Year |
Citation |
Score |
2023 |
Dobbins NJ, Han B, Zhou W, Lan KF, Kim HN, Harrington R, Uzuner Ö, Yetisgen M. LeafAI: query generator for clinical cohort discovery rivaling a human programmer. Journal of the American Medical Informatics Association : Jamia. PMID 37550244 DOI: 10.1093/jamia/ocad149 |
0.31 |
|
2023 |
Lybarger K, Yetisgen M, Uzuner Ö. The 2022 n2c2/UW shared task on extracting social determinants of health. Journal of the American Medical Informatics Association : Jamia. PMID 36795066 DOI: 10.1093/jamia/ocad012 |
0.315 |
|
2022 |
Dobbins NJ, Mullen T, Uzuner Ö, Yetisgen M. The Leaf Clinical Trials Corpus: a new resource for query generation from clinical trial eligibility criteria. Scientific Data. 9: 490. PMID 35953524 DOI: 10.1038/s41597-022-01521-0 |
0.357 |
|
2022 |
Gao Y, Dligach D, Christensen L, Tesch S, Laffin R, Xu D, Miller T, Uzuner O, Churpek MM, Afshar M. A scoping review of publicly available language tasks in clinical natural language processing. Journal of the American Medical Informatics Association : Jamia. PMID 35923088 DOI: 10.1093/jamia/ocac127 |
0.345 |
|
2021 |
Henry S, Wang Y, Shen F, Uzuner O. Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. Journal of the American Medical Informatics Association : Jamia. PMID 34401908 DOI: 10.1093/jamia/ocab153 |
0.361 |
|
2021 |
Mulyar A, Uzuner O, McInnes B. MT-clinical BERT: scaling clinical information extraction with multitask learning. Journal of the American Medical Informatics Association : Jamia. PMID 34333635 DOI: 10.1093/jamia/ocab126 |
0.314 |
|
2020 |
Wang Y, Fu S, Shen F, Henry S, Uzuner O, Liu H. The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview. Jmir Medical Informatics. 8: e23375. PMID 33245291 DOI: 10.2196/23375 |
0.379 |
|
2020 |
Henry S, Wang Y, Shen F, Uzuner O. The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. Journal of the American Medical Informatics Association : Jamia. PMID 32968800 DOI: 10.1093/jamia/ocaa106 |
0.417 |
|
2020 |
Sutphin C, Lee K, Yepes AJ, Uzuner Ö, McInnes BT. Adverse drug event detection using reason assignments in FDA drug labels. Journal of Biomedical Informatics. 103552. PMID 32890727 DOI: 10.1016/J.Jbi.2020.103552 |
0.319 |
|
2019 |
Wang Y, Xu H, Uzuner O. Editorial: The second international workshop on health natural language processing (HealthNLP 2019). Bmc Medical Informatics and Decision Making. 19: 233. PMID 31801516 DOI: 10.1186/S12911-019-0930-9 |
0.334 |
|
2019 |
Spasić I, Uzuner Ö, Zhou L. Emerging clinical applications of text analytics. International Journal of Medical Informatics. 103974. PMID 31630961 DOI: 10.1016/J.Ijmedinf.2019.103974 |
0.463 |
|
2019 |
Henry S, Buchan K, Filannino M, Stubbs A, Uzuner O. 2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records. Journal of the American Medical Informatics Association : Jamia. PMID 31584655 DOI: 10.1093/Jamia/Ocz166 |
0.418 |
|
2019 |
Stubbs A, Filannino M, Soysal E, Henry S, Uzuner Ö. Cohort selection for clinical trials: n2c2 2018 shared task track 1. Journal of the American Medical Informatics Association : Jamia. PMID 31562516 DOI: 10.1093/Jamia/Ocz163 |
0.413 |
|
2019 |
Tao C, Lee K, Filannino M, Uzuner Ö. An Exploratory Study on Pseudo-Data Generation in Prescription and Adverse Drug Reaction Extraction. Studies in Health Technology and Informatics. 264: 388-392. PMID 31437951 DOI: 10.3233/Shti190249 |
0.385 |
|
2019 |
Lee K, Filannino M, Uzuner Ö. An Empirical Test of GRUs and Deep Contextualized Word Representations on De-Identification. Studies in Health Technology and Informatics. 264: 218-222. PMID 31437917 DOI: 10.3233/Shti190215 |
0.365 |
|
2018 |
Tao C, Filannino M, Uzuner Ö. FABLE: A Semi-Supervised Prescription Information Extraction System. Amia ... Annual Symposium Proceedings. Amia Symposium. 2018: 1534-1543. PMID 30815199 |
0.316 |
|
2018 |
Filannino M, Stubbs A, Uzuner Ö. Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S:S62-S70]. Journal of Biomedical Informatics. 85: 204. PMID 30213376 DOI: 10.1016/J.Jbi.2018.08.015 |
0.344 |
|
2018 |
Filannino M, Uzuner Ö. Advancing the State of the Art in Clinical Natural Language Processing through Shared Tasks. Yearbook of Medical Informatics. 27: 184-192. PMID 30157522 DOI: 10.1055/S-0038-1667079 |
0.458 |
|
2017 |
Uzuner O, Stubbs A, Filannino M. A Natural Language Processing Challenge for Clinical Records: Research Domains Criteria (RDoC) for Psychiatry. Journal of Biomedical Informatics. PMID 29042245 DOI: 10.1016/J.Jbi.2017.10.005 |
0.418 |
|
2017 |
Luo Y, Cheng Y, Uzuner Ö, Szolovits P, Starren J. Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. Journal of the American Medical Informatics Association : Jamia. PMID 29025149 DOI: 10.1093/Jamia/Ocx090 |
0.405 |
|
2017 |
Tao C, Filannino M, Uzuner Ö. Prescription Extraction Using CRFs and Word Embeddings. Journal of Biomedical Informatics. PMID 28684255 DOI: 10.1016/j.jbi.2017.07.002 |
0.32 |
|
2017 |
Stubbs A, Filannino M, Uzuner Ö. De-identification of psychiatric intake records: Overview of 2016 CEGS N-GRID Shared Tasks Track 1. Journal of Biomedical Informatics. PMID 28614702 DOI: 10.1016/J.Jbi.2017.06.011 |
0.382 |
|
2017 |
Filannino M, Stubbs A, Uzuner Ö. Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID Shared Tasks Track 2. Journal of Biomedical Informatics. PMID 28455151 DOI: 10.1016/J.Jbi.2017.04.017 |
0.422 |
|
2016 |
Dernoncourt F, Lee JY, Uzuner O, Szolovits P. De-identification of patient notes with recurrent neural networks. Journal of the American Medical Informatics Association : Jamia. PMID 28040687 DOI: 10.1093/Jamia/Ocw156 |
0.326 |
|
2016 |
Luo Y, Uzuner Ö, Szolovits P. Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Briefings in Bioinformatics. PMID 26851224 DOI: 10.1093/Bib/Bbw001 |
0.451 |
|
2016 |
Hagen L, Harrison TM, Uzuner Ö, May W, Fake T, Katragadda S. E-petition popularity: Do linguistic and semantic factors matter? Government Information Quarterly. 33: 783-795. DOI: 10.1016/J.Giq.2016.07.006 |
0.366 |
|
2016 |
Goel S, Uzuner O. Do Sentiments Matter in Fraud Detection? Estimating Semantic Orientation of Annual Reports Intelligent Systems in Accounting, Finance and Management. DOI: 10.1002/Isaf.1392 |
0.315 |
|
2015 |
Uzuner Ö, Stubbs A. Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. Journal of Biomedical Informatics. 58: S1-5. PMID 26515500 DOI: 10.1016/J.Jbi.2015.10.007 |
0.427 |
|
2015 |
Kumar V, Stubbs A, Shaw S, Uzuner O. Creation of a new longitudinal corpus of clinical narratives. Journal of Biomedical Informatics. PMID 26433122 DOI: 10.1016/J.Jbi.2015.09.018 |
0.383 |
|
2015 |
Stubbs A, Uzuner Ö. Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. Journal of Biomedical Informatics. 58: S20-9. PMID 26319540 DOI: 10.1016/J.Jbi.2015.07.020 |
0.445 |
|
2015 |
Kotfila C, Uzuner Ö. A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases. Journal of Biomedical Informatics. 58: S92-S102. PMID 26241355 DOI: 10.1016/J.Jbi.2015.07.016 |
0.343 |
|
2015 |
Stubbs A, Kotfila C, Uzuner Ö. Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. Journal of Biomedical Informatics. 58: S11-9. PMID 26225918 DOI: 10.1016/J.Jbi.2015.06.007 |
0.469 |
|
2015 |
Stubbs A, Kotfila C, Xu H, Uzuner Ö. Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. Journal of Biomedical Informatics. 58: S67-77. PMID 26210362 DOI: 10.1016/J.Jbi.2015.07.001 |
0.352 |
|
2015 |
Zheng K, Vydiswaran VG, Liu Y, Wang Y, Stubbs A, Uzuner O, Gururaj AE, Bayer S, Aberdeen J, Rumshisky A, Pakhomov S, Liu H, Xu H. Ease of adoption of clinical natural language processing software: An evaluation of five systems. Journal of Biomedical Informatics. PMID 26210361 DOI: 10.1016/J.Jbi.2015.07.008 |
0.423 |
|
2015 |
Stubbs A, Uzuner Ö. Annotating risk factors for heart disease in clinical narratives for diabetic patients. Journal of Biomedical Informatics. 58: S78-91. PMID 26004790 DOI: 10.1016/J.Jbi.2015.05.009 |
0.398 |
|
2015 |
Sun W, Rumshisky A, Uzuner O. Normalization of relative and incomplete temporal expressions in clinical narratives. Journal of the American Medical Informatics Association : Jamia. PMID 25868462 DOI: 10.1093/Jamia/Ocu004 |
0.654 |
|
2015 |
Luo Y, Xin Y, Hochberg E, Joshi R, Uzuner O, Szolovits P. Subgraph Augmented Non-Negative Tensor Factorization (SANTF) for Modeling Clinical Narrative Text. Journal of the American Medical Informatics Association : Jamia. PMID 25862765 DOI: 10.1093/Jamia/Ocv016 |
0.391 |
|
2015 |
Stubbs A, Uzuner O, Kotfila C, Goldstein I, Szolovits P. Challenges in synthesizing surrogate PHI in narrative EMRs Medical Data Privacy Handbook. 717-735. DOI: 10.1007/978-3-319-23633-9_27 |
0.668 |
|
2014 |
Chasin R, Rumshisky A, Uzuner O, Szolovits P. Word sense disambiguation in the clinical domain: A comparison of knowledge-rich and knowledgepoor unsupervised methods Journal of the American Medical Informatics Association. 21: 842-849. PMID 24441986 DOI: 10.1136/Amiajnl-2013-002133 |
0.424 |
|
2013 |
Uzuner Ö, Stubbs A, Sun W. Chronology of your health events: approaches to extracting temporal relations from medical narratives. Journal of Biomedical Informatics. 46: S1-4. PMID 24286753 DOI: 10.1016/J.Jbi.2013.11.005 |
0.72 |
|
2013 |
Sun W, Rumshisky A, Uzuner O. Annotating temporal information in clinical narratives Journal of Biomedical Informatics. 46: S5-S12. PMID 23872518 DOI: 10.1016/J.Jbi.2013.07.004 |
0.71 |
|
2013 |
Sun W, Rumshisky A, Uzuner O. Temporal reasoning over clinical text: The state of the art Journal of the American Medical Informatics Association. 20: 814-819. PMID 23676245 DOI: 10.1136/Amiajnl-2013-001760 |
0.713 |
|
2013 |
Sun W, Rumshisky A, Uzuner O. Evaluating temporal relations in clinical text: 2012 i2b2 Challenge Journal of the American Medical Informatics Association. 20: 806-813. PMID 23564629 DOI: 10.1136/Amiajnl-2013-001628 |
0.716 |
|
2012 |
Bodnari A, Szolovits P, Uzuner Ö. MCORES: a system for noun phrase coreference resolution for clinical records. Journal of the American Medical Informatics Association : Jamia. 19: 906-12. PMID 22419739 DOI: 10.1136/Amiajnl-2011-000591 |
0.413 |
|
2012 |
Uzuner O, Bodnari A, Shen S, Forbush T, Pestian J, South BR. Evaluating the state of the art in coreference resolution for electronic medical records. Journal of the American Medical Informatics Association : Jamia. 19: 786-91. PMID 22366294 DOI: 10.1136/Amiajnl-2011-000784 |
0.432 |
|
2011 |
Halgrim SR, Xia F, Solti I, Cadag E, Uzuner O. A cascade of classifiers for extracting medication information from discharge summaries. Journal of Biomedical Semantics. 2: S2. PMID 21992591 DOI: 10.1186/2041-1480-2-S3-S2 |
0.425 |
|
2011 |
Chapman WW, Nadkarni PM, Hirschman L, D'Avolio LW, Savova GK, Uzuner O. Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. Journal of the American Medical Informatics Association : Jamia. 18: 540-3. PMID 21846785 DOI: 10.1136/Amiajnl-2011-000465 |
0.469 |
|
2011 |
Uzuner Ö, South BR, Shen S, DuVall SL. 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. Journal of the American Medical Informatics Association : Jamia. 18: 552-6. PMID 21685143 DOI: 10.1136/Amiajnl-2011-000203 |
0.456 |
|
2010 |
Uzuner O, Solti I, Xia F, Cadag E. Community annotation experiment for ground truth generation for the i2b2 medication challenge. Journal of the American Medical Informatics Association : Jamia. 17: 519-23. PMID 20819855 DOI: 10.1136/Jamia.2010.004200 |
0.345 |
|
2010 |
Uzuner O, Solti I, Cadag E. Extracting medication information from clinical text. Journal of the American Medical Informatics Association : Jamia. 17: 514-8. PMID 20819854 DOI: 10.1136/Jamia.2010.003947 |
0.451 |
|
2010 |
Uzuner O, Mailoa J, Ryan R, Sibanda T. Semantic relations for problem-oriented medical records. Artificial Intelligence in Medicine. 50: 63-73. PMID 20646918 DOI: 10.1016/J.Artmed.2010.05.006 |
0.342 |
|
2010 |
Goel S, Gangolly J, Faerman SR, Uzuner O. Can linguistic predictors detect fraudulent financial filings? Journal of Emerging Technologies in Accounting. 7: 25-46. DOI: 10.2308/Jeta.2010.7.1.25 |
0.357 |
|
2009 |
Goldstein I, Uzuner O. Specializing for predicting obesity and its co-morbidities. Journal of Biomedical Informatics. 42: 873-86. PMID 19041423 DOI: 10.1016/J.Jbi.2008.11.001 |
0.612 |
|
2008 |
Uzuner O, Sibanda TC, Luo Y, Szolovits P. A de-identifier for medical discharge summaries. Artificial Intelligence in Medicine. 42: 13-35. PMID 18053696 DOI: 10.1016/J.Artmed.2007.10.001 |
0.471 |
|
2008 |
Uzuner O, Goldstein I, Luo Y, Kohane I. Identifying patient smoking status from medical discharge records. Journal of the American Medical Informatics Association : Jamia. 15: 14-24. PMID 17947624 DOI: 10.1197/Jamia.M2408 |
0.653 |
|
2007 |
Goldstein I, Arzrumtsyan A, Uzuner O. Three approaches to automatic assignment of ICD-9-CM codes to radiology reports. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 279-83. PMID 18693842 |
0.632 |
|
2007 |
Uzuner O, Luo Y, Szolovits P. Evaluating the state-of-the-art in automatic de-identification. Journal of the American Medical Informatics Association : Jamia. 14: 550-63. PMID 17600094 DOI: 10.1197/Jamia.M2444 |
0.431 |
|
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