| Year |
Citation |
Score |
| 2020 |
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, ... ... Kitano H, et al. SBML Level 3: an extensible format for the exchange and reuse of biological models. Molecular Systems Biology. 16: e9110. PMID 32845085 DOI: 10.15252/Msb.20199110 |
0.324 |
|
| 2020 |
Nock R, Polouliakh N, Nielsen F, Oka K, Connell CR, Heimhofer C, Shibanai K, Ghosh S, Aisaki KI, Kitajima S, Kanno J, Akama T, Kitano H. A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions. Plos One. 15: e0233755. PMID 32628677 DOI: 10.1371/Journal.Pone.0233755 |
0.348 |
|
| 2019 |
Uchida S, Asai Y, Kariya Y, Tsumoto K, Hibino H, Honma M, Abe T, Nin F, Kurata Y, Furutani K, Suzuki H, Kitano H, Inoue R, Kurachi Y. Integrative and theoretical research on the architecture of a biological system and its disorder. The Journal of Physiological Sciences : Jps. PMID 30868372 DOI: 10.1007/S12576-019-00667-8 |
0.338 |
|
| 2017 |
Bajpai A, Ishii T, Miyauchi K, Gupta V, Nishio-Masaike Y, Shimizu-Yoshida Y, Kubo M, Kitano H. Insights into gene expression profiles induced by Socs3 depletion in keratinocytes. Scientific Reports. 7: 15830. PMID 29158586 DOI: 10.1038/S41598-017-16155-1 |
0.703 |
|
| 2016 |
Kawakami E, Nakaoka S, Ohta T, Kitano H. Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data. Nucleic Acids Research. 44: 5010-21. PMID 27131787 DOI: 10.1093/Nar/Gkw355 |
0.324 |
|
| 2015 |
Nim HT, Furtado MB, Costa MW, Rosenthal NA, Kitano H, Boyd SE. VISIONET: intuitive visualisation of overlapping transcription factor networks, with applications in cardiogenic gene discovery. Bmc Bioinformatics. 16: 141. PMID 25929466 DOI: 10.1186/S12859-015-0578-0 |
0.313 |
|
| 2014 |
Asai Y, Abe T, Oka H, Okita M, Hagihara K, Ghosh S, Matsuoka Y, Kurachi Y, Nomura T, Kitano H. A Versatile Platform for Multilevel Modeling of Physiological Systems: SBML-PHML Hybrid Modeling and Simulation Advanced Biomedical Engineering. 3: 50-58. DOI: 10.14326/Abe.3.50 |
0.302 |
|
| 2013 |
Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H. Toward an integrated software platform for systems pharmacology. Biopharmaceutics & Drug Disposition. 34: 508-26. PMID 24150748 DOI: 10.1002/Bdd.1875 |
0.328 |
|
| 2013 |
Schaefer MH, Lopes TJ, Mah N, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Eisfeld AJ, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H, Andrade-Navarro MA. Adding protein context to the human protein-protein interaction network to reveal meaningful interactions. Plos Computational Biology. 9: e1002860. PMID 23300433 DOI: 10.1371/Journal.Pcbi.1002860 |
0.338 |
|
| 2013 |
Makanae K, Kintaka R, Makino T, Kitano H, Moriya H. Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method. Genome Research. 23: 300-11. PMID 23275495 DOI: 10.1101/Gr.146662.112 |
0.307 |
|
| 2012 |
Crespo I, Roomp K, Jurkowski W, Kitano H, del Sol A. Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease. Bmc Systems Biology. 6: 132. PMID 23068602 DOI: 10.1186/1752-0509-6-132 |
0.3 |
|
| 2012 |
Shoemaker JE, Lopes TJ, Ghosh S, Matsuoka Y, Kawaoka Y, Kitano H. CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data. Bmc Genomics. 13: 460. PMID 22953731 DOI: 10.1186/1471-2164-13-460 |
0.318 |
|
| 2012 |
Tiger CF, Krause F, Cedersund G, Palmér R, Klipp E, Hohmann S, Kitano H, Krantz M. A framework for mapping, visualisation and automatic model creation of signal-transduction networks. Molecular Systems Biology. 8: 578. PMID 22531118 DOI: 10.1038/Msb.2012.12 |
0.318 |
|
| 2010 |
Kitano H. Grand challenges in systems physiology. Frontiers in Physiology. 1: 3. PMID 21423346 DOI: 10.3389/Fphys.2010.00003 |
0.318 |
|
| 2010 |
Caron E, Ghosh S, Matsuoka Y, Ashton-Beaucage D, Therrien M, Lemieux S, Perreault C, Roux PP, Kitano H. A comprehensive map of the mTOR signaling network. Molecular Systems Biology. 6: 453. PMID 21179025 DOI: 10.1038/Msb.2010.108 |
0.324 |
|
| 2010 |
Ghosh S, Matsuoka Y, Kitano H. Connecting the dots: role of standardization and technology sharing in biological simulation. Drug Discovery Today. 15: 1024-31. PMID 20934535 DOI: 10.1016/J.Drudis.2010.10.001 |
0.308 |
|
| 2010 |
Kaizu K, Ghosh S, Matsuoka Y, Moriya H, Shimizu-Yoshida Y, Kitano H. A comprehensive molecular interaction map of the budding yeast cell cycle. Molecular Systems Biology. 6: 415. PMID 20865008 DOI: 10.1038/Msb.2010.73 |
0.331 |
|
| 2010 |
Shiraishi T, Matsuyama S, Kitano H. Large-scale analysis of network bistability for human cancers. Plos Computational Biology. 6: e1000851. PMID 20628618 DOI: 10.1371/Journal.Pcbi.1000851 |
0.306 |
|
| 2010 |
Kemper B, Matsuzaki T, Matsuoka Y, Tsuruoka Y, Kitano H, Ananiadou S, Tsujii J. PathText: a text mining integrator for biological pathway visualizations. Bioinformatics (Oxford, England). 26: i374-81. PMID 20529930 DOI: 10.1093/Bioinformatics/Btq221 |
0.332 |
|
| 2010 |
Kaizu K, Moriya H, Kitano H. Fragilities caused by dosage imbalance in regulation of the budding yeast cell cycle. Plos Genetics. 6: e1000919. PMID 20421994 DOI: 10.1371/Journal.Pgen.1000919 |
0.336 |
|
| 2009 |
Hase T, Tanaka H, Suzuki Y, Nakagawa S, Kitano H. Structure of protein interaction networks and their implications on drug design. Plos Computational Biology. 5: e1000550. PMID 19876376 DOI: 10.1371/Journal.Pcbi.1000550 |
0.303 |
|
| 2009 |
Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, ... ... Kitano H, et al. The Systems Biology Graphical Notation. Nature Biotechnology. 27: 735-41. PMID 19668183 DOI: 10.1038/Nbt.1558 |
0.319 |
|
| 2009 |
Matsuoka Y, Ghosh S, Kitano H. Consistent design schematics for biological systems: standardization of representation in biological engineering. Journal of the Royal Society, Interface / the Royal Society. 6: S393-404. PMID 19493898 DOI: 10.1098/Rsif.2009.0046.Focus |
0.319 |
|
| 2009 |
Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, ... ... Kitano H, et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 41: 553-62. PMID 19377474 DOI: 10.1038/Ng.375 |
0.305 |
|
| 2009 |
Polouliakh N, Nock R, Nielsen F, Kitano H. G-protein coupled receptor signaling architecture of mammalian immune cells. Plos One. 4: e4189. PMID 19142232 DOI: 10.1371/Journal.Pone.0004189 |
0.32 |
|
| 2008 |
Novere NL, Moodie S, Sorokin A, Hucka M, Schreiber F, Demir E, Mi H, Matsuoka Y, Wegner K, Kitano H. Systems Biology Graphical Notation: Process Diagram Level 1 Nature Precedings. 1-1. DOI: 10.1038/Npre.2008.2320.1 |
0.342 |
|
| 2007 |
Kitano H. A robustness-based approach to systems-oriented drug design. Nature Reviews. Drug Discovery. 6: 202-10. PMID 17318209 DOI: 10.1038/Nrd2195 |
0.306 |
|
| 2006 |
Moriya H, Shimizu-Yoshida Y, Kitano H. In vivo robustness analysis of cell division cycle genes in Saccharomyces cerevisiae. Plos Genetics. 2: e111. PMID 16839182 DOI: 10.1371/Journal.Pgen.0020111 |
0.339 |
|
| 2006 |
Oda K, Kitano H. A comprehensive map of the toll-like receptor signaling network Molecular Systems Biology. 2. PMID 16738560 DOI: 10.1038/Msb4100057 |
0.302 |
|
| 2006 |
Kitano H, Oda K. Self-Extending Symbiosis: A Mechanism for Increasing Robustness Through Evolution Biological Theory. 1: 61-66. DOI: 10.1162/Biot.2006.1.1.61 |
0.32 |
|
| 2006 |
Kitano H. Computational cellular dynamics: a network–physics integral Nature Reviews Molecular Cell Biology. 7: 163-163. DOI: 10.1038/Nrm1904 |
0.34 |
|
| 2005 |
Kitano H. International alliances for quantitative modeling in systems biology. Molecular Systems Biology. 1: 2005.0007. PMID 16729042 DOI: 10.1038/Msb4100011 |
0.331 |
|
| 2005 |
Kitano H, Funahashi A, Matsuoka Y, Oda K. Using process diagrams for the graphical representation of biological networks. Nature Biotechnology. 23: 961-6. PMID 16082367 DOI: 10.1038/Nbt1111 |
0.303 |
|
| 2004 |
Kyoda K, Baba K, Onami S, Kitano H. DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants. Bioinformatics (Oxford, England). 20: 2662-75. PMID 15166016 DOI: 10.1093/Bioinformatics/Bth306 |
0.316 |
|
| 2003 |
Sauro HM, Hucka M, Finney A, Wellock C, Bolouri H, Doyle J, Kitano H. Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration. Omics : a Journal of Integrative Biology. 7: 355-72. PMID 14683609 DOI: 10.1089/153623103322637670 |
0.326 |
|
| 2003 |
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics (Oxford, England). 19: 524-31. PMID 12611808 DOI: 10.1093/Bioinformatics/Btg015 |
0.492 |
|
| 2003 |
Kitano H. A graphical notation for biochemical networks Biosilico. 1: 169-176. DOI: 10.1016/S1478-5382(03)02380-1 |
0.301 |
|
| 2003 |
Funahashi A, Morohashi M, Kitano H, Tanimura N. CellDesigner: a process diagram editor for gene-regulatory and biochemical networks Biosilico. 1: 159-162. DOI: 10.1016/S1478-5382(03)02370-9 |
0.38 |
|
| 2002 |
Kitano H. Computational systems biology. Nature. 420: 206-10. PMID 12432404 DOI: 10.1038/Nature01254 |
0.313 |
|
| 2002 |
Kitano H. Systems biology: a brief overview. Science (New York, N.Y.). 295: 1662-4. PMID 11872829 DOI: 10.1126/Science.1069492 |
0.316 |
|
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