| Year |
Citation |
Score |
| 2021 |
Yu L, Ma S, Zhang X, Tian D, Yang S, Jia X, Traw MB. Ancient rapid functional differentiation and fixation of the duplicated members in rice Dof genes after whole genome duplication. The Plant Journal : For Cell and Molecular Biology. 108: 1365-1381. PMID 34585814 DOI: 10.1111/tpj.15516 |
0.421 |
|
| 2021 |
Jia X, Zhang Q, Jiang M, Huang J, Yu L, Traw MB, Tian D, Hurst LD, Yang S. Mitotic gene conversion can be as important as meiotic conversion in driving genetic variability in plants and other species without early germline segregation. Plos Biology. 19: e3001164. PMID 33750968 DOI: 10.1371/journal.pbio.3001164 |
0.424 |
|
| 2020 |
Jia X, Yu L, Tang M, Tian D, Yang S, Zhang X, Traw MB. Pleiotropic changes revealed by in situ recovery of the semi-dwarf gene sd1 in rice. Journal of Plant Physiology. 248: 153141. PMID 32143117 DOI: 10.1016/J.Jplph.2020.153141 |
0.456 |
|
| 2019 |
MacQueen A, Tian D, Chang W, Holub E, Kreitman M, Bergelson J. Population Genetics of the Highly Polymorphic Gene Family. Genes. 10. PMID 31500388 DOI: 10.3390/Genes10090691 |
0.689 |
|
| 2019 |
Wang L, Zhao L, Zhang X, Zhang Q, Jia Y, Wang G, Li S, Tian D, Li WH, Yang S. Large-scale identification and functional analysis of genes in blast resistance in the Tetep rice genome sequence. Proceedings of the National Academy of Sciences of the United States of America. PMID 31451649 DOI: 10.1073/Pnas.1910229116 |
0.445 |
|
| 2019 |
Wang L, Ji Y, Hu Y, Hu H, Jia X, Jiang M, Zhang X, Zhao L, Zhang Y, Jia Y, Qin C, Yu L, Huang J, Yang S, Hurst LD, ... Tian D, et al. The architecture of intra-organism mutation rate variation in plants. Plos Biology. 17: e3000191. PMID 30964866 DOI: 10.1371/Journal.Pbio.3000191 |
0.338 |
|
| 2018 |
Jia X, Zhang Y, Zhang Q, Zhao Q, Traw MB, Wang L, Tian D, Wang C, Yang S. High resolution insight into recombination events at the SD1 locus in rice. The Plant Journal : For Cell and Molecular Biology. PMID 30417595 DOI: 10.1111/Tpj.14154 |
0.528 |
|
| 2018 |
Huang J, Li J, Zhou J, Wang L, Yang S, Hurst LD, Li WH, Tian D. Identifying a large number of high-yield genes in rice by pedigree analysis, whole-genome sequencing, and CRISPR-Cas9 gene knockout. Proceedings of the National Academy of Sciences of the United States of America. PMID 30037991 DOI: 10.1073/Pnas.1806110115 |
0.573 |
|
| 2017 |
Liu H, Huang J, Sun X, Li J, Hu Y, Yu L, Liti G, Tian D, Hurst LD, Yang S. Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias. Nature Ecology & Evolution. PMID 29158556 DOI: 10.1038/S41559-017-0372-7 |
0.722 |
|
| 2017 |
Yuan Y, Zhang Q, Zeng S, Gu L, Si W, Zhang X, Tian D, Yang S, Wang L. Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars. Bmc Genomics. 18: 307. PMID 28420345 DOI: 10.1186/S12864-017-3702-X |
0.328 |
|
| 2016 |
Liu H, Jia Y, Sun X, Tian D, Hurst LD, Yang S. Direct Determination of the Mutation Rate in the Bumblebee Reveals Evidence for Weak Recombination-Associated Mutation and an Approximate Rate Constancy in Insects. Molecular Biology and Evolution. PMID 28007973 DOI: 10.1093/Molbev/Msw226 |
0.348 |
|
| 2016 |
Guo C, Du J, Wang L, Yang S, Mauricio R, Tian D, Gu T. Insertions/Deletions-Associated Nucleotide Polymorphism in Arabidopsis thaliana. Frontiers in Plant Science. 7: 1792. PMID 27965694 DOI: 10.3389/Fpls.2016.01792 |
0.686 |
|
| 2016 |
Wang L, Zhang Y, Qin C, Tian D, Yang S, Hurst LD. Mutation rate analysis via parent-progeny sequencing of the perennial peach. II. No evidence for recombination-associated mutation. Proceedings. Biological Sciences. 283. PMID 27798307 DOI: 10.1098/Rspb.2016.1785 |
0.347 |
|
| 2016 |
Xie Z, Wang L, Wang L, Wang Z, Lu Z, Tian D, Yang S, Hurst LD. Mutation rate analysis via parent-progeny sequencing of the perennial peach. I. A low rate in woody perennials and a higher mutagenicity in hybrids. Proceedings. Biological Sciences. 283. PMID 27798292 DOI: 10.1098/Rspb.2016.1016 |
0.33 |
|
| 2016 |
Gu L, Wu Y, Jiang M, Si W, Zhang X, Tian D, Yang S. Dissimilar manifestation of heterosis under nutrient-deficient and nutrient-sufficient condition. Plant Physiology. PMID 27540108 DOI: 10.1104/Pp.16.00579 |
0.446 |
|
| 2015 |
Li J, Zhou J, Wu Y, Yang S, Tian D. GC-Content of Synonymous Codons Profoundly Influences Amino Acid Usage. G3 (Bethesda, Md.). PMID 26248983 DOI: 10.1534/G3.115.019877 |
0.327 |
|
| 2015 |
Zhang X, Yang S, Wang J, Jia Y, Huang J, Tan S, Zhong Y, Wang L, Gu L, Chen JQ, Pan Q, Bergelson J, Tian D. A genome-wide survey reveals abundant rice blast R-genes in resistant cultivars. The Plant Journal : For Cell and Molecular Biology. PMID 26248689 DOI: 10.1111/Tpj.12955 |
0.66 |
|
| 2015 |
Yang S, Wang L, Huang J, Zhang X, Yuan Y, Chen JQ, Hurst LD, Tian D. Parent-progeny sequencing indicates higher mutation rates in heterozygotes. Nature. PMID 26176923 DOI: 10.1038/Nature14649 |
0.363 |
|
| 2015 |
Si W, Yuan Y, Huang J, Zhang X, Zhang Y, Zhang Y, Tian D, Wang C, Yang Y, Yang S. Widely distributed hot and cold spots in meiotic recombination as shown by the sequencing of rice F2 plants. The New Phytologist. 206: 1491-502. PMID 25664766 DOI: 10.1111/Nph.13319 |
0.439 |
|
| 2015 |
Liu H, Zhang X, Huang J, Chen JQ, Tian D, Hurst LD, Yang S. Causes and consequences of crossing-over evidenced via a high-resolution recombinational landscape of the honey bee. Genome Biology. 16: 15. PMID 25651211 DOI: 10.1186/S13059-014-0566-0 |
0.347 |
|
| 2014 |
Wang D, Guo C, Huang J, Yang S, Tian D, Zhang X. Allele-mining of rice blast resistance genes at AC134922 locus. Biochemical and Biophysical Research Communications. 446: 1085-90. PMID 24661882 DOI: 10.1016/J.Bbrc.2014.03.056 |
0.542 |
|
| 2014 |
Xia K, Guo H, Hu Z, Xun G, Zuo L, Peng Y, Wang K, He Y, Xiong Z, Sun L, Pan Q, Long Z, Zou X, Li X, Li W, ... ... Tian D, et al. Common genetic variants on 1p13.2 associate with risk of autism. Molecular Psychiatry. 19: 1212-9. PMID 24189344 DOI: 10.1038/mp.2013.146 |
0.325 |
|
| 2013 |
Yang S, Li J, Zhang X, Zhang Q, Huang J, Chen JQ, Hartl DL, Tian D. Rapidly evolving R genes in diverse grass species confer resistance to rice blast disease. Proceedings of the National Academy of Sciences of the United States of America. 110: 18572-7. PMID 24145399 DOI: 10.1073/Pnas.1318211110 |
0.552 |
|
| 2013 |
Zhong Y, Jia Y, Gao Y, Tian D, Yang S, Zhang X. Functional requirements driving the gene duplication in 12 Drosophila species. Bmc Genomics. 14: 555. PMID 23945147 DOI: 10.1186/1471-2164-14-555 |
0.524 |
|
| 2012 |
Wang L, Si W, Yao Y, Tian D, Araki H, Yang S. Genome-wide survey of pseudogenes in 80 fully re-sequenced Arabidopsis thaliana accessions. Plos One. 7: e51769. PMID 23272162 DOI: 10.1371/Journal.Pone.0051769 |
0.512 |
|
| 2012 |
Yang S, Yuan Y, Wang L, Li J, Wang W, Liu H, Chen JQ, Hurst LD, Tian D. Great majority of recombination events in Arabidopsis are gene conversion events. Proceedings of the National Academy of Sciences of the United States of America. 109: 20992-7. PMID 23213238 DOI: 10.1073/Pnas.1211827110 |
0.551 |
|
| 2012 |
Tan S, Zhong Y, Hou H, Yang S, Tian D. Variation of presence/absence genes among Arabidopsis populations. Bmc Evolutionary Biology. 12: 86. PMID 22697058 DOI: 10.1186/1471-2148-12-86 |
0.535 |
|
| 2012 |
Yue JX, Meyers BC, Chen JQ, Tian D, Yang S. Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes. The New Phytologist. 193: 1049-63. PMID 22212278 DOI: 10.1111/J.1469-8137.2011.04006.X |
0.755 |
|
| 2011 |
Tan S, Wang D, Ding J, Tian D, Zhang X, Yang S. Adaptive evolution of Xa21 homologs in Gramineae. Genetica. 139: 1465-75. PMID 22451352 DOI: 10.1007/S10709-012-9645-X |
0.556 |
|
| 2011 |
Zhang X, Wang L, Yuan Y, Tian D, Yang S. Rapid copy number expansion and recent recruitment of domains in S-receptor kinase-like genes contribute to the origin of self-incompatibility. The Febs Journal. 278: 4323-37. PMID 21914128 DOI: 10.1111/J.1742-4658.2011.08349.X |
0.434 |
|
| 2011 |
Liu H, Xing Y, Yang S, Tian D. Remarkable difference of somatic mutation patterns between oncogenes and tumor suppressor genes. Oncology Reports. 26: 1539-46. PMID 21887471 DOI: 10.3892/Or.2011.1443 |
0.408 |
|
| 2011 |
Wu Y, Yuan H, Tan S, Chen JQ, Tian D, Yang H. Increased complexity of gene structure and base composition in vertebrates. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 38: 297-305. PMID 21777854 DOI: 10.1016/J.Jgg.2011.06.004 |
0.504 |
|
| 2011 |
Wang J, Zhang L, Li J, Lawton-Rauh A, Tian D. Unusual signatures of highly adaptable R-loci in closely-related Arabidopsis species. Gene. 482: 24-33. PMID 21664259 DOI: 10.1016/J.Gene.2011.05.012 |
0.54 |
|
| 2011 |
Wang J, Tan S, Zhang L, Li P, Tian D. Co-variation among major classes of LRR-encoding genes in two pairs of plant species. Journal of Molecular Evolution. 72: 498-509. PMID 21626302 DOI: 10.1007/S00239-011-9448-1 |
0.56 |
|
| 2011 |
Zhang X, Feng Y, Cheng H, Tian D, Yang S, Chen JQ. Relative evolutionary rates of NBS-encoding genes revealed by soybean segmental duplication. Molecular Genetics and Genomics : Mgg. 285: 79-90. PMID 21080199 DOI: 10.1007/S00438-010-0587-7 |
0.546 |
|
| 2010 |
Yue JX, Li J, Wang D, Araki H, Tian D, Yang S. Genome-wide investigation reveals high evolutionary rates in annual model plants. Bmc Plant Biology. 10: 242. PMID 21062446 DOI: 10.1186/1471-2229-10-242 |
0.729 |
|
| 2010 |
Yang H, Zhong Y, Peng C, Chen JQ, Tian D. Important role of indels in somatic mutations of human cancer genes. Bmc Medical Genetics. 11: 128. PMID 20807447 DOI: 10.1186/1471-2350-11-128 |
0.391 |
|
| 2010 |
Gu T, Tan S, Gou X, Araki H, Tian D. Avoidance of long mononucleotide repeats in codon pair usage. Genetics. 186: 1077-84. PMID 20805553 DOI: 10.1534/Genetics.110.121137 |
0.422 |
|
| 2010 |
Li J, Ding J, Zhang W, Zhang Y, Tang P, Chen JQ, Tian D, Yang S. Unique evolutionary pattern of numbers of gramineous NBS-LRR genes. Molecular Genetics and Genomics : Mgg. 283: 427-38. PMID 20217430 DOI: 10.1007/S00438-010-0527-6 |
0.557 |
|
| 2010 |
Chen Q, Han Z, Jiang H, Tian D, Yang S. Strong positive selection drives rapid diversification of R-genes in Arabidopsis relatives. Journal of Molecular Evolution. 70: 137-48. PMID 20044783 DOI: 10.1007/S00239-009-9316-4 |
0.553 |
|
| 2010 |
Tang P, Zhang Y, Sun X, Tian D, Yang S, Ding J. Disease resistance signature of the leucine-rich repeat receptor-like kinase genes in four plant species Plant Science. 179: 399-406. DOI: 10.1016/J.Plantsci.2010.06.017 |
0.562 |
|
| 2009 |
Zhu L, Wang Q, Tang P, Araki H, Tian D. Genomewide association between insertions/deletions and the nucleotide diversity in bacteria. Molecular Biology and Evolution. 26: 2353-61. PMID 19587128 DOI: 10.1093/Molbev/Msp144 |
0.455 |
|
| 2009 |
Chen JQ, Wu Y, Yang H, Bergelson J, Kreitman M, Tian D. Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria. Molecular Biology and Evolution. 26: 1523-31. PMID 19329651 DOI: 10.1093/Molbev/Msp063 |
0.605 |
|
| 2009 |
Zhang Y, Wang J, Zhang X, Chen JQ, Tian D, Yang S. Genetic signature of rice domestication shown by a variety of genes. Journal of Molecular Evolution. 68: 393-402. PMID 19290563 DOI: 10.1007/S00239-009-9217-6 |
0.523 |
|
| 2009 |
Zhu L, Zhang Y, Zhang W, Yang S, Chen JQ, Tian D. Patterns of exon-intron architecture variation of genes in eukaryotic genomes. Bmc Genomics. 10: 47. PMID 19166620 DOI: 10.1186/1471-2164-10-47 |
0.531 |
|
| 2009 |
Yang H, Wu Y, Feng J, Yang S, Tian D. Evolutionary pattern of protein architecture in mammal and fruit fly genomes. Genomics. 93: 90-7. PMID 18929639 DOI: 10.1016/J.Ygeno.2008.09.009 |
0.351 |
|
| 2008 |
Du J, Gu T, Tian H, Araki H, Yang YH, Tian D. Grouped nucleotide polymorphism: a major contributor to genetic variation in Arabidopsis. Gene. 426: 1-6. PMID 18835338 DOI: 10.1016/J.Gene.2008.09.003 |
0.419 |
|
| 2008 |
Zhang W, Sun X, Yuan H, Araki H, Wang J, Tian D. The pattern of insertion/deletion polymorphism in Arabidopsis thaliana. Molecular Genetics and Genomics : Mgg. 280: 351-61. PMID 18690477 DOI: 10.1007/S00438-008-0370-1 |
0.42 |
|
| 2008 |
Tian D, Wang Q, Zhang P, Araki H, Yang S, Kreitman M, Nagylaki T, Hudson R, Bergelson J, Chen JQ. Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. Nature. 455: 105-8. PMID 18641631 DOI: 10.1038/Nature07175 |
0.625 |
|
| 2008 |
Sun X, Zhang Y, Yang S, Chen JQ, Hohn B, Tian D. Insertion DNA Promotes Ectopic Recombination during Meiosis in Arabidopsis. Molecular Biology and Evolution. 25: 2079-83. PMID 18641394 DOI: 10.1093/Molbev/Msn158 |
0.354 |
|
| 2008 |
Yang S, Zhang X, Yue JX, Tian D, Chen JQ. Recent duplications dominate NBS-encoding gene expansion in two woody species. Molecular Genetics and Genomics : Mgg. 280: 187-98. PMID 18563445 DOI: 10.1007/S00438-008-0355-0 |
0.752 |
|
| 2008 |
Yang S, Gu T, Pan C, Feng Z, Ding J, Hang Y, Chen JQ, Tian D. Genetic variation of NBS-LRR class resistance genes in rice lines. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 165-77. PMID 17932646 DOI: 10.1007/S00122-007-0656-4 |
0.525 |
|
| 2007 |
Du J, Wang X, Zhang M, Tian D, Yang YH. Unique nucleotide polymorphism of ankyrin gene cluster in Arabidopsis. Journal of Genetics. 86: 27-35. PMID 17656846 DOI: 10.1007/S12041-007-0004-0 |
0.48 |
|
| 2007 |
Ding J, Araki H, Wang Q, Zhang P, Yang S, Chen JQ, Tian D. Highly asymmetric rice genomes. Bmc Genomics. 8: 154. PMID 17555605 DOI: 10.1186/1471-2164-8-154 |
0.447 |
|
| 2007 |
Yang S, Jiang K, Araki H, Ding J, Yang YH, Tian D. A molecular isolation mechanism associated with high intra-specific diversity in rice. Gene. 394: 87-95. PMID 17379459 DOI: 10.1016/J.Gene.2007.02.010 |
0.514 |
|
| 2007 |
Ding J, Zhang W, Jing Z, Chen JQ, Tian D. Unique pattern of R-gene variation within populations in Arabidopsis. Molecular Genetics and Genomics : Mgg. 277: 619-29. PMID 17277944 DOI: 10.1007/S00438-007-0213-5 |
0.445 |
|
| 2007 |
Ding J, Cheng H, Jin X, Araki H, Yang Y, Tian D. Contrasting patterns of evolution between allelic groups at a single locus in Arabidopsis. Genetica. 129: 235-42. PMID 16912841 DOI: 10.1007/S10709-006-0002-9 |
0.518 |
|
| 2007 |
Jiang H, Wang C, Ping L, Tian D, Yang S. Pattern of LRR nucleotide variation in plant resistance genes Plant Science. 173: 253-261. DOI: 10.1016/J.Plantsci.2007.05.010 |
0.505 |
|
| 2006 |
Yang S, Feng Z, Zhang X, Jiang K, Jin X, Hang Y, Chen JQ, Tian D. Genome-wide investigation on the genetic variations of rice disease resistance genes. Plant Molecular Biology. 62: 181-93. PMID 16915523 DOI: 10.1007/S11103-006-9012-3 |
0.54 |
|
| 2006 |
Peng GZ, Chen LL, Tian DC. [Progress in the study of gene duplication]. Yi Chuan = Hereditas / Zhongguo Yi Chuan Xue Hui Bian Ji. 28: 886-92. PMID 16825179 |
0.441 |
|
| 2006 |
Araki H, Tian D, Goss EM, Jakob K, Halldorsdottir SS, Kreitman M, Bergelson J. Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 103: 5887-92. PMID 16581904 DOI: 10.1073/Pnas.0601431103 |
0.718 |
|
| 2006 |
Shen J, Araki H, Chen L, Chen JQ, Tian D. Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana. Genetics. 172: 1243-50. PMID 16452149 DOI: 10.1534/Genetics.105.047290 |
0.435 |
|
| 2004 |
Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D. Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Molecular Genetics and Genomics : Mgg. 271: 402-15. PMID 15014983 DOI: 10.1007/S00438-004-0990-Z |
0.566 |
|
| 2003 |
Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J. Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature. 423: 74-7. PMID 12721627 DOI: 10.1038/Nature01588 |
0.639 |
|
| 2003 |
Mauricio R, Stahl EA, Korves T, Tian D, Kreitman M, Bergelson J. Natural selection for polymorphism in the disease resistance gene Rps2 of Arabidopsis thaliana. Genetics. 163: 735-46. PMID 12618410 |
0.724 |
|
| 2002 |
Tian D, Araki H, Stahl E, Bergelson J, Kreitman M. Signature of balancing selection in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 99: 11525-30. PMID 12172007 DOI: 10.1073/Pnas.172203599 |
0.647 |
|
| 2001 |
Bergelson J, Kreitman M, Stahl EA, Tian D. Evolutionary dynamics of plant R-genes. Science (New York, N.Y.). 292: 2281-5. PMID 11423651 DOI: 10.1126/Science.1061337 |
0.668 |
|
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