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Bjarni J. Vilhjalmsson, Ph.D. - Publications

Affiliations: 
2011 Computational Molecular Biology University of Southern California, Los Angeles, CA, United States 
Area:
Genetics, Botany Biology, Epidemiology
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pedersen EM, Agerbo E, Plana-Ripoll O, Steinbach J, Krebs MD, Hougaard DM, Werge T, Nordentoft M, Børglum AD, Musliner KL, Ganna A, Schork AJ, Mortensen PB, McGrath JJ, Privé F, et al. ADuLT: An efficient and robust time-to-event GWAS. Nature Communications. 14: 5553. PMID 37689771 DOI: 10.1038/s41467-023-41210-z  0.303
2023 Sigurdsson AI, Louloudis I, Banasik K, Westergaard D, Winther O, Lund O, Ostrowski SR, Erikstrup C, Pedersen OBV, Nyegaard M, Brunak S, Vilhjálmsson BJ, Rasmussen S. Deep integrative models for large-scale human genomics. Nucleic Acids Research. PMID 37224538 DOI: 10.1093/nar/gkad373  0.353
2023 Ding Y, Hou K, Xu Z, Pimplaskar A, Petter E, Boulier K, Privé F, Vilhjálmsson BJ, Olde Loohuis LM, Pasaniuc B. Polygenic scoring accuracy varies across the genetic ancestry continuum. Nature. PMID 37198491 DOI: 10.1038/s41586-023-06079-4  0.379
2022 Privé F, Aschard H, Carmi S, Folkersen L, Hoggart C, O'Reilly PF, Vilhjálmsson BJ. Portability of 245 polygenic scores when derived from the UK Biobank and applied to 9 ancestry groups from the same cohort. American Journal of Human Genetics. 109: 12-23. PMID 34995502 DOI: 10.1016/j.ajhg.2021.11.008  0.304
2021 Julienne H, Laville V, McCaw ZR, He Z, Guillemot V, Lasry C, Ziyatdinov A, Nerin C, Vaysse A, Lechat P, Ménager H, Le Goff W, Dube MP, Kraft P, Ionita-Laza I, et al. Multitrait GWAS to connect disease variants and biological mechanisms. Plos Genetics. 17: e1009713. PMID 34460823 DOI: 10.1371/journal.pgen.1009713  0.381
2021 Zhang Q, Privé F, Vilhjálmsson B, Speed D. Improved genetic prediction of complex traits from individual-level data or summary statistics. Nature Communications. 12: 4192. PMID 34234142 DOI: 10.1038/s41467-021-24485-y  0.338
2021 Albiñana C, Grove J, McGrath JJ, Agerbo E, Wray NR, Bulik CM, Nordentoft M, Hougaard DM, Werge T, Børglum AD, Mortensen PB, Privé F, Vilhjálmsson BJ. Leveraging both individual-level genetic data and GWAS summary statistics increases polygenic prediction. American Journal of Human Genetics. PMID 33964208 DOI: 10.1016/j.ajhg.2021.04.014  0.306
2021 Privé F, Zhu Z, Vilhjalmsson BJ. Finding hidden treasures in summary statistics from genome-wide association studies. Nature Genetics. 53: 431-432. PMID 33833451 DOI: 10.1038/s41588-021-00824-z  0.339
2020 Privé F, Arbel J, Vilhjálmsson BJ. LDpred2: better, faster, stronger. Bioinformatics (Oxford, England). PMID 33326037 DOI: 10.1093/bioinformatics/btaa1029  0.327
2020 Privé F, Luu K, Blum MGB, McGrath JJ, Vilhjálmsson BJ. Efficient toolkit implementing best practices for principal component analysis of population genetic data. Bioinformatics (Oxford, England). PMID 32415959 DOI: 10.1093/Bioinformatics/Btaa520  0.43
2020 Engemann K, Pedersen CB, Agerbo E, Arge L, Børglum AD, Erikstrup C, Hertel O, Hougaard DM, McGrath JJ, Mors O, Mortensen PB, Nordentoft M, Sabel CE, Sigsgaard T, Tsirogiannis C, et al. Association Between Childhood Green Space, Genetic Liability, and the Incidence of Schizophrenia. Schizophrenia Bulletin. PMID 32415773 DOI: 10.1093/Schbul/Sbaa058  0.312
2020 Privé F, Luu K, Vilhjálmsson BJ, Blum MGB. Performing highly efficient genome scans for local adaptation with R package pcadapt version 4. Molecular Biology and Evolution. PMID 32343802 DOI: 10.1093/Molbev/Msaa053  0.329
2020 Julienne H, Lechat P, Guillemot V, Lasry C, Yao C, Araud R, Laville V, Vilhjalmsson B, Ménager H, Aschard H. JASS: command line and web interface for the joint analysis of GWAS results. Nar Genomics and Bioinformatics. 2: lqaa003. PMID 32002517 DOI: 10.1093/nargab/lqaa003  0.418
2020 Shah N, Wakabayashi T, Kawamura Y, Skovbjerg CK, Wang MZ, Mustamin Y, Isomura Y, Gupta V, Jin H, Mun T, Sandal N, Azuma F, Fukai E, Seren Ü, Kusakabe S, ... ... Vilhjalmsson B, et al. Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan. Nature Communications. 11: 253. PMID 31937774 DOI: 10.1038/S41467-019-14213-Y  0.563
2019 Vilhjálmsson BJ, Privé F. Headaches and polygenic scores. Neurology. Genetics. 5: e368. PMID 31872052 DOI: 10.1212/Nxg.0000000000000368  0.333
2019 Besenbacher S, Mailund T, Vilhjálmsson BJ, Schierup MH. Association Mapping and Disease: Evolutionary Perspectives. Methods in Molecular Biology (Clifton, N.J.). 1910: 533-553. PMID 31278676 DOI: 10.1007/978-1-4939-9074-0_17  0.398
2019 Duszynska D, Vilhjalmsson B, Castillo Bravo R, Swamidatta S, Juenger TE, Donoghue MTA, Comte A, Nordborg M, Sharbel TF, Brychkova G, McKeown PC, Spillane C. Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids. Plant Reproduction. PMID 30903284 DOI: 10.1007/S00497-019-00369-6  0.558
2018 Zheng J, Richardson TG, Millard LAC, Hemani G, Elsworth BL, Raistrick CA, Vilhjalmsson B, Neale BM, Haycock PC, Smith GD, Gaunt TR. PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics. Gigascience. 7. PMID 30165448 DOI: 10.1093/Gigascience/Giy090  0.44
2018 Kong A, Thorleifsson G, Frigge ML, Vilhjalmsson BJ, Young AI, Thorgeirsson TE, Benonisdottir S, Oddsson A, Halldorsson BV, Masson G, Gudbjartsson DF, Helgason A, Bjornsdottir G, Thorsteinsdottir U, Stefansson K. The nature of nurture: Effects of parental genotypes. Science (New York, N.Y.). 359: 424-428. PMID 29371463 DOI: 10.1126/Science.Aan6877  0.363
2017 Aschard H, Guillemot V, Vilhjalmsson B, Patel CJ, Skurnik D, Ye CJ, Wolpin B, Kraft P, Zaitlen N. Covariate selection for association screening in multiphenotype genetic studies. Nature Genetics. PMID 29038595 DOI: 10.1038/Ng.3975  0.479
2016 Athanasiadis G, Cheng JY, Vilhjálmsson BJ, Jørgensen FG, Als TD, Le Hellard S, Espeseth T, Sullivan PF, Hultman CM, Kjærgaard PC, Schierup MH, Mailund T. Nationwide Genomic Study in Denmark Reveals Remarkable Population Homogeneity. Genetics. PMID 27535931 DOI: 10.1534/Genetics.116.189241  0.424
2016 Aschard H, Vilhjálmsson BJ, Joshi AD, Price AL, Kraft P. Response to Day et al. American Journal of Human Genetics. 98: 394-5. PMID 26849115 DOI: 10.1016/J.Ajhg.2015.12.020  0.307
2015 Dubin MJ, Zhang P, Meng D, Remigereau MS, Osborne EJ, Paolo Casale F, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, et al. DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation. Elife. 4: e05255. PMID 25939354 DOI: 10.7554/Elife.05255  0.611
2015 Hayeck TJ, Zaitlen NA, Loh PR, Vilhjalmsson B, Pollack S, Gusev A, Yang J, Chen GB, Goddard ME, Visscher PM, Patterson N, Price AL. Mixed model with correction for case-control ascertainment increases association power. American Journal of Human Genetics. 96: 720-30. PMID 25892111 DOI: 10.1016/J.Ajhg.2015.03.004  0.324
2015 Agerbo E, Sullivan PF, Vilhjálmsson BJ, Pedersen CB, Mors O, Børglum AD, Hougaard DM, Hollegaard MV, Meier S, Mattheisen M, Ripke S, Wray NR, Mortensen PB. Polygenic Risk Score, Parental Socioeconomic Status, Family History of Psychiatric Disorders, and the Risk for Schizophrenia: A Danish Population-Based Study and Meta-analysis. Jama Psychiatry. 72: 635-41. PMID 25830477 DOI: 10.1001/Jamapsychiatry.2015.0346  0.303
2015 Loh PR, Tucker G, Bulik-Sullivan BK, Vilhjálmsson BJ, Finucane HK, Salem RM, Chasman DI, Ridker PM, Neale BM, Berger B, Patterson N, Price AL. Efficient Bayesian mixed-model analysis increases association power in large cohorts. Nature Genetics. 47: 284-90. PMID 25642633 DOI: 10.1038/Ng.3190  0.432
2015 Aschard H, Vilhjálmsson BJ, Joshi AD, Price AL, Kraft P. Adjusting for heritable covariates can bias effect estimates in genome-wide association studies. American Journal of Human Genetics. 96: 329-39. PMID 25640676 DOI: 10.1016/J.Ajhg.2014.12.021  0.499
2015 Dubin MJ, Zhang P, Meng D, Remigereau M, Osborne EJ, Casale FP, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, et al. Author response: DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation Elife. DOI: 10.7554/Elife.05255.031  0.605
2014 Gusev A, Lee SH, Trynka G, Finucane H, Vilhjálmsson BJ, Xu H, Zang C, Ripke S, Bulik-Sullivan B, Stahl E, Kähler AK, Hultman CM, Purcell SM, et al. Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases. American Journal of Human Genetics. 95: 535-52. PMID 25439723 DOI: 10.1016/J.Ajhg.2014.10.004  0.456
2014 Horton MW, Bodenhausen N, Beilsmith K, Meng D, Muegge BD, Subramanian S, Vetter MM, Vilhjálmsson BJ, Nordborg M, Gordon JI, Bergelson J. Genome-wide association study of Arabidopsis thaliana leaf microbial community. Nature Communications. 5: 5320. PMID 25382143 DOI: 10.1038/Ncomms6320  0.623
2014 Aschard H, Vilhjálmsson BJ, Greliche N, Morange PE, Trégouët DA, Kraft P. Maximizing the power of principal-component analysis of correlated phenotypes in genome-wide association studies. American Journal of Human Genetics. 94: 662-76. PMID 24746957 DOI: 10.1016/J.Ajhg.2014.03.016  0.468
2014 He BZ, Ludwig MZ, Dickerson DA, Barse L, Arun B, Vilhjálmsson BJ, Jiang P, Park SY, Tamarina NA, Selleck SB, Wittkopp PJ, Bell GI, Kreitman M. Effect of genetic variation in a Drosophila model of diabetes-associated misfolded human proinsulin. Genetics. 196: 557-67. PMID 24281155 DOI: 10.1534/Genetics.113.157800  0.472
2013 Gusev A, Bhatia G, Zaitlen N, Vilhjalmsson BJ, Diogo D, Stahl EA, Gregersen PK, Worthington J, Klareskog L, Raychaudhuri S, Plenge RM, Pasaniuc B, Price AL. Quantifying missing heritability at known GWAS loci. Plos Genetics. 9: e1003993. PMID 24385918 DOI: 10.1371/Journal.Pgen.1003993  0.411
2013 Long Q, Rabanal FA, Meng D, Huber CD, Farlow A, Platzer A, Zhang Q, Vilhjálmsson BJ, Korte A, Nizhynska V, Voronin V, Korte P, Sedman L, Mandáková T, Lysak MA, et al. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nature Genetics. 45: 884-90. PMID 23793030 DOI: 10.1038/Ng.2678  0.665
2013 Beleza S, Johnson NA, Candille SI, Absher DM, Coram MA, Lopes J, Campos J, Araújo II, Anderson TM, Vilhjálmsson BJ, Nordborg M, Correia E Silva A, Shriver MD, Rocha J, Barsh GS, et al. Genetic architecture of skin and eye color in an African-European admixed population. Plos Genetics. 9: e1003372. PMID 23555287 DOI: 10.1371/Journal.Pgen.1003372  0.622
2013 Long Q, Zhang Q, Vilhjalmsson BJ, Forai P, Seren Ü, Nordborg M. JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models. Bioinformatics (Oxford, England). 29: 1220-2. PMID 23479353 DOI: 10.1093/Bioinformatics/Btt122  0.591
2013 Vilhjálmsson BJ, Nordborg M. The nature of confounding in genome-wide association studies. Nature Reviews. Genetics. 14: 1-2. PMID 23165185 DOI: 10.1038/Nrg3382  0.683
2012 Seren Ü, Vilhjálmsson BJ, Horton MW, Meng D, Forai P, Huang YS, Long Q, Segura V, Nordborg M. GWAPP: a web application for genome-wide association mapping in Arabidopsis. The Plant Cell. 24: 4793-805. PMID 23277364 DOI: 10.1105/Tpc.112.108068  0.713
2012 Korte A, Vilhjálmsson BJ, Segura V, Platt A, Long Q, Nordborg M. A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nature Genetics. 44: 1066-71. PMID 22902788 DOI: 10.1038/Ng.2376  0.705
2012 Segura V, Vilhjálmsson BJ, Platt A, Korte A, Seren Ãœ, Long Q, Nordborg M. An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nature Genetics. 44: 825-30. PMID 22706313 DOI: 10.1038/Ng.2314  0.667
2012 Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics. 44: 212-6. PMID 22231484 DOI: 10.1038/Ng.1042  0.763
2011 Huang YS, Horton M, Vilhjálmsson BJ, Seren U, Meng D, Meyer C, Ali Amer M, Borevitz JO, Bergelson J, Nordborg M. Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies. Database : the Journal of Biological Databases and Curation. 2011: bar014. PMID 21609965 DOI: 10.1093/Database/Bar014  0.641
2010 Platt A, Vilhjálmsson BJ, Nordborg M. Conditions under which genome-wide association studies will be positively misleading. Genetics. 186: 1045-52. PMID 20813880 DOI: 10.1534/Genetics.110.121665  0.701
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  0.71
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