)00231-4  0.48
2003 Stuart JM, Segal E, Koller D, Kim SK. A gene-coexpression network for global discovery of conserved genetic modules. Science (New York, N.Y.). 302: 249-55. PMID 12934013 DOI: 10.1126/science.1087447  0.48
2003 Segal E, Kim SK. The modular era of functional genomics. Genome Biology. 4: 317. PMID 12734004  0.44
2003 Wang J, Kim SK. Global analysis of dauer gene expression in Caenorhabditis elegans. Development (Cambridge, England). 130: 1621-34. PMID 12620986  1
2002 Lund J, Tedesco P, Duke K, Wang J, Kim SK, Johnson TE. Transcriptional profile of aging in C. elegans. Current Biology : Cb. 12: 1566-73. PMID 12372248 DOI: 10.1016/S0960-9822(02)01146-6  0.48
2002 Roy PJ, Stuart JM, Lund J, Kim SK. Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature. 418: 975-9. PMID 12214599 DOI: 10.1038/nature01012  0.48
2002 Zhang Y, Ma C, Delohery T, Nasipak B, Foat BC, Bounoutas A, Bussemaker HJ, Kim SK, Chalfie M. Identification of genes expressed in C. elegans touch receptor neurons. Nature. 418: 331-5. PMID 12124626 DOI: 10.1038/nature00891  0.48
2002 Romagnolo B, Jiang M, Kiraly M, Breton C, Begley R, Wang J, Lund J, Kim SK. Downstream targets of let-60 Ras in Caenorhabditis elegans. Developmental Biology. 247: 127-36. PMID 12074557 DOI: 10.1006/dbio.2002.0692  1
2002 Kelly WG, Schaner CE, Dernburg AF, Lee MH, Kim SK, Villeneuve AM, Reinke V. X-chromosome silencing in the germline of C. elegans. Development (Cambridge, England). 129: 479-92. PMID 11807039  0.48
2001 Kim SK, Lund J, Kiraly M, Duke K, Jiang M, Stuart JM, Eizinger A, Wylie BN, Davidson GS. A gene expression map for Caenorhabditis elegans. Science (New York, N.Y.). 293: 2087-92. PMID 11557892 DOI: 10.1126/science.1061603  0.48
2001 Kim SK. Http://c. elegans: Mining the functional genomic landscape Nature Reviews Genetics. 2: 681-689. PMID 11533717 DOI: 10.1038/35088523  0.48
2000 Kim SK. Cell polarity: New partners for Cdc42 and Rac Nature Cell Biology. 2. PMID 10934484 DOI: 10.1038/35019620  0.48
2000 Kim SK. Reading the worm genome Science. 287: 52-53. PMID 10644223 DOI: 10.1126/science.287.5450.52  0.48
1997 Kim SK. Polarized signaling: Basolateral receptor localization in epithelial cells by PDZ-containing proteins Current Opinion in Cell Biology. 9: 853-859. PMID 9425351 DOI: 10.1016/S0955-0674(97)80088-9  0.48
1995 Kim SK. Tight junctions, membrane-associated guanylate kinases and cell signaling Current Opinion in Cell Biology. 7: 641-649. PMID 8573338 DOI: 10.1016/0955-0674(95)80105-7  0.48
1995 Kim SK. Corrigendum: Tight junctions, membrane-associated guanylate kinases and cell signaling (Current Opinion in Cell Biology (1995) 7 (641-649)) Current Opinion in Cell Biology. 7: 891. DOI: 10.1016/0955-0674(95)80075-1  0.48
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