| Year |
Citation |
Score |
| 2020 |
Ozen M, Lipniacki T, Levchenko A, Emamian ES, Abdi A. Modeling and measurement of signaling outcomes affecting decision making in noisy intracellular networks using machine learning methods. Integrative Biology : Quantitative Biosciences From Nano to Macro. 12: 122-138. PMID 32424393 DOI: 10.1093/Intbio/Zyaa009 |
0.316 |
|
| 2019 |
Grabowski F, Czyż P, Kochańczyk M, Lipniacki T. Limits to the rate of information transmission through the MAPK pathway. Journal of the Royal Society Interface. 16: 20180792. PMID 30836891 DOI: 10.1098/Rsif.2018.0792 |
0.317 |
|
| 2018 |
Zuk PJ, Kochańczyk M, Lipniacki T. Sampling rare events in stochastic reaction-diffusion systems within trajectory looping. Physical Review E. 98: 22401. PMID 30253540 DOI: 10.1103/Physreve.98.022401 |
0.311 |
|
| 2018 |
Czerkies M, Korwek Z, Prus W, Kochańczyk M, Jaruszewicz-Błońska J, Tudelska K, Błoński S, Kimmel M, Brasier AR, Lipniacki T. Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways. Nature Communications. 9: 493. PMID 29402958 DOI: 10.1038/S41467-017-02640-8 |
0.372 |
|
| 2017 |
Tudelska K, Markiewicz J, Kochańczyk M, Czerkies M, Prus W, Korwek Z, Abdi A, Błoński S, Kaźmierczak B, Lipniacki T. Information processing in the NF-κB pathway. Scientific Reports. 7: 15926. PMID 29162874 DOI: 10.1038/S41598-017-16166-Y |
0.332 |
|
| 2017 |
Habibi I, Cheong R, Lipniacki T, Levchenko A, Emamian ES, Abdi A. Computation and measurement of cell decision making errors using single cell data. Plos Computational Biology. 13: e1005436. PMID 28379950 DOI: 10.1371/Journal.Pcbi.1005436 |
0.356 |
|
| 2017 |
Varga A, Ehrenreiter K, Aschenbrenner B, Kocieniewski P, Kochanczyk M, Lipniacki T, Baccarini M. RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα. Science Signaling. 10. PMID 28270557 DOI: 10.1126/Scisignal.Aai8482 |
0.324 |
|
| 2017 |
Kochańczyk M, Kocieniewski P, Kozłowska E, Jaruszewicz-Błońska J, Sparta B, Pargett M, Albeck JG, Hlavacek WS, Lipniacki T. Relaxation oscillations and hierarchy of feedbacks in MAPK signaling. Scientific Reports. 7: 38244. PMID 28045041 DOI: 10.1038/Srep38244 |
0.323 |
|
| 2016 |
Korwek Z, Tudelska K, Nałęcz-Jawecki P, Czerkies M, Prus W, Markiewicz J, Kochańczyk M, Lipniacki T. Importins promote high-frequency NF-κB oscillations increasing information channel capacity. Biology Direct. 11: 61. PMID 27835978 DOI: 10.1186/S13062-016-0164-Z |
0.309 |
|
| 2016 |
Hat B, Kochańczyk M, Bogdał MN, Lipniacki T. Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System. Plos Computational Biology. 12: e1004787. PMID 26928575 DOI: 10.1371/Journal.Pcbi.1004787 |
0.36 |
|
| 2015 |
Kellogg RA, Tian C, Lipniacki T, Quake SR, Tay S. Digital signaling decouples activation probability and population heterogeneity. Elife. 4. PMID 26488364 DOI: 10.7554/Elife.08931 |
0.385 |
|
| 2015 |
Szyma?ska P, Martin KR, MacKeigan JP, Hlavacek WS, Lipniacki T. Computational analysis of an autophagy/translation switch based on mutual inhibition of MTORC1 and ULK1. Plos One. 10: e0116550. PMID 25761126 DOI: 10.1371/Journal.Pone.0116550 |
0.335 |
|
| 2014 |
Jaruszewicz J, Kimmel M, Lipniacki T. Stability of bacterial toggle switches is enhanced by cell-cycle lengthening by several orders of magnitude. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 022710. PMID 25353512 DOI: 10.1103/Physreve.89.022710 |
0.303 |
|
| 2014 |
Bertolusso R, Tian B, Zhao Y, Vergara L, Sabree A, Iwanaszko M, Lipniacki T, Brasier AR, Kimmel M. Dynamic cross talk model of the epithelial innate immune response to double-stranded RNA stimulation: coordinated dynamics emerging from cell-level noise. Plos One. 9: e93396. PMID 24710104 DOI: 10.1371/Journal.Pone.0093396 |
0.382 |
|
| 2013 |
Pękalski J, Zuk PJ, Kochańczyk M, Junkin M, Kellogg R, Tay S, Lipniacki T. Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis. Plos One. 8: e78887. PMID 24324544 DOI: 10.1371/Journal.Pone.0078887 |
0.361 |
|
| 2013 |
Kocieniewski P, Lipniacki T. MEK1 and MEK2 differentially control the duration and amplitude of the ERK cascade response. Physical Biology. 10: 035006. PMID 23735655 DOI: 10.1088/1478-3975/10/3/035006 |
0.362 |
|
| 2013 |
Kochanczyk M, Jaruszewicz J, Lipniacki T. Stochastic transitions in a bistable reaction system on the membrane. Journal of the Royal Society, Interface / the Royal Society. 10: 20130151. PMID 23635492 DOI: 10.1098/Rsif.2013.0151 |
0.307 |
|
| 2013 |
Crooks E, Kazmierczak B, Lipniacki T. A spatially extended model of kinase-receptor interaction Siam Journal On Applied Mathematics. 73: 374-400. DOI: 10.1137/110860926 |
0.345 |
|
| 2012 |
Zuk PJ, Kochańczyk M, Jaruszewicz J, Bednorz W, Lipniacki T. Dynamics of a stochastic spatially extended system predicted by comparing deterministic and stochastic attractors of the corresponding birth-death process. Physical Biology. 9: 055002. PMID 23011381 DOI: 10.1088/1478-3975/9/5/055002 |
0.322 |
|
| 2012 |
Barua D, Hlavacek WS, Lipniacki T. A computational model for early events in B cell antigen receptor signaling: analysis of the roles of Lyn and Fyn. Journal of Immunology (Baltimore, Md. : 1950). 189: 646-58. PMID 22711887 DOI: 10.4049/Jimmunol.1102003 |
0.355 |
|
| 2012 |
Kocieniewski P, Faeder JR, Lipniacki T. The interplay of double phosphorylation and scaffolding in MAPK pathways. Journal of Theoretical Biology. 295: 116-24. PMID 22123371 DOI: 10.1016/J.Jtbi.2011.11.014 |
0.331 |
|
| 2011 |
Hat B, Kazmierczak B, Lipniacki T. B cell activation triggered by the formation of the small receptor cluster: a computational study. Plos Computational Biology. 7: e1002197. PMID 21998572 DOI: 10.1371/Journal.Pcbi.1002197 |
0.316 |
|
| 2011 |
Szopa P, Lipniacki T, Kazmierczak B. Exact solutions to a spatially extended model of kinase-receptor interaction. Physical Biology. 8: 055005. PMID 21832804 DOI: 10.1088/1478-3975/8/5/055005 |
0.328 |
|
| 2010 |
Kazmierczak B, Lipniacki T. Spatial gradients in kinase cascade regulation Iet Systems Biology. 4: 348-355. PMID 21073234 DOI: 10.1049/Iet-Syb.2010.0002 |
0.348 |
|
| 2010 |
Tay S, Hughey JJ, Lee TK, Lipniacki T, Quake SR, Covert MW. Single-cell NF-B dynamics reveal digital activation and analogue information processing Nature. 466: 267-271. PMID 20581820 DOI: 10.1038/Nature09145 |
0.392 |
|
| 2009 |
Puszynski K, Bertolusso R, Lipniacki T. Crosstalk between p53 and nuclear factor-κB systems: Pro- and anti-apoptotic functions of NF-κB Iet Systems Biology. 3: 356-367. PMID 21028926 DOI: 10.1049/Iet-Syb.2008.0172 |
0.336 |
|
| 2009 |
Hat B, Puszynski K, Lipniacki T. Exploring mechanisms of oscillations in p53 and nuclear factor-κB systems Iet Systems Biology. 3: 342-355. PMID 21028925 DOI: 10.1049/Iet-Syb.2008.0156 |
0.355 |
|
| 2009 |
Kazmierczak B, Lipniacki T. Regulation of kinase activity by diffusion and feedback. Journal of Theoretical Biology. 259: 291-6. PMID 19306885 DOI: 10.1016/J.Jtbi.2009.03.016 |
0.355 |
|
| 2008 |
Puszyński K, Hat B, Lipniacki T. Oscillations and bistability in the stochastic model of p53 regulation. Journal of Theoretical Biology. 254: 452-65. PMID 18577387 DOI: 10.1016/J.Jtbi.2008.05.039 |
0.326 |
|
| 2008 |
Lipniacki T, Hat B, Faeder JR, Hlavacek WS. Stochastic effects and bistability in T cell receptor signaling. Journal of Theoretical Biology. 254: 110-22. PMID 18556025 DOI: 10.1016/J.Jtbi.2008.05.001 |
0.384 |
|
| 2007 |
Lipniacki T, Kimmel M. Deterministic and stochastic models of NFkappaB pathway. Cardiovascular Toxicology. 7: 215-34. PMID 17943462 DOI: 10.1007/S12012-007-9003-X |
0.414 |
|
| 2007 |
Lipniacki T, Puszynski K, Paszek P, Brasier AR, Kimmel M. Single TNFalpha trimers mediating NF-kappaB activation: stochastic robustness of NF-kappaB signaling. Bmc Bioinformatics. 8: 376. PMID 17925009 DOI: 10.1186/1471-2105-8-376 |
0.399 |
|
| 2007 |
Fujarewicz K, Kimmel M, Lipniacki T, Swierniak A. Adjoint systems for models of cell signaling pathways and their application to parameter fitting. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 322-35. PMID 17666754 DOI: 10.1109/Tcbb.2007.1016 |
0.355 |
|
| 2006 |
Lipniacki T, Paszek P, Brasier AR, Luxon BA, Kimmel M. Stochastic regulation in early immune response. Biophysical Journal. 90: 725-42. PMID 16284261 DOI: 10.1529/Biophysj.104.056754 |
0.402 |
|
| 2006 |
Lipniacki T, Paszek P, Marciniak-Czochra A, Brasier AR, Kimmel M. Transcriptional stochasticity in gene expression. Journal of Theoretical Biology. 238: 348-67. PMID 16039671 DOI: 10.1016/J.Jtbi.2005.05.032 |
0.342 |
|
| 2005 |
Paszek P, Lipniacki T, Brasier AR, Tian B, Nowak DE, Kimmel M. Stochastic effects of multiple regulators on expression profiles in eukaryotes. Journal of Theoretical Biology. 233: 423-33. PMID 15652150 DOI: 10.1016/J.Jtbi.2004.10.023 |
0.365 |
|
| 2004 |
Lipniacki T, Paszek P, Brasier AR, Luxon B, Kimmel M. Mathematical model of NF-kappaB regulatory module. Journal of Theoretical Biology. 228: 195-215. PMID 15094015 DOI: 10.1016/J.Jtbi.2004.01.001 |
0.371 |
|
| 1998 |
Lipniacki T. Non-linear mechanical model of DNA dynamics Nuovo Cimento Della Societa Italiana Di Fisica D - Condensed Matter, Atomic, Molecular and Chemical Physics, Biophysics. 20: 833-843. DOI: 10.1007/Bf03185484 |
0.305 |
|
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