| Year |
Citation |
Score |
| 2024 |
Zhang X, Liu Y, Wang N. Multifaceted Roles of Histone Lysine Lactylation in Meiotic Gene Dynamics and Recombination. Biorxiv : the Preprint Server For Biology. PMID 38328171 DOI: 10.1101/2024.01.25.576681 |
0.332 |
|
| 2023 |
Zhang H, Jin Z, Cui F, Zhao L, Zhang X, Chen J, Zhang J, Li Y, Li Y, Niu Y, Zhang W, Gao C, Fu X, Tong Y, Wang L, et al. Epigenetic modifications regulate cultivar-specific root development and metabolic adaptation to nitrogen availability in wheat. Nature Communications. 14: 8238. PMID 38086830 DOI: 10.1038/s41467-023-44003-6 |
0.342 |
|
| 2023 |
Dong X, Luo H, Bi W, Chen H, Yu S, Zhang X, Dai Y, Cheng X, Xing Y, Fan X, Zhu Y, Guo Y, Meng D. Transcriptome-wide identification and characterization of genes exhibit allele-specific imprinting in maize embryo and endosperm. Bmc Plant Biology. 23: 470. PMID 37803280 DOI: 10.1186/s12870-023-04473-8 |
0.307 |
|
| 2023 |
Hu X, Wang Y, Zhang X, Li C, Zhang X, Yang D, Liu Y, Li L. DNA methylation of HOX genes and its clinical implications in cancer. Experimental and Molecular Pathology. 134: 104871. PMID 37696326 DOI: 10.1016/j.yexmp.2023.104871 |
0.381 |
|
| 2022 |
Pan H, Wang H, Zhang X, Yang F, Fan X, Zhang H. Chromosomal instability-associated MAT1 lncRNA insulates MLL1-guided histone methylation and accelerates tumorigenesis. Cell Reports. 41: 111829. PMID 36516779 DOI: 10.1016/j.celrep.2022.111829 |
0.322 |
|
| 2020 |
Yu X, Leiboff S, Li X, Guo T, Ronning N, Zhang X, Muehlbauer GJ, Timmermans MCP, Schnable PS, Scanlon MJ, Yu J. Genomic Prediction of Maize Micro-Phenotypes Provides Insights for Optimizing Selection and Mining Diversity. Plant Biotechnology Journal. PMID 32452105 DOI: 10.1111/Pbi.13420 |
0.346 |
|
| 2020 |
Zhang X, Kaplow IM, Wirthlin M, Park TY, Pfenning AR. HALPER facilitates the identification of regulatory element orthologs across species. Bioinformatics (Oxford, England). PMID 32407523 DOI: 10.1093/Bioinformatics/Btaa493 |
0.304 |
|
| 2020 |
Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, ... ... Zhang X, et al. Author Correction: Widespread long-range cis-regulatory elements in the maize genome. Nature Plants. PMID 32029893 DOI: 10.1038/S41477-020-0600-Z |
0.331 |
|
| 2020 |
Ricci WA, Levin L, Zhang X. Genome-Wide Profiling of Histone Modifications with ChIP-Seq. Methods in Molecular Biology (Clifton, N.J.). 2072: 101-117. PMID 31541441 DOI: 10.1007/978-1-4939-9865-4_9 |
0.487 |
|
| 2019 |
Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, ... ... Zhang X, et al. Widespread long-range cis-regulatory elements in the maize genome. Nature Plants. PMID 31740773 DOI: 10.1038/S41477-019-0547-0 |
0.41 |
|
| 2019 |
Lu Z, Marand AP, Ricci WA, Ethridge CL, Zhang X, Schmitz RJ. The prevalence, evolution and chromatin signatures of plant regulatory elements. Nature Plants. PMID 31740772 DOI: 10.1038/S41477-019-0548-Z |
0.485 |
|
| 2019 |
Noshay JM, Anderson SN, Zhou P, Ji L, Ricci W, Lu Z, Stitzer MC, Crisp PA, Hirsch CN, Zhang X, Schmitz RJ, Springer NM. Monitoring the interplay between transposable element families and DNA methylation in maize. Plos Genetics. 15: e1008291. PMID 31498837 DOI: 10.1371/Journal.Pgen.1008291 |
0.506 |
|
| 2019 |
Bewick AJ, Zhang Y, Wendte JM, Zhang X, Schmitz RJ. Evolutionary and Experimental Loss of Gene Body Methylation and Its Consequence to Gene Expression. G3 (Bethesda, Md.). PMID 31147389 DOI: 10.1534/G3.119.400365 |
0.341 |
|
| 2018 |
Lu Z, Ricci WA, Schmitz RJ, Zhang X. Identification of cis-regulatory elements by chromatin structure. Current Opinion in Plant Biology. 42: 90-94. PMID 29704803 DOI: 10.1016/J.Pbi.2018.04.004 |
0.439 |
|
| 2017 |
Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S, He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, ... ... Zhang X, et al. Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. Nature Genetics. PMID 28825728 DOI: 10.1038/Ng.3937 |
0.423 |
|
| 2017 |
Chen L, Luo J, Cui Z, Xue M, Wang L, Zhang X, Pawlowski WP, He Y. ATX3, ATX4, and ATX5 encode putative H3K4 methyltransferases and are critical for plant development. Plant Physiology. PMID 28550207 DOI: 10.1104/Pp.16.01944 |
0.458 |
|
| 2016 |
Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, ... ... Zhang X, et al. On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 113: 9111-6. PMID 27457936 DOI: 10.1073/Pnas.1604666113 |
0.678 |
|
| 2016 |
Ricci WA, Zhang X. Public Service by a Selfish Gene: A Domesticated Transposase Antagonizes Polycomb Function. Plos Genetics. 12: e1006014. PMID 27253527 DOI: 10.1371/Journal.Pgen.1006014 |
0.461 |
|
| 2016 |
Seymour M, Ji L, Santos AM, Kamei M, Sasaki T, Basenko EY, Schmitz RJ, Zhang X, Lewis ZA. Histone H1 Limits DNA Methylation in Neurospora crassa. G3 (Bethesda, Md.). PMID 27172195 DOI: 10.1534/G3.116.028324 |
0.48 |
|
| 2016 |
Cui X, Lu F, Qiu Q, Zhou B, Gu L, Zhang S, Kang Y, Cui X, Ma X, Yao Q, Ma J, Zhang X, Cao X. REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis. Nature Genetics. PMID 27111035 DOI: 10.1038/Ng.3556 |
0.496 |
|
| 2016 |
Tong Z, Wang Y, Zhang X, Kim DD, Sadhukhan S, Hao Q, Lin H. SIRT7 is activated by DNA and deacetylates histone H3 in the chromatin context. Acs Chemical Biology. PMID 26907567 DOI: 10.1021/Acschembio.5B01084 |
0.31 |
|
| 2015 |
Bewick AJ, Hofmeister BT, Lee K, Zhang X, Hall DW, Schmitz RJ. FASTmC: A Suite of Predictive Models for Non-Reference-Based Estimations of DNA Methylation. G3 (Bethesda, Md.). PMID 26681520 DOI: 10.1534/G3.115.025668 |
0.464 |
|
| 2015 |
Xu H, Zuo P, Wang S, Zhou L, Sun X, Hu M, Liu B, Wu Q, Dou H, Liu B, Zhu F, Teng S, Zhang X, Wang L, Li Q, et al. Striatal dopamine release in a schizophrenia mouse model measured by electrochemical amperometry in vivo. The Analyst. 140: 3840-5. PMID 25651802 DOI: 10.1039/C4An02074J |
0.411 |
|
| 2015 |
Dou H, Wang C, Wu X, Yao L, Zhang X, Teng S, Xu H, Liu B, Wu Q, Zhang Q, Hu M, Wang Y, Wang L, Wu Y, Shang S, et al. Calcium influx activates adenylyl cyclase 8 for sustained insulin secretion in rat pancreatic beta cells. Diabetologia. 58: 324-33. PMID 25381556 DOI: 10.1007/S00125-014-3437-Z |
0.399 |
|
| 2014 |
Gent JI, Madzima TF, Bader R, Kent MR, Zhang X, Stam M, McGinnis KM, Dawe RK. Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation. The Plant Cell. 26: 4903-17. PMID 25465407 DOI: 10.1105/Tpc.114.130427 |
0.518 |
|
| 2014 |
Kang X, Xu H, Teng S, Zhang X, Deng Z, Zhou L, Zuo P, Liu B, Liu B, Wu Q, Wang L, Hu M, Dou H, Liu W, Zhu F, et al. Dopamine release from transplanted neural stem cells in Parkinsonian rat striatum in vivo. Proceedings of the National Academy of Sciences of the United States of America. 111: 15804-9. PMID 25331880 DOI: 10.1073/Pnas.1408484111 |
0.467 |
|
| 2014 |
Xu Y, Gan ES, Zhou J, Wee WY, Zhang X, Ito T. Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes. Nucleic Acids Research. 42: 10960-74. PMID 25183522 DOI: 10.1093/Nar/Gku781 |
0.418 |
|
| 2014 |
Wang L, Zhang X, Xu H, Zhou L, Jiao R, Liu W, Zhu F, Kang X, Liu B, Teng S, Wu Q, Li M, Dou H, Zuo P, Wang C, et al. Temporal components of cholinergic terminal to dopaminergic terminal transmission in dorsal striatum slices of mice. The Journal of Physiology. 592: 3559-76. PMID 24973407 DOI: 10.1113/Jphysiol.2014.271825 |
0.399 |
|
| 2014 |
Wang L, Shang S, Kang X, Teng S, Zhu F, Liu B, Wu Q, Li M, Liu W, Xu H, Zhou L, Jiao R, Dou H, Zuo P, Zhang X, et al. Modulation of dopamine release in the striatum by physiologically relevant levels of nicotine. Nature Communications. 5: 3925. PMID 24968237 DOI: 10.1038/Ncomms4925 |
0.382 |
|
| 2014 |
Sequeira-Mendes J, Aragüez I, Peiró R, Mendez-Giraldez R, Zhang X, Jacobsen SE, Bastolla U, Gutierrez C. The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States. The Plant Cell. 26: 2351-2366. PMID 24934173 DOI: 10.1105/Tpc.114.124578 |
0.642 |
|
| 2014 |
Schmitz RJ, Zhang X. Decoding the Epigenomes of Herbaceous Plants Advances in Botanical Research. 69: 247-277. DOI: 10.1016/B978-0-12-417163-3.00010-X |
0.493 |
|
| 2013 |
Gent JI, Ellis NA, Guo L, Harkess AE, Yao Y, Zhang X, Dawe RK. CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Research. 23: 628-37. PMID 23269663 DOI: 10.1101/Gr.146985.112 |
0.548 |
|
| 2012 |
Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM. Spreading of heterochromatin is limited to specific families of maize retrotransposons. Plos Genetics. 8: e1003127. PMID 23271981 DOI: 10.1371/Journal.Pgen.1003127 |
0.483 |
|
| 2012 |
Zhang X. Dynamic differential methylation facilitates pathogen stress response in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 109: 12842-3. PMID 22837399 DOI: 10.1073/Pnas.1210292109 |
0.481 |
|
| 2011 |
Schmitz RJ, Zhang X. High-throughput approaches for plant epigenomic studies. Current Opinion in Plant Biology. 14: 130-6. PMID 21470901 DOI: 10.1016/J.Pbi.2011.03.010 |
0.496 |
|
| 2011 |
Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nature Structural & Molecular Biology. 18: 395-400. PMID 21297636 DOI: 10.1038/Nsmb.1988 |
0.658 |
|
| 2010 |
Guo L, Yu Y, Law JA, Zhang X. SET DOMAIN GROUP2 is the major histone H3 lysine [corrected] 4 trimethyltransferase in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 107: 18557-62. PMID 20937886 DOI: 10.1073/Pnas.1010478107 |
0.749 |
|
| 2010 |
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, ... ... Zhang X, et al. Relationship between nucleosome positioning and DNA methylation. Nature. 466: 388-92. PMID 20512117 DOI: 10.1038/Nature09147 |
0.793 |
|
| 2010 |
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. Conservation and divergence of methylation patterning in plants and animals. Proceedings of the National Academy of Sciences of the United States of America. 107: 8689-94. PMID 20395551 DOI: 10.1073/Pnas.1002720107 |
0.676 |
|
| 2009 |
Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biology. 10: R62. PMID 19508735 DOI: 10.1186/Gb-2009-10-6-R62 |
0.792 |
|
| 2009 |
Schmitz RJ, Tamada Y, Doyle MR, Zhang X, Amasino RM. Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis. Plant Physiology. 149: 1196-204. PMID 19091875 DOI: 10.1104/Pp.108.131508 |
0.421 |
|
| 2008 |
Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. Plos One. 3: e3156. PMID 18776934 DOI: 10.1371/Journal.Pone.0003156 |
0.809 |
|
| 2008 |
Hashimoto H, Horton JR, Zhang X, Bostick M, Jacobsen SE, Cheng X. The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature. 455: 826-9. PMID 18772888 DOI: 10.1038/Nature07280 |
0.571 |
|
| 2008 |
Zhang X. The epigenetic landscape of plants. Science (New York, N.Y.). 320: 489-92. PMID 18436779 DOI: 10.1126/Science.1153996 |
0.505 |
|
| 2008 |
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 452: 215-9. PMID 18278030 DOI: 10.1038/Nature06745 |
0.684 |
|
| 2007 |
Zhang X, Germann S, Blus BJ, Khorasanizadeh S, Gaudin V, Jacobsen SE. The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nature Structural & Molecular Biology. 14: 869-71. PMID 17676062 DOI: 10.1038/Nsmb1283 |
0.619 |
|
| 2007 |
Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. Plos Biology. 5: e129. PMID 17439305 DOI: 10.1371/Journal.Pbio.0050129 |
0.802 |
|
| 2007 |
Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. Role of RNA polymerase IV in plant small RNA metabolism. Proceedings of the National Academy of Sciences of the United States of America. 104: 4536-41. PMID 17360559 DOI: 10.1073/Pnas.0611456104 |
0.673 |
|
| 2007 |
Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Current Biology : Cb. 17: 379-84. PMID 17239600 DOI: 10.1016/J.Cub.2007.01.009 |
0.717 |
|
| 2006 |
Zhang X, Jacobsen SE. Genetic analyses of DNA methyltransferases in Arabidopsis thaliana. Cold Spring Harbor Symposia On Quantitative Biology. 71: 439-47. PMID 17381326 DOI: 10.1101/sqb.2006.71.047 |
0.648 |
|
| 2006 |
Deragon JM, Zhang X. Short interspersed elements (SINEs) in plants: origin, classification, and use as phylogenetic markers. Systematic Biology. 55: 949-56. PMID 17345676 DOI: 10.1080/10635150601047843 |
0.314 |
|
| 2006 |
Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. Plos Biology. 4: e363. PMID 17105345 DOI: 10.1371/Journal.Pbio.0040363 |
0.79 |
|
| 2006 |
Holligan D, Zhang X, Jiang N, Pritham EJ, Wessler SR. The transposable element landscape of the model legume Lotus japonicus. Genetics. 174: 2215-28. PMID 17028332 DOI: 10.1534/Genetics.106.062752 |
0.781 |
|
| 2006 |
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 126: 1189-201. PMID 16949657 DOI: 10.1016/J.Cell.2006.08.003 |
0.799 |
|
| 2006 |
Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. Plos Genetics. 2: e83. PMID 16741558 DOI: 10.1371/Journal.Pgen.0020083 |
0.787 |
|
| 2006 |
Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nature Genetics. 38: 721-5. PMID 16699516 DOI: 10.1038/Ng1804 |
0.694 |
|
| 2006 |
Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science (New York, N.Y.). 311: 395-8. PMID 16424344 DOI: 10.1126/Science.1120976 |
0.643 |
|
| 2005 |
Zhang X, Wessler SR. BoS: a large and diverse family of short interspersed elements (SINEs) in Brassica oleracea. Journal of Molecular Evolution. 60: 677-87. PMID 15983875 DOI: 10.1007/S00239-004-0259-5 |
0.576 |
|
| 2004 |
Jiang N, Bao Z, Zhang X, Eddy SR, Wessler SR. Pack-MULE transposable elements mediate gene evolution in plants. Nature. 431: 569-73. PMID 15457261 DOI: 10.1038/Nature02953 |
0.703 |
|
| 2004 |
Zhang X, Wessler SR. Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Proceedings of the National Academy of Sciences of the United States of America. 101: 5589-94. PMID 15064405 DOI: 10.1073/Pnas.0401243101 |
0.621 |
|
| 2004 |
Zhang X, Jiang N, Feschotte C, Wessler SR. PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements. Genetics. 166: 971-86. PMID 15020481 DOI: 10.1534/Genetics.166.2.971 |
0.743 |
|
| 2004 |
Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 112: 308-15. PMID 15014946 DOI: 10.1007/S00412-004-0275-7 |
0.591 |
|
| 2004 |
Jiang N, Feschotte C, Zhang X, Wessler SR. Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Current Opinion in Plant Biology. 7: 115-9. PMID 15003209 DOI: 10.1016/J.Pbi.2004.01.004 |
0.721 |
|
| 2003 |
Jiang N, Bao Z, Zhang X, Hirochika H, Eddy SR, McCouch SR, Wessler SR. An active DNA transposon family in rice. Nature. 421: 163-7. PMID 12520302 DOI: 10.1038/Nature01214 |
0.668 |
|
| 2001 |
Zhang X, Feschotte C, Zhang Q, Jiang N, Eggleston WB, Wessler SR. P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases. Proceedings of the National Academy of Sciences of the United States of America. 98: 12572-7. PMID 11675493 DOI: 10.1073/Pnas.211442198 |
0.747 |
|
| Show low-probability matches. |