| Year |
Citation |
Score |
| 2019 |
Vodovotz Y, Simmons RL, Barclay D, Yin J, Jefferson BS, Zamora R. Decoding the secreted inflammatory response of primary human hepatocytes to hypoxic stress . Annals of Translational Medicine. 7: 371. PMID 31555685 DOI: 10.21037/atm.2019.07.09 |
0.4 |
|
| 2019 |
Lamparello AJ, Namas RA, Schimunek L, Cohen M, El-Dehaibi F, Yin J, Barclay D, Zamora R, Billiar TR, Vodovotz Y. An Aging-Related Single-Nucleotide Polymorphism is Associated with Altered Clinical Outcomes and Distinct Inflammatory Profiles in Aged Blunt Trauma Patients. Shock (Augusta, Ga.). PMID 31318836 DOI: 10.1097/SHK.0000000000001411 |
0.4 |
|
| 2019 |
Vodovotz Y, An G. Agent-based models of inflammation in translational systems biology: A decade later. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. e1460. PMID 31260168 DOI: 10.1002/wsbm.1460 |
0.32 |
|
| 2019 |
Seymour CW, Kennedy JN, Wang S, Chang CH, Elliott CF, Xu Z, Berry S, Clermont G, Cooper G, Gomez H, Huang DT, Kellum JA, Mi Q, Opal SM, Talisa V, ... ... Vodovotz Y, et al. Derivation, Validation, and Potential Treatment Implications of Novel Clinical Phenotypes for Sepsis. Jama. PMID 31104070 DOI: 10.1001/jama.2019.5791 |
0.32 |
|
| 2019 |
Toney NA, Bell MJ, Belle SH, Hardison RM, Rodriguez-Baez N, Loomes KM, Vodovotz Y, Zamora R, Squires RH. Hepatic Encephalopathy in Children with Acute Liver Failure - Utility of Serum Neuromarkers. Journal of Pediatric Gastroenterology and Nutrition. PMID 31058776 DOI: 10.1097/MPG.0000000000002351 |
0.4 |
|
| 2019 |
Zamora R, Barclay D, Yin J, Alonso EM, Leonis MA, Mi Q, Billiar TR, Simmons RL, Squires RH, Vodovotz Y. HMGB1 is a Central Driver of Dynamic Pro-inflammatory Networks in Pediatric Acute Liver Failure induced by Acetaminophen. Scientific Reports. 9: 5971. PMID 30979951 DOI: 10.1038/s41598-019-42564-5 |
0.4 |
|
| 2018 |
Day JD, Cockrell C, Namas R, Zamora R, An G, Vodovotz Y. Inflammation and Disease: Modelling and Modulation of the Inflammatory Response to Alleviate Critical Illness. Current Opinion in Systems Biology. 12: 22-29. PMID 30886940 DOI: 10.1016/j.coisb.2018.08.008 |
0.32 |
|
| 2018 |
Zamora R, Korff S, Mi Q, Barclay D, Schimunek L, Zucca R, Arsiwalla XD, Simmons RL, Verschure P, Billiar TR, Vodovotz Y. A computational analysis of dynamic, multi-organ inflammatory crosstalk induced by endotoxin in mice. Plos Computational Biology. 14: e1006582. PMID 30399158 DOI: 10.1371/journal.pcbi.1006582 |
0.4 |
|
| 2018 |
Sachdev U, Vodovotz L, Bitner J, Barclay D, Zamora R, Yin J, Simmons RL, Vodovotz Y. Suppressed networks of inflammatory mediators characterize chronic venous insufficiency. Journal of Vascular Surgery. Venous and Lymphatic Disorders. PMID 29439934 DOI: 10.1016/j.jvsv.2017.11.009 |
0.4 |
|
| 2017 |
Vodovotz Y, Simmons RL, Gandhi CR, Barclay D, Jefferson BS, Huang C, Namas R, El-Dehaibi F, Mi Q, Billiar TR, Zamora R. "Thinking" vs. "Talking": Differential Autocrine Inflammatory Networks in Isolated Primary Hepatic Stellate Cells and Hepatocytes under Hypoxic Stress. Frontiers in Physiology. 8: 1104. PMID 29312006 DOI: 10.3389/fphys.2017.01104 |
0.4 |
|
| 2017 |
Schimunek L, Namas RA, Yin J, Liu D, Barclay D, El-Dehaibi F, Abboud A, Lindberg H, Zamora R, Timothy RB, Vodovotz Y. An Enrichment Strategy Yields Seven Novel Single Nucleotide Polymorphisms Associated with Mortality and Altered TH17 Responses Following Blunt Trauma. Shock (Augusta, Ga.). PMID 28930911 DOI: 10.1097/SHK.0000000000000987 |
0.4 |
|
| 2016 |
Zamora R, Vodovotz Y, Mi Q, Barclay D, Yin J, Horslen S, Rudnick D, Loomes KM, Squires RH. Data-Driven Modeling for Precision Medicine in Pediatric Acute Liver Failure. Molecular Medicine (Cambridge, Mass.). 22. PMID 27900388 DOI: 10.2119/molmed.2016.00183 |
0.4 |
|
| 2016 |
Sadowsky D, Zamora R, Barclay D, Yin J, Fontes P, Vodovotz Y. Machine Perfusion of Porcine Livers with Oxygen-Carrying Solution Results in Reprogramming of Dynamic Inflammation Networks. Frontiers in Pharmacology. 7: 413. PMID 27867357 DOI: 10.3389/fphar.2016.00413 |
0.4 |
|
| 2016 |
Constantine G, Buliga M, Mi Q, Constantine F, Abboud A, Zamora R, Puccio A, Okonkwo D, Vodovotz Y. Dynamic Profiling: Modeling the Dynamics of Inflammation and Predicting Outcomes in Traumatic Brain Injury Patients. Frontiers in Pharmacology. 7: 383. PMID 27847476 DOI: 10.3389/fphar.2016.00383 |
0.32 |
|
| 2016 |
Abboud A, Mi Q, Puccio A, Okonkwo D, Buliga M, Constantine G, Vodovotz Y. Inflammation Following Traumatic Brain Injury in Humans: Insights from Data-Driven and Mechanistic Models into Survival and Death. Frontiers in Pharmacology. 7: 342. PMID 27729864 DOI: 10.3389/fphar.2016.00342 |
0.32 |
|
| 2016 |
Namas RA, Almahmoud K, Mi Q, Ghuma A, Namas R, Zaaqoq A, Zhu X, Abdul-Malak O, Sperry J, Zamora R, Billiar TR, Vodovotz Y. Individual-specific principal component analysis of circulating inflammatory mediators predicts early organ dysfunction in trauma patients. Journal of Critical Care. 36: 146-153. PMID 27546764 DOI: 10.1016/j.jcrc.2016.07.002 |
0.32 |
|
| 2016 |
Abboud A, Namas RA, Ramadan M, Mi Q, Almahmoud K, Abdul-Malak O, Azhar N, Zaaqoq A, Namas R, Barclay DA, Yin J, Sperry J, Peitzman A, Zamora R, Simmons RL, ... ... Vodovotz Y, et al. Computational Analysis Supports an Early, Type 17 Cell-Associated Divergence of Blunt Trauma Survival and Mortality. Critical Care Medicine. PMID 27513538 DOI: 10.1097/CCM.0000000000001951 |
1 |
|
| 2016 |
Kassab GS, An G, Sander EA, Miga MI, Guccione JM, Ji S, Vodovotz Y. Augmenting Surgery via Multi-scale Modeling and Translational Systems Biology in the Era of Precision Medicine: A Multidisciplinary Perspective. Annals of Biomedical Engineering. PMID 27015816 DOI: 10.1007/s10439-016-1596-4 |
1 |
|
| 2015 |
Hussain F, Langmead CJ, Mi Q, Dutta-Moscato J, Vodovotz Y, Jha SK. Automated parameter estimation for biological models using Bayesian statistical model checking. Bmc Bioinformatics. 16: S8. PMID 26679759 DOI: 10.1186/1471-2105-16-S17-S8 |
0.32 |
|
| 2015 |
Starzl R, Wolfram D, Zamora R, Jefferson B, Barclay D, Ho C, Gorantla V, Brandacher G, Schneeberger S, Andrew Lee WP, Carbonell J, Vodovotz Y. Cardiac Arrest Disrupts Caspase-1 and Patterns of Inflammatory Mediators Differently in Skin and Muscle Following Localized Tissue Injury in Rats: Insights from Data-Driven Modeling. Frontiers in Immunology. 6: 587. PMID 26635801 DOI: 10.3389/fimmu.2015.00587 |
0.4 |
|
| 2015 |
Namas RA, Mi Q, Namas R, Almahmoud K, Zaaqoq A, Abdul-Malak O, Azhar N, Day J, Abboud A, Zamora R, Billiar T, Vodovotz Y. Insights into the Role of Chemokines, Damage-Associated Molecular Patterns, and Lymphocyte-derived Mediators from Computational Models of Trauma-Induced Inflammation. Antioxidants & Redox Signaling. PMID 26560096 DOI: 10.1089/ars.2015.6398 |
1 |
|
| 2015 |
Ziraldo C, Solovyev A, Allegretti A, Krishnan S, Henzel MK, Sowa GA, Brienza D, An G, Mi Q, Vodovotz Y. A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury. Plos Computational Biology. 11: e1004309. PMID 26111346 DOI: 10.1371/journal.pcbi.1004309 |
1 |
|
| 2015 |
Sadowsky D, Nieman G, Barclay D, Mi Q, Zamora R, Constantine G, Golub L, Lee HM, Roy S, Gatto LA, Vodovotz Y. Impact of chemically-modified tetracycline 3 on intertwined physiological, biochemical, and inflammatory networks in porcine sepsis/ARDS. International Journal of Burns and Trauma. 5: 22-35. PMID 26064799 |
0.4 |
|
| 2015 |
Vasudeva K, Vodovotz Y, Azhar N, Barclay D, Janjic JM, Pollock JA. In vivo and systems biology studies implicate IL-18 as a central mediator in chronic pain. Journal of Neuroimmunology. 283: 43-9. PMID 26004155 DOI: 10.1016/j.jneuroim.2015.04.012 |
1 |
|
| 2015 |
Brown D, Namas RA, Almahmoud K, Zaaqoq A, Sarkar J, Barclay DA, Yin J, Ghuma A, Abboud A, Constantine G, Nieman G, Zamora R, Chang SC, Billiar TR, Vodovotz Y. Trauma in silico: Individual-specific mathematical models and virtual clinical populations. Science Translational Medicine. 7: 285ra61. PMID 25925680 DOI: 10.1126/scitranslmed.aaa3636 |
1 |
|
| 2015 |
Nishikawa T, Bell A, Brooks JM, Setoyama K, Melis M, Han B, Fukumitsu K, Handa K, Tian J, Kaestner KH, Vodovotz Y, Locker J, Soto-Gutierrez A, Fox IJ. Resetting the transcription factor network reverses terminal chronic hepatic failure. The Journal of Clinical Investigation. 125: 1533-44. PMID 25774505 DOI: 10.1172/JCI73137 |
1 |
|
| 2015 |
Buchholz BM, Shapiro RA, Vodovotz Y, Billiar TR, Sodhi CP, Hackam DJ, Bauer AJ. Myocyte TLR4 enhances enteric and systemic inflammation driving late murine endotoxic ileus. American Journal of Physiology. Gastrointestinal and Liver Physiology. 308: G852-62. PMID 25747352 DOI: 10.1152/ajpgi.00211.2014 |
1 |
|
| 2015 |
Zolin SJ, Vodovotz Y, Forsythe RM, Rosengart MR, Namas R, Brown JB, Peitzman AP, Billiar TR, Sperry JL. The early evolving sex hormone environment is associated with significant outcome and inflammatory response differences after injury. The Journal of Trauma and Acute Care Surgery. 78: 451-7; discussion 45. PMID 25710413 DOI: 10.1097/TA.0000000000000550 |
1 |
|
| 2015 |
Wang J, Vodovotz Y, Fan L, Li Y, Liu Z, Namas R, Barclay D, Zamora R, Billiar TR, Wilson MA, Fan J, Jiang Y. Injury-induced MRP8/MRP14 stimulates IP-10/CXCL10 in monocytes/macrophages. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 29: 250-62. PMID 25342131 DOI: 10.1096/fj.14-255992 |
1 |
|
| 2015 |
Wolf MT, Vodovotz Y, Tottey S, Brown BN, Badylak SF. Predicting in vivo responses to biomaterials via combined in vitro and in silico analysis. Tissue Engineering. Part C, Methods. 21: 148-59. PMID 24980950 DOI: 10.1089/ten.TEC.2014.0167 |
1 |
|
| 2014 |
Khalifian S, Nicholson Y, Ziraldo C, Starzl R, Schneeberger S, Thomson A, Brandacher G, Vodovotz Y, Raimondi G. Abstract 102: inflammatory mediators modulate alloreactive T cell susceptibility to immune-regulation in reconstructive transplantation. Plastic and Reconstructive Surgery. 133: 117. PMID 25942213 DOI: 10.1097/01.prs.0000444926.53453.9f |
0.4 |
|
| 2014 |
Azhar N, Vodovotz Y. Innate immunity in disease: insights from mathematical modeling and analysis. Advances in Experimental Medicine and Biology. 844: 227-43. PMID 25480644 DOI: 10.1007/978-1-4939-2095-2_11 |
1 |
|
| 2014 |
Namas RA, Vodovotz Y, Almahmoud K, Abdul-Malak O, Zaaqoq A, Namas R, Mi Q, Barclay D, Zuckerbraun B, Peitzman AB, Sperry J, Billiar TR. Temporal Patterns of Circulating Inflammation Biomarker Networks Differentiate Susceptibility to Nosocomial Infection Following Blunt Trauma in Humans. Annals of Surgery. PMID 25371118 DOI: 10.1097/SLA.0000000000001001 |
1 |
|
| 2014 |
Dutta-Moscato J, Solovyev A, Mi Q, Nishikawa T, Soto-Gutierrez A, Fox IJ, Vodovotz Y. A Multiscale Agent-Based in silico Model of Liver Fibrosis Progression. Frontiers in Bioengineering and Biotechnology. 2: 18. PMID 25152891 DOI: 10.3389/fbioe.2014.00018 |
0.32 |
|
| 2014 |
Bielekova B, Vodovotz Y, An G, Hallenbeck J. How implementation of systems biology into clinical trials accelerates understanding of diseases. Frontiers in Neurology. 5: 102. PMID 25018747 DOI: 10.3389/fneur.2014.00102 |
0.32 |
|
| 2014 |
Wolfram D, Starzl R, Hackl H, Barclay D, Hautz T, Zelger B, Brandacher G, Lee WP, Eberhart N, Vodovotz Y, Pratschke J, Pierer G, Schneeberger S. Insights from computational modeling in inflammation and acute rejection in limb transplantation. Plos One. 9: e99926. PMID 24926998 DOI: 10.1371/journal.pone.0099926 |
0.4 |
|
| 2014 |
Mathew S, Bartels J, Banerjee I, Vodovotz Y. Global sensitivity analysis of a mathematical model of acute inflammation identifies nonlinear dependence of cumulative tissue damage on host interleukin-6 responses. Journal of Theoretical Biology. 358: 132-48. PMID 24909493 DOI: 10.1016/j.jtbi.2014.05.036 |
1 |
|
| 2014 |
Aerts JM, Haddad WM, An G, Vodovotz Y. From data patterns to mechanistic models in acute critical illness. Journal of Critical Care. 29: 604-10. PMID 24768566 DOI: 10.1016/j.jcrc.2014.03.018 |
1 |
|
| 2014 |
Zaaqoq AM, Namas R, Almahmoud K, Azhar N, Mi Q, Zamora R, Brienza DM, Billiar TR, Vodovotz Y. Inducible protein-10, a potential driver of neurally controlled interleukin-10 and morbidity in human blunt trauma. Critical Care Medicine. 42: 1487-97. PMID 24584064 DOI: 10.1097/CCM.0000000000000248 |
1 |
|
| 2014 |
Emr B, Sadowsky D, Azhar N, Gatto LA, An G, Nieman GF, Vodovotz Y. Removal of inflammatory ascites is associated with dynamic modification of local and systemic inflammation along with prevention of acute lung injury: in vivo and in silico studies. Shock (Augusta, Ga.). 41: 317-23. PMID 24430553 DOI: 10.1097/SHK.0000000000000121 |
1 |
|
| 2014 |
Huang W, Vodovotz Y, Kusturiss MB, Barclay D, Greenwald K, Boninger ML, Coen PM, Brienza D, Sowa G. Identification of distinct monocyte phenotypes and correlation with circulating cytokine profiles in acute response to spinal cord injury: a pilot study. Pm & R : the Journal of Injury, Function, and Rehabilitation. 6: 332-41. PMID 24140737 DOI: 10.1016/j.pmrj.2013.10.006 |
1 |
|
| 2014 |
Zhu X, Pribis JP, Rodriguez PC, Morris SM, Vodovotz Y, Billiar TR, Ochoa JB. The central role of arginine catabolism in T-cell dysfunction and increased susceptibility to infection after physical injury. Annals of Surgery. 259: 171-8. PMID 23470573 DOI: 10.1097/SLA.0b013e31828611f8 |
1 |
|
| 2013 |
Vodovotz Y, An G, Androulakis IP. A Systems Engineering Perspective on Homeostasis and Disease. Frontiers in Bioengineering and Biotechnology. 1: 6. PMID 25022216 DOI: 10.3389/fbioe.2013.00006 |
0.32 |
|
| 2013 |
Ziraldo C, Mi Q, An G, Vodovotz Y. Computational Modeling of Inflammation and Wound Healing. Advances in Wound Care. 2: 527-537. PMID 24527362 DOI: 10.1089/wound.2012.0416 |
0.4 |
|
| 2013 |
Ziraldo C, Vodovotz Y, Namas RA, Almahmoud K, Tapias V, Mi Q, Barclay D, Jefferson BS, Chen G, Billiar TR, Zamora R. Central role for MCP-1/CCL2 in injury-induced inflammation revealed by in vitro, in silico, and clinical studies. Plos One. 8: e79804. PMID 24312451 DOI: 10.1371/journal.pone.0079804 |
1 |
|
| 2013 |
Azhar N, Ziraldo C, Barclay D, Rudnick DA, Squires RH, Vodovotz Y. Analysis of serum inflammatory mediators identifies unique dynamic networks associated with death and spontaneous survival in pediatric acute liver failure Plos One. 8. PMID 24244295 DOI: 10.1371/journal.pone.0078202 |
1 |
|
| 2013 |
Emr B, Gatto LA, Roy S, Satalin J, Ghosh A, Snyder K, Andrews P, Habashi N, Marx W, Ge L, Wang G, Dean DA, Vodovotz Y, Nieman G. Airway pressure release ventilation prevents ventilator-induced lung injury in normal lungs. Jama Surgery. 148: 1005-12. PMID 24026214 DOI: 10.1001/jamasurg.2013.3746 |
1 |
|
| 2013 |
Namas RA, Bartels J, Hoffman R, Barclay D, Billiar TR, Zamora R, Vodovotz Y. Combined in silico, in vivo, and in vitro studies shed insights into the acute inflammatory response in middle-aged mice. Plos One. 8: e67419. PMID 23844008 DOI: 10.1371/journal.pone.0067419 |
0.4 |
|
| 2013 |
Price I, Ermentrout B, Zamora R, Wang B, Azhar N, Mi Q, Constantine G, Faeder JR, Luckhart S, Vodovotz Y. In vivo, in vitro, and in silico studies suggest a conserved immune module that regulates malaria parasite transmission from mammals to mosquitoes. Journal of Theoretical Biology. 334: 173-86. PMID 23764028 DOI: 10.1016/j.jtbi.2013.05.028 |
1 |
|
| 2013 |
Solovyev A, Mi Q, Tzen YT, Brienza D, Vodovotz Y. Hybrid equation/agent-based model of ischemia-induced hyperemia and pressure ulcer formation predicts greater propensity to ulcerate in subjects with spinal cord injury. Plos Computational Biology. 9: e1003070. PMID 23696726 DOI: 10.1371/journal.pcbi.1003070 |
1 |
|
| 2013 |
Christley S, Emr B, Ghosh A, Satalin J, Gatto L, Vodovotz Y, Nieman GF, An G. Bayesian inference of the lung alveolar spatial model for the identification of alveolar mechanics associated with acute respiratory distress syndrome. Physical Biology. 10: 036008. PMID 23598859 DOI: 10.1088/1478-3975/10/3/036008 |
1 |
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| 2013 |
Roy S, Habashi N, Sadowitz B, Andrews P, Ge L, Wang G, Roy P, Ghosh A, Kuhn M, Satalin J, Gatto LA, Lin X, Dean DA, Vodovotz Y, Nieman G. Early airway pressure release ventilation prevents ARDS-a novel preventive approach to lung injury. Shock (Augusta, Ga.). 39: 28-38. PMID 23247119 DOI: 10.1097/SHK.0b013e31827b47bb |
1 |
|
| 2013 |
Arciero J, Bard Ermentrout G, Siggers R, Afrazi A, Hackam D, Vodovotz Y, Rubin J. Modeling the interactions of bacteria and Toll-like receptor-mediated inflammation in necrotizing enterocolitis Journal of Theoretical Biology. 321: 83-99. PMID 23238281 DOI: 10.1016/j.jtbi.2012.12.002 |
1 |
|
| 2013 |
Barber J, Tronzo M, Harold Horvat C, Clermont G, Upperman J, Vodovotz Y, Yotov I. A three-dimensional mathematical and computational model of necrotizing enterocolitis. Journal of Theoretical Biology. 322: 17-32. PMID 23228363 DOI: 10.1016/j.jtbi.2012.11.018 |
1 |
|
| 2013 |
Zhang M, Ueki S, Kimura S, Yoshida O, Castellaneta A, Ozaki KS, Demetris AJ, Ross M, Vodovotz Y, Thomson AW, B Stolz D, Geller DA, Murase N. Roles of dendritic cells in murine hepatic warm and liver transplantation-induced cold ischemia/reperfusion injury. Hepatology (Baltimore, Md.). 57: 1585-96. PMID 23184590 DOI: 10.1002/hep.26129 |
1 |
|
| 2012 |
Namas RA, Mikheev M, Yin J, Over P, Young M, Constantine GM, Zamora R, Gerlach J, Vodovotz Y. A Biohybrid Device for the Systemic Control of Acute Inflammation. Disruptive Science and Technology. 1. PMID 24205448 DOI: 10.1089/dst.2012.0001 |
0.32 |
|
| 2012 |
An G, Namas RA, Vodovotz Y. Sepsis: from pattern to mechanism and back. Critical Reviews in Biomedical Engineering. 40: 341-51. PMID 23140124 |
0.32 |
|
| 2012 |
Vodovotz Y, Prelich J, Lagoa C, Barclay D, Zamora R, Murase N, Gandhi CR. Augmenter of liver regeneration (ALR) is a novel biomarker of hepatocellular stress/inflammation: in vitro, in vivo and in silico studies. Molecular Medicine (Cambridge, Mass.). 18: 1421-9. PMID 23073658 DOI: 10.2119/molmed.2012.00183 |
1 |
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| 2012 |
Sumpter TL, Dangi A, Matta BM, Huang C, Stolz DB, Vodovotz Y, Thomson AW, Gandhi CR. Hepatic stellate cells undermine the allostimulatory function of liver myeloid dendritic cells via STAT3-dependent induction of IDO. Journal of Immunology (Baltimore, Md. : 1950). 189: 3848-58. PMID 22962681 DOI: 10.4049/jimmunol.1200819 |
1 |
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| 2012 |
An G, Nieman G, Vodovotz Y. Computational and systems biology in trauma and sepsis: current state and future perspectives. International Journal of Burns and Trauma. 2: 1-10. PMID 22928162 |
0.32 |
|
| 2012 |
Roy S, Sadowitz B, Andrews P, Gatto LA, Marx W, Ge L, Wang G, Lin X, Dean DA, Kuhn M, Ghosh A, Satalin J, Snyder K, Vodovotz Y, Nieman G, et al. Early stabilizing alveolar ventilation prevents acute respiratory distress syndrome: a novel timing-based ventilatory intervention to avert lung injury. The Journal of Trauma and Acute Care Surgery. 73: 391-400. PMID 22846945 DOI: 10.1097/TA.0b013e31825c7a82 |
1 |
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| 2012 |
Zamora R, Azhar N, Namas R, Metukuri MR, Clermont T, Gladstone C, Namas RA, Hermus L, Megas C, Constantine G, Billiar TR, Fink MP, Vodovotz Y. Identification of a novel pathway of transforming growth factor-β1 regulation by extracellular NAD+ in mouse macrophages: in vitro and in silico studies. The Journal of Biological Chemistry. 287: 31003-14. PMID 22829588 DOI: 10.1074/jbc.M112.344309 |
1 |
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| 2012 |
Dick TE, Molkov YI, Nieman G, Hsieh YH, Jacono FJ, Doyle J, Scheff JD, Calvano SE, Androulakis IP, An G, Vodovotz Y. Linking Inflammation, Cardiorespiratory Variability, and Neural Control in Acute Inflammation via Computational Modeling. Frontiers in Physiology. 3: 222. PMID 22783197 DOI: 10.3389/fphys.2012.00222 |
1 |
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| 2012 |
Namas RA, Namas R, Lagoa C, Barclay D, Mi Q, Zamora R, Peng Z, Wen X, Fedorchak MV, Valenti IE, Federspiel WJ, Kellum JA, Vodovotz Y. Hemoadsorption reprograms inflammation in experimental gram-negative septic peritonitis: insights from in vivo and in silico studies. Molecular Medicine (Cambridge, Mass.). 18: 1366-74. PMID 22751621 DOI: 10.2119/molmed.2012.00106 |
1 |
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| 2012 |
An G, Nieman G, Vodovotz Y. Toward computational identification of multiscale "tipping points" in acute inflammation and multiple organ failure. Annals of Biomedical Engineering. 40: 2414-24. PMID 22527009 DOI: 10.1007/s10439-012-0565-9 |
0.32 |
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| 2012 |
Sperry JL, Vodovotz Y, Ferrell RE, Namas R, Chai YM, Feng QM, Jia WP, Forsythe RM, Peitzman AB, Billiar TR. Racial disparities and sex-based outcomes differences after severe injury. Journal of the American College of Surgeons. 214: 973-80. PMID 22521668 DOI: 10.1016/j.jamcollsurg.2012.02.020 |
1 |
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| 2012 |
Dangi A, Sumpter TL, Kimura S, Stolz DB, Murase N, Raimondi G, Vodovotz Y, Huang C, Thomson AW, Gandhi CR. Selective expansion of allogeneic regulatory T cells by hepatic stellate cells: role of endotoxin and implications for allograft tolerance. Journal of Immunology (Baltimore, Md. : 1950). 188: 3667-77. PMID 22427640 DOI: 10.4049/jimmunol.1102460 |
1 |
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| 2012 |
Nieman G, Brown D, Sarkar J, Kubiak B, Ziraldo C, Dutta-Moscato J, Vieau C, Barclay D, Gatto L, Maier K, Constantine G, Billiar TR, Zamora R, Mi Q, Chang S, ... Vodovotz Y, et al. A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine. Critical Care Medicine. 40: 1052-63. PMID 22425816 DOI: 10.1097/CCM.0b013e31823e986a |
0.4 |
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| 2012 |
Weber M, Lambeck S, Ding N, Henken S, Kohl M, Deigner HP, Enot DP, Igwe EI, Frappart L, Kiehntopf M, Claus RA, Kamradt T, Weih D, Vodovotz Y, Briles DE, et al. Hepatic induction of cholesterol biosynthesis reflects a remote adaptive response to pneumococcal pneumonia. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 2424-36. PMID 22415311 DOI: 10.1096/fj.11-191957 |
1 |
|
| 2012 |
Lee JS, Sperry JL, Ochoa JB, Barclay D, Namas R, Vodovotz Y, Rosengart MR. Persistence of elevated plasma CXCL8 concentrations following red blood cell transfusion in a trauma cohort. Shock (Augusta, Ga.). 37: 373-7. PMID 22293598 DOI: 10.1097/SHK.0b013e31824bcb72 |
0.4 |
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| 2012 |
Liu L, Yannam GR, Nishikawa T, Yamamoto T, Basma H, Ito R, Nagaya M, Dutta-Moscato J, Stolz DB, Duan F, Kaestner KH, Vodovotz Y, Soto-Gutierrez A, Fox IJ. The microenvironment in hepatocyte regeneration and function in rats with advanced cirrhosis. Hepatology (Baltimore, Md.). 55: 1529-39. PMID 22109844 DOI: 10.1002/hep.24815 |
1 |
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| 2012 |
Namas R, Zamora R, Namas R, An G, Doyle J, Dick TE, Jacono FJ, Androulakis IP, Nieman GF, Chang S, Billiar TR, Kellum JA, Angus DC, Vodovotz Y. Sepsis: Something old, something new, and a systems view. Journal of Critical Care. 27: 314.e1-11. PMID 21798705 DOI: 10.1016/j.jcrc.2011.05.025 |
0.32 |
|
| 2011 |
Li NY, Vodovotz Y, Kim KH, Mi Q, Hebda PA, Abbott KV. Biosimulation of acute phonotrauma: an extended model. The Laryngoscope. 121: 2418-28. PMID 22020892 DOI: 10.1002/lary.22226 |
1 |
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| 2011 |
Edmonds RD, Vodovotz Y, Lagoa C, Dutta-Moscato J, Yang Y, Fink MP, Levy RM, Prince JM, Kaczorowski DJ, Tseng GC, Billiar TR. Transcriptomic response of murine liver to severe injury and hemorrhagic shock: a dual-platform microarray analysis. Physiological Genomics. 43: 1170-83. PMID 21828244 DOI: 10.1152/physiolgenomics.00020.2011 |
1 |
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| 2011 |
Ramsgaard L, Englert JM, Manni ML, Milutinovic PS, Gefter J, Tobolewski J, Crum L, Coudriet GM, Piganelli J, Zamora R, Vodovotz Y, Enghild JJ, Oury TD. Lack of the receptor for advanced glycation end-products attenuates e. coli pneumonia in mice Plos One. 6. PMID 21629785 DOI: 10.1371/journal.pone.0020132 |
1 |
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| 2011 |
Mi Q, Constantine G, Ziraldo C, Solovyev A, Torres A, Namas R, Bentley T, Billiar TR, Zamora R, Puyana JC, Vodovotz Y. A dynamic view of trauma/hemorrhage-induced inflammation in mice: principal drivers and networks. Plos One. 6: e19424. PMID 21573002 DOI: 10.1371/journal.pone.0019424 |
0.4 |
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| 2011 |
Namas RA, Metukuri MR, Dhupar R, Velosa C, Jefferson BS, Myer E, Constantine GM, Billiar TR, Vodovotz Y, Zamora R. Hypoxia-induced overexpression of BNIP3 is not dependent on hypoxia-inducible factor 1α in mouse hepatocytes. Shock (Augusta, Ga.). 36: 196-202. PMID 21558981 DOI: 10.1097/SHK.0b013e3182205e07 |
1 |
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| 2011 |
An G, Bartels J, Vodovotz Y. In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation. Drug Development Research. 72: 187-200. PMID 21552346 DOI: 10.1002/ddr.20415 |
0.32 |
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| 2011 |
Brown BN, Price IM, Toapanta FR, DeAlmeida DR, Wiley CA, Ross TM, Oury TD, Vodovotz Y. An agent-based model of inflammation and fibrosis following particulate exposure in the lung. Mathematical Biosciences. 231: 186-96. PMID 21385589 DOI: 10.1016/j.mbs.2011.03.005 |
1 |
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| 2011 |
Menzel CL, Pfeifer R, Darwiche SS, Kobbe P, Gill R, Shapiro RA, Loughran P, Vodovotz Y, Scott MJ, Zenati MS, Billiar TR, Pape HC. Models of lower extremity damage in mice: time course of organ damage and immune response. The Journal of Surgical Research. 166: e149-56. PMID 21276982 DOI: 10.1016/j.jss.2010.11.914 |
1 |
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| 2010 |
Solovyev A, Mikheev M, Zhou L, Dutta-Moscato J, Ziraldo C, An G, Vodovotz Y, Mi Q. SPARK: A Framework for Multi-Scale Agent-Based Biomedical Modeling. International Journal of Agent Technologies and Systems. 2: 18-30. PMID 24163721 DOI: 10.4018/jats.2010070102 |
0.4 |
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| 2010 |
Mi Q, Li NY, Ziraldo C, Ghuma A, Mikheev M, Squires R, Okonkwo DO, Verdolini-Abbott K, Constantine G, An G, Vodovotz Y. Translational systems biology of inflammation: potential applications to personalized medicine. Personalized Medicine. 7: 549-559. PMID 21339856 DOI: 10.2217/pme.10.45 |
1 |
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| 2010 |
Vodovotz Y, An G. Systems biology and inflammation. Methods in Molecular Biology (Clifton, N.J.). 662: 181-201. PMID 20824472 DOI: 10.1007/978-1-60761-800-3_9 |
1 |
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| 2010 |
Arciero JC, Ermentrout GB, Upperman JS, Vodovotz Y, Rubin JE. Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis. Plos One. 5: e10066. PMID 20419099 DOI: 10.1371/journal.pone.0010066 |
1 |
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| 2010 |
Vodovotz Y, Constantine G, Faeder J, Mi Q, Rubin J, Bartels J, Sarkar J, Squires RH, Okonkwo DO, Gerlach J, Zamora R, Luckhart S, Ermentrout B, An G. Translational systems approaches to the biology of inflammation and healing. Immunopharmacology and Immunotoxicology. 32: 181-95. PMID 20170421 DOI: 10.3109/08923970903369867 |
1 |
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| 2010 |
Martins-Green M, Vodovotz Y, Liu P. Systems biology applied to wound healing. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. 18: 1-2. PMID 20082673 DOI: 10.1111/j.1524-475X.2009.00567.x |
1 |
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| 2010 |
Li NY, Abbott KV, Rosen C, An G, Hebda PA, Vodovotz Y. Translational systems biology and voice pathophysiology. The Laryngoscope. 120: 511-5. PMID 20025041 DOI: 10.1002/lary.20755 |
1 |
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| 2010 |
Raimondi G, Sumpter TL, Matta BM, Pillai M, Corbitt N, Vodovotz Y, Wang Z, Thomson AW. Mammalian target of rapamycin inhibition and alloantigen-specific regulatory T cells synergize to promote long-term graft survival in immunocompetent recipients. Journal of Immunology (Baltimore, Md. : 1950). 184: 624-36. PMID 20007530 DOI: 10.4049/jimmunol.0900936 |
1 |
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| 2010 |
Prince JM, Vodovotz Y, Baun MJ, Monga SP, Billiar TR, Gerlach JC. The nitric oxide donor S-nitrosoglutathione reduces apoptotic primary liver cell loss in a three-dimensional perfusion bioreactor culture model developed for liver support. Tissue Engineering. Part A. 16: 861-6. PMID 19814591 DOI: 10.1089/ten.TEA.2009.0256 |
1 |
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| 2010 |
Tyagi P, Barclay D, Zamora R, Yoshimura N, Peters K, Vodovotz Y, Chancellor M. Urine cytokines suggest an inflammatory response in the overactive bladder: a pilot study. International Urology and Nephrology. 42: 629-35. PMID 19784793 DOI: 10.1007/s11255-009-9647-5 |
0.4 |
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| 2009 |
An G, Mi Q, Dutta-Moscato J, Vodovotz Y. Agent-based models in translational systems biology. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 1: 159-71. PMID 20835989 DOI: 10.1002/wsbm.45 |
0.32 |
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| 2009 |
Namas R, Ghuma A, Torres A, Polanco P, Gomez H, Barclay D, Gordon L, Zenker S, Kim HK, Hermus L, Zamora R, Rosengart MR, Clermont G, Peitzman A, Billiar TR, ... ... Vodovotz Y, et al. An adequately robust early TNF-alpha response is a hallmark of survival following trauma/hemorrhage. Plos One. 4: e8406. PMID 20027315 DOI: 10.1371/journal.pone.0008406 |
0.4 |
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| 2009 |
Tyagi P, Tyagi V, Yoshimura N, Witteemer E, Barclay D, Loughran PA, Zamora R, Vodovotz Y. Gender-based reciprocal expression of transforming growth factor-beta1 and the inducible nitric oxide synthase in a rat model of cyclophosphamide-induced cystitis. Journal of Inflammation (London, England). 6: 23. PMID 19691848 DOI: 10.1186/1476-9255-6-23 |
0.4 |
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| 2009 |
Metukuri MR, Namas R, Gladstone C, Clermont T, Jefferson B, Barclay D, Hermus L, Billiar TR, Zamora R, Vodovotz Y. Activation of latent transforming growth factor-beta1 by nitric oxide in macrophages: role of soluble guanylate cyclase and MAP kinases. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. 17: 578-88. PMID 19614923 DOI: 10.1111/j.1524-475X.2009.00509.x |
1 |
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| 2009 |
Wognum S, Lagoa CE, Nagatomi J, Sacks MS, Vodovotz Y. An exploratory pathways analysis of temporal changes induced by spinal cord injury in the rat bladder wall: insights on remodeling and inflammation. Plos One. 4: e5852. PMID 19513121 DOI: 10.1371/journal.pone.0005852 |
1 |
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| 2009 |
Metukuri MR, Beer-Stolz D, Namas RA, Dhupar R, Torres A, Loughran PA, Jefferson BS, Tsung A, Billiar TR, Vodovotz Y, Zamora R. Expression and subcellular localization of BNIP3 in hypoxic hepatocytes and liver stress. American Journal of Physiology. Gastrointestinal and Liver Physiology. 296: G499-509. PMID 19147804 DOI: 10.1152/ajpgi.90526.2008 |
1 |
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| 2009 |
Torres A, Bentley T, Bartels J, Sarkar J, Barclay D, Namas R, Constantine G, Zamora R, Puyana JC, Vodovotz Y. Mathematical modeling of posthemorrhage inflammation in mice: studies using a novel, computer-controlled, closed-loop hemorrhage apparatus. Shock (Augusta, Ga.). 32: 172-8. PMID 19008782 DOI: 10.1097/SHK.0b013e318193cc2b |
0.4 |
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| 2009 |
Rivière B, Epshteyn Y, Swigon D, Vodovotz Y. A simple mathematical model of signaling resulting from the binding of lipopolysaccharide with Toll-like receptor 4 demonstrates inherent preconditioning behavior. Mathematical Biosciences. 217: 19-26. PMID 18950647 DOI: 10.1016/j.mbs.2008.10.002 |
1 |
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| 2009 |
Smaldone MC, Vodovotz Y, Tyagi V, Barclay D, Philips BJ, Yoshimura N, Chancellor MB, Tyagi P. Multiplex analysis of urinary cytokine levels in rat model of cyclophosphamide-induced cystitis. Urology. 73: 421-6. PMID 18848347 DOI: 10.1016/j.urology.2008.07.031 |
1 |
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| 2009 |
Vodovotz Y, Constantine G, Rubin J, Csete M, Voit EO, An G. Mechanistic simulations of inflammation: current state and future prospects. Mathematical Biosciences. 217: 1-10. PMID 18835282 DOI: 10.1016/j.mbs.2008.07.013 |
1 |
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| 2008 |
Daun S, Rubin J, Vodovotz Y, Clermont G. Equation-based models of dynamic biological systems Journal of Critical Care. 23: 585-594. PMID 19056027 DOI: 10.1016/j.jcrc.2008.02.003 |
1 |
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| 2008 |
Li NY, Verdolini K, Clermont G, Mi Q, Rubinstein EN, Hebda PA, Vodovotz Y. A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury. Plos One. 3: e2789. PMID 18665229 DOI: 10.1371/journal.pone.0002789 |
0.32 |
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| 2008 |
Barclay D, Zamora R, Torres A, Namas R, Steed D, Vodovotz Y. A simple, rapid, and convenient Luminex-compatible method of tissue isolation. Journal of Clinical Laboratory Analysis. 22: 278-81. PMID 18623112 DOI: 10.1002/jcla.20253 |
0.4 |
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| 2008 |
Kobbe P, Vodovotz Y, Kaczorowski DJ, Mollen KP, Billiar TR, Pape HC. Patterns of cytokine release and evolution of remote organ dysfunction after bilateral femur fracture. Shock (Augusta, Ga.). 30: 43-7. PMID 18562923 DOI: 10.1097/SHK.0b013e31815d190b |
1 |
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| 2008 |
Daun S, Rubin J, Vodovotz Y, Roy A, Parker R, Clermont G. An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: Results from parameter space reduction Journal of Theoretical Biology. 253: 843-853. PMID 18550083 DOI: 10.1016/j.jtbi.2008.04.033 |
1 |
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| 2008 |
Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout B, Bahar I. Computational insights on the competing effects of nitric oxide in regulating apoptosis. Plos One. 3: e2249. PMID 18509469 DOI: 10.1371/journal.pone.0002249 |
1 |
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| 2008 |
Kobbe P, Kaczorowski DJ, Vodovotz Y, Tzioupis CH, Mollen KP, Billiar TR, Pape HC. Local exposure of bone components to injured soft tissue induces Toll-like receptor 4-dependent systemic inflammation with acute lung injury. Shock (Augusta, Ga.). 30: 686-91. PMID 18461022 DOI: 10.1097/SHK.0b013e31816f257e |
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