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Isabelle M. Henry, Ph.D. - Publications

Affiliations: 
2006 University of Washington, Seattle, Seattle, WA 
Area:
Botany Biology, Genetics
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sonsungsan P, Nganga ML, Lieberman M, Amundson K, Stewart V, Plaimas K, Comai L, Henry I. A K-mer based Bulked Segregant Analysis approach to map seed traits in unphased heterozygous potato genomes. G3 (Bethesda, Md.). PMID 38366577 DOI: 10.1093/g3journal/jkae035  0.629
2023 Akagi T, Varkonyi-Gasic E, Shirasawa K, Catanach A, Henry IM, Mertten D, Datson P, Masuda K, Fujita N, Kuwada E, Ushijima K, Beppu K, Allan AC, Charlesworth D, Kataoka I. Recurrent neo-sex chromosome evolution in kiwifruit. Nature Plants. PMID 36879018 DOI: 10.1038/s41477-023-01361-9  0.382
2022 Pochon G, Henry IM, Yang C, Lory N, Fernández-Jiménez N, Böwer F, Hu B, Carstens L, Tsai HT, Pradillo M, Comai L, Schnittger A. The Hop1 homolog ASY1 mediates cross-over assurance and interference. Pnas Nexus. 2: pgac302. PMID 36992817 DOI: 10.1093/pnasnexus/pgac302  0.661
2022 Guo W, Comai L, Henry IM. Chromoanagenesis in plants: triggers, mechanisms, and potential impact. Trends in Genetics : Tig. PMID 36055901 DOI: 10.1016/j.tig.2022.08.003  0.643
2022 Guo W, Comai L, Henry IM. Chromoanagenesis in the asy1 meiotic mutant of Arabidopsis. G3 (Bethesda, Md.). PMID 35920777 DOI: 10.1093/g3journal/jkac185  0.664
2022 Kippes N, Tsai H, Lieberman M, Culp D, McCormack B, Wilson RG, Dowd E, Comai L, Henry IM. Author Correction: Diploid mint (M. longifolia) can produce spearmint type oil with a high yield potential. Scientific Reports. 12: 1006. PMID 35027635 DOI: 10.1038/s41598-022-05238-3  0.46
2021 Kippes N, Tsai H, Lieberman M, Culp D, McCormack B, Wilson RG, Dowd E, Comai L, Henry IM. Diploid mint (M. longifolia) can produce spearmint type oil with a high yield potential. Scientific Reports. 11: 23521. PMID 34876628 DOI: 10.1038/s41598-021-02835-6  0.493
2021 Comai L, Amundson KR, Ordoñez B, Zhao X, Braz GT, Jiang J, Henry IM. LD-CNV: rapid and simple discovery of chromosomal translocations using linkage disequilibrium between copy number variable loci. Genetics. 219. PMID 34740239 DOI: 10.1093/genetics/iyab137  0.677
2021 Tsai H, Kippes N, Firl A, Lieberman M, Comai L, Henry IM. Efficient construction of a linkage map and haplotypes for Mentha suaveolens using sequence capture. G3 (Bethesda, Md.). 11. PMID 34544134 DOI: 10.1093/g3journal/jkab232  0.587
2021 Guo W, Comai L, Henry IM. Chromoanagenesis from radiation-induced genome damage in Populus. Plos Genetics. 17: e1009735. PMID 34432802 DOI: 10.1371/journal.pgen.1009735  0.659
2021 Amundson KR, Ordoñez B, Santayana M, Nganga ML, Henry IM, Bonierbale M, Khan A, Tan EH, Comai L. Rare instances of haploid inducer DNA in potato dihaploids and ploidy-dependent genome instability. The Plant Cell. PMID 33792719 DOI: 10.1093/plcell/koab100  0.66
2020 Bastiaanse H, Henry IM, Tsai H, Lieberman M, Canning C, Comai L, Groover A. A systems genetics approach to deciphering the effect of dosage variation on leaf morphology in Populus. The Plant Cell. PMID 33793772 DOI: 10.1093/plcell/koaa016  0.648
2020 Masuda K, Yamamoto E, Shirasawa K, Onoue N, Kono A, Ushijima K, Kubo Y, Tao R, Henry IM, Akagi T. Genome-wide study on the polysomic genetic factors conferring plasticity of flower sexuality in hexaploid persimmon. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 27. PMID 32761076 DOI: 10.1093/Dnares/Dsaa012  0.473
2020 Akagi T, Shirasawa K, Nagasaki H, Hirakawa H, Tao R, Comai L, Henry IM. Correction: The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants. Plos Genetics. 16: e1008845. PMID 32453757 DOI: 10.1371/Journal.Pgen.1008845  0.636
2020 Akagi T, Shirasawa K, Nagasaki H, Hirakawa H, Tao R, Comai L, Henry IM. The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants. Plos Genetics. 16: e1008566. PMID 32069274 DOI: 10.1371/Journal.Pgen.1008566  0.714
2020 Dahlhausen KE, Coil DA, Comai L, Henry IM. Flower Power: A Close Look at Plant Reproduction Frontiers For Young Minds. 8. DOI: 10.3389/Frym.2020.00008  0.564
2019 Amundson KR, Ordoñez B, Santayana M, Tan EH, Henry IM, Mihovilovich E, Bonierbale M, Comai L. Genomic Outcomes of Haploid Induction Crosses in Potato ( L.). Genetics. PMID 31871130 DOI: 10.1534/Genetics.119.302843  0.711
2019 Akagi T, Pilkington SM, Varkonyi-Gasic E, Henry IM, Sugano SS, Sonoda M, Firl A, McNeilage MA, Douglas MJ, Wang T, Rebstock R, Voogd C, Datson P, Allan AC, Beppu K, et al. Two Y-chromosome-encoded genes determine sex in kiwifruit. Nature Plants. 5: 801-809. PMID 31383971 DOI: 10.1038/S41477-019-0489-6  0.526
2019 Bastiaanse H, Zinkgraf M, Canning C, Tsai H, Lieberman M, Comai L, Henry I, Groover A. A comprehensive genomic scan reveals gene dosage balance impacts on quantitative traits in trees. Proceedings of the National Academy of Sciences of the United States of America. PMID 31213538 DOI: 10.1073/Pnas.1903229116  0.71
2018 Henry IM, Akagi T, Tao R, Comai L. One Hundred Ways to Invent the Sexes: Theoretical and Observed Paths to Dioecy in Plants. Annual Review of Plant Biology. 69: 553-575. PMID 29719167 DOI: 10.1146/Annurev-Arplant-042817-040615  0.646
2018 Akagi T, Henry IM, Ohtani H, Morimoto T, Beppu K, Kataoka I, Tao R. A Y-encoded suppressor of feminization arose via lineage-specific duplication of a cytokinin response regulator in kiwifruit. The Plant Cell. PMID 29626069 DOI: 10.1105/Tpc.17.00787  0.496
2018 Henry IM, Comai L, Tan EH. Detection of Chromothripsis in Plants. Methods in Molecular Biology (Clifton, N.J.). 1769: 119-132. PMID 29564821 DOI: 10.1007/978-1-4939-7780-2_8  0.701
2016 Zinkgraf M, Haiby K, Lieberman MC, Comai L, Henry IM, Groover A. Creation and Genomic Analysis of Irradiation Hybrids in Populus. Current Protocols in Plant Biology. 1: 431-450. PMID 30775870 DOI: 10.1002/cppb.20025  0.677
2016 Akagi T, Henry IM, Kawai T, Comai L, Tao R. Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon. The Plant Cell. PMID 27956470 DOI: 10.1105/Tpc.16.00532  0.6
2016 Jiang WZ, Henry IM, Lynagh PG, Comai L, Cahoon EB, Weeks DP. Significant enhancement of fatty acid composition in seeds of the allohexaploid, Camelina sativa, using CRISPR/Cas9 gene editing. Plant Biotechnology Journal. PMID 27862889 DOI: 10.1111/Pbi.12663  0.573
2016 Huo H, Henry IM, Coppoolse ER, Verhoef-Post M, Schut JW, de Rooij H, Vogelaar A, Joosen RV, Woudenberg L, Comai L, Bradford KJ. Rapid Identification of Lettuce Seed Germination Mutants by Bulked Segregant Analysis and Whole Genome Sequencing. The Plant Journal : For Cell and Molecular Biology. PMID 27406937 DOI: 10.1111/Tpj.13267  0.644
2016 Akagi T, Henry IM, Morimoto T, Tao R. Insights into the Prunus-specific S-RNase-based self-incompatibility system from a genome-wide analysis of the evolutionary radiation of S locus-related F-box genes. Plant & Cell Physiology. PMID 27081098 DOI: 10.1093/Pcp/Pcw077  0.409
2016 Tan E, Comai L, Henry I. Chromosome Dosage Analysis in Plants Using Whole Genome Sequencing Bio-Protocol. 6. DOI: 10.21769/BIOPROTOC.1854  0.669
2015 Inagaki S, Henry IM, Lieberman MC, Comai L. High-Throughput Analysis of T-DNA Location and Structure Using Sequence Capture. Plos One. 10: e0139672. PMID 26445462 DOI: 10.1371/Journal.Pone.0139672  0.578
2015 Henry IM, Zinkgraf MS, Groover AT, Comai L. A System for Dosage-Based Functional Genomics in Poplar. The Plant Cell. 27: 2370-83. PMID 26320226 DOI: 10.1105/Tpc.15.00349  0.709
2015 Tan EH, Henry IM, Ravi M, Bradnam KR, Mandakova T, Marimuthu MP, Korf I, Lysak MA, Comai L, Chan SW. Catastrophic chromosomal restructuring during genome elimination in plants. Elife. 4. PMID 25977984 DOI: 10.7554/Elife.06516  0.718
2015 O'Geen H, Henry IM, Bhakta MS, Meckler JF, Segal DJ. A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture. Nucleic Acids Research. 43: 3389-404. PMID 25712100 DOI: 10.1093/Nar/Gkv137  0.323
2015 Tan EH, Henry IM, Ravi M, Bradnam KR, Mandakova T, Marimuthu MP, Korf I, Lysak MA, Comai L, Chan SW. Author response: Catastrophic chromosomal restructuring during genome elimination in plants Elife. DOI: 10.7554/Elife.06516.029  0.69
2015 Tan EH, Henry IM, Ravi M, Bradnam KR, Mandakova T, Marimuthu MPA, Korf I, Lysak MA, Comai L, Chan SWL. Catastrophic chromosomal restructuring during genome elimination in plants Elife. 4. DOI: 10.7554/eLife.06516  0.672
2014 Akagi T, Henry IM, Tao R, Comai L. A y-chromosome-encoded small RNA acts as a sex determinant in persimmons Science. 346: 646-650. PMID 25359977 DOI: 10.1126/Science.1257225  0.662
2014 Ravi M, Marimuthu MP, Tan EH, Maheshwari S, Henry IM, Marin-Rodriguez B, Urtecho G, Tan J, Thornhill K, Zhu F, Panoli A, Sundaresan V, Britt AB, Comai L, Chan SW. A haploid genetics toolbox for Arabidopsis thaliana. Nature Communications. 5: 5334. PMID 25358957 DOI: 10.1038/Ncomms6334  0.654
2014 Dang TV, Windelinckx S, Henry IM, De Coninck B, Cammue BP, Swennen R, Remy S. Assessment of RNAi-induced silencing in banana (Musa spp.). Bmc Research Notes. 7: 655. PMID 25230584 DOI: 10.1186/1756-0500-7-655  0.312
2014 Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, Vasquez-Gross H, Akhunova A, Akhunov E, Dubcovsky J, Tai TH, Comai L. Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing. The Plant Cell. 26: 1382-1397. PMID 24728647 DOI: 10.1105/Tpc.113.121590  0.597
2014 Henry IM, Dilkes BP, Tyagi A, Gao J, Christensen B, Comai L. The BOY NAMED SUE quantitative trait locus confers increased meiotic stability to an adapted natural allopolyploid of Arabidopsis. The Plant Cell. 26: 181-94. PMID 24464296 DOI: 10.1105/Tpc.113.120626  0.799
2013 Bhakta MS, Henry IM, Ousterout DG, Das KT, Lockwood SH, Meckler JF, Wallen MC, Zykovich A, Yu Y, Leo H, Xu L, Gersbach CA, Segal DJ. Highly active zinc-finger nucleases by extended modular assembly. Genome Research. 23: 530-8. PMID 23222846 DOI: 10.1101/Gr.143693.112  0.339
2012 Podevin N, Krauss A, Henry I, Swennen R, Remy S. Selection and validation of reference genes for quantitative RT-PCR expression studies of the non-model crop Musa. Molecular Breeding : New Strategies in Plant Improvement. 30: 1237-1252. PMID 23024595 DOI: 10.1007/S11032-012-9711-1  0.378
2012 Seymour DK, Filiault DL, Henry IM, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SW, Maloof JN. Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proceedings of the National Academy of Sciences of the United States of America. 109: 4227-32. PMID 22371599 DOI: 10.1073/Pnas.1117277109  0.664
2012 Monson-Miller J, Sanchez-Mendez DC, Fass J, Henry IM, Tai TH, Comai L. Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing. Bmc Genomics. 13: 72. PMID 22333298 DOI: 10.1186/1471-2164-13-72  0.585
2011 Henry IM, Carpentier SC, Pampurova S, van Hoylandt A, Panis B, Swennen R, Remy S. Structure and regulation of the Asr gene family in banana Planta. 234: 785-798. PMID 21630042 DOI: 10.1007/S00425-011-1421-0  0.368
2011 Tyagi AP, Henry IM, Comai L. Retraction notice to ‘Detection aneuploidy in Arabidopsis thaliana using fluorescent in-situ hybridization (FISH) analysis’. [The South Pacific Journal of Natural and Applied Sciences 29 (2011), 12–16. doi:10.1071/SP11003] The South Pacific Journal of Natural and Applied Sciences. 29: 12. DOI: 10.1071/Sp11003Retract  0.701
2010 Henry IM, Dilkes BP, Miller ES, Burkart-Waco D, Comai L. Phenotypic consequences of aneuploidy in Arabidopsis thaliana Genetics. 186: 1231-1245. PMID 20876566 DOI: 10.1534/Genetics.110.121079  0.799
2010 Pignatta D, Dilkes BP, Yoo SY, Henry IM, Madlung A, Doerge RW, Jeffrey Chen Z, Comai L. Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling. The New Phytologist. 186: 194-206. PMID 20409178 DOI: 10.1111/J.1469-8137.2010.03198.X  0.783
2009 Henry IM, Dilkes BP, Tyagi AP, Lin HY, Comai L. Dosage and parent-of-origin effects shaping aneuploid swarms in A. thaliana Heredity. 103: 458-468. PMID 19603060 DOI: 10.1038/Hdy.2009.81  0.773
2007 Henry IM, Dilkes BP, Comai L. Genetic basis for dosage sensitivity in Arabidopsis thaliana Plos Genetics. 3. PMID 17465685 DOI: 10.1371/Journal.Pgen.0030070  0.795
2006 Henry IM, Dilkes BP, Comai L. Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction Plant Journal. 48: 307-319. PMID 16995901 DOI: 10.1111/J.1365-313X.2006.02871.X  0.781
2005 Henry IM, Dilkes BP, Young K, Watson B, Wu H, Comai L. Aneuploidy and genetic variation in the Arabidopsis thaliana triploid response Genetics. 170: 1979-1988. PMID 15944363 DOI: 10.1534/Genetics.104.037788  0.771
2005 Henry IM, Dilkes BP, Comai L. Genetic Basis for Dosage Sensitivity in A. thaliana Plos Genetics. DOI: 10.1371/Journal.Pgen.0030070.Eor  0.582
2004 Henry IM, Wilkinson MD, Hernandez JM, Schwarz-Sommer Z, Grotewold E, Mandoli DF. Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum. Bmc Plant Biology. 4: 3. PMID 15070428 DOI: 10.1186/1471-2229-4-3  0.312
2003 Henry IM, Mandoli DF. Precious cells contain precious information: strategies and pitfalls in expression analysis from a few cells. Methods in Molecular Biology (Clifton, N.J.). 236: 59-78. PMID 14501058 DOI: 10.1385/1-59259-413-1:59  0.376
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