| Year |
Citation |
Score |
| 2023 |
Mathay M, Keller A, Bruce JE. Studying Protein-Ligand Interactions by Protein Denaturation and Quantitative Cross-Linking Mass Spectrometry. Analytical Chemistry. PMID 37307416 DOI: 10.1021/acs.analchem.2c04501 |
0.341 |
|
| 2022 |
Bartolec TK, Hamey JJ, Keller A, Chavez JD, Bruce JE, Wilkins MR. Differential proteome and interactome analysis reveal the basis of pleiotropy associated with the histidine methyltransferase Hpm1p. Molecular & Cellular Proteomics : McP. 100249. PMID 35609787 DOI: 10.1016/j.mcpro.2022.100249 |
0.339 |
|
| 2022 |
Wippel HH, Chavez JD, Keller AD, Bruce JE. Multiplexed Isobaric Quantitative Cross-Linking Reveals Drug-Induced Interactome Changes in Breast Cancer Cells. Analytical Chemistry. 94: 2713-2722. PMID 35107270 DOI: 10.1021/acs.analchem.1c02208 |
0.369 |
|
| 2021 |
Chavez JD, Keller A, Wippel HH, Mohr JP, Bruce JE. Multiplexed Cross-Linking with Isobaric Quantitative Protein Interaction Reporter Technology. Analytical Chemistry. PMID 34882395 DOI: 10.1021/acs.analchem.1c02209 |
0.37 |
|
| 2021 |
Wippel HH, Chavez JD, Tang X, Bruce JE. Quantitative interactome analysis with chemical cross-linking and mass spectrometry. Current Opinion in Chemical Biology. PMID 34393043 DOI: 10.1016/j.cbpa.2021.06.011 |
0.345 |
|
| 2021 |
Chavez JD, Wippel HH, Tang X, Keller A, Bruce JE. In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology. Chemical Reviews. PMID 34232610 DOI: 10.1021/acs.chemrev.1c00223 |
0.304 |
|
| 2021 |
Tang X, Wippel HH, Chavez JD, Bruce JE. Crosslinking mass spectrometry (XL-MS): a link between structural biology and systems biology. Protein Science : a Publication of the Protein Society. PMID 33594738 DOI: 10.1002/pro.4045 |
0.3 |
|
| 2020 |
Chavez JD, Park SG, Mohr JP, Bruce JE. Applications and advancements of FT-ICR-MS for interactome studies. Mass Spectrometry Reviews. PMID 33289940 DOI: 10.1002/mas.21675 |
0.346 |
|
| 2020 |
Chavez JD, Keller A, Mohr JP, Bruce JE. Isobaric quantitative protein interaction reporter technology for comparative interactome studies. Analytical Chemistry. PMID 32969639 DOI: 10.1021/acs.analchem.0c03128 |
0.366 |
|
| 2020 |
Chavez JD, Tang X, Campbell MD, Reyes G, Kramer PA, Stuppard R, Keller A, Zhang H, Rabinovitch PS, Marcinek DJ, Bruce JE. Mitochondrial protein interaction landscape of SS-31. Proceedings of the National Academy of Sciences of the United States of America. PMID 32554501 DOI: 10.1073/Pnas.2002250117 |
0.33 |
|
| 2020 |
Zhong X, Wu X, Schweppe DK, Chavez JD, Mathay M, Eng JK, Keller A, Bruce JE. In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of β-Lactamase Enzymes. Journal of the American Society For Mass Spectrometry. 31: 190-195. PMID 32031408 DOI: 10.1021/Jasms.9B00021 |
0.657 |
|
| 2020 |
Park SG, Anderson GA, Bruce JE. Parallel detection of fundamental and 6th harmonic signals using an ICR cell with dipole and 6th harmonic detectors. Journal of the American Society For Mass Spectrometry. PMID 31967815 DOI: 10.1021/Jasms.9B00144 |
0.306 |
|
| 2019 |
Chavez JD, Keller A, Zhou B, Tian R, Bruce JE. Cellular Interactome Dynamics during Paclitaxel Treatment. Cell Reports. 29: 2371-2383.e5. PMID 31747606 DOI: 10.1016/J.Celrep.2019.10.063 |
0.399 |
|
| 2019 |
Chavez JD, Mohr JP, Mathay M, Zhong X, Keller A, Bruce JE. Systems structural biology measurements by in vivo cross-linking with mass spectrometry. Nature Protocols. PMID 31270507 DOI: 10.1038/S41596-019-0181-3 |
0.479 |
|
| 2019 |
Keller A, Chavez JD, Felt KC, Bruce JE. Prediction of an Upper Limit for the Fraction of Inter-Protein Cross-Links in Large-scale In Vivo Cross-Linking Studies. Journal of Proteome Research. PMID 31267744 DOI: 10.1021/Acs.Jproteome.9B00189 |
0.421 |
|
| 2019 |
Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, et al. The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. Analytical Chemistry. PMID 31045356 DOI: 10.1021/Acs.Analchem.9B00658 |
0.428 |
|
| 2018 |
Keller A, Chavez JD, Eng JK, Thornton Z, Bruce JE. Tools for 3D Interactome Visualization. Journal of Proteome Research. PMID 30520642 DOI: 10.1021/Acs.Jproteome.8B00703 |
0.405 |
|
| 2018 |
Chavez JD, Bruce JE. Chemical cross-linking with mass spectrometry: a tool for systems structural biology. Current Opinion in Chemical Biology. 48: 8-18. PMID 30172868 DOI: 10.1016/J.Cbpa.2018.08.006 |
0.437 |
|
| 2018 |
Keller A, Chavez JD, Bruce JE. Increased Sensitivity with Automated Validation of XL-MS Cleavable Peptide Crosslinks. Bioinformatics (Oxford, England). PMID 30137231 DOI: 10.1093/Bioinformatics/Bty720 |
0.339 |
|
| 2018 |
Park SG, Anderson GA, Bruce JE. Parallel detection in a single ICR cell: Spectral averaging and improved S/N without increased acquisition time. International Journal of Mass Spectrometry. 427: 29-34. PMID 29731686 DOI: 10.1016/J.Ijms.2017.08.020 |
0.336 |
|
| 2018 |
Park SG, Anderson GA, Bruce JE. Characterization of Harmonic Signal Acquisition with Parallel Dipole and Multipole Detectors. Journal of the American Society For Mass Spectrometry. PMID 29691781 DOI: 10.1007/S13361-018-1954-6 |
0.313 |
|
| 2018 |
Mohr JP, Perumalla P, Chavez JD, Eng JK, Bruce JE. Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification. Analytical Chemistry. PMID 29676898 DOI: 10.1021/Acs.Analchem.7B04991 |
0.441 |
|
| 2018 |
Vreven T, Schweppe DK, Chavez JD, Weisbrod CR, Shibata S, Zheng C, Bruce JE, Weng Z. Integrating cross-linking experiments with ab initio protein-protein docking. Journal of Molecular Biology. PMID 29665372 DOI: 10.1016/J.Jmb.2018.04.010 |
0.796 |
|
| 2017 |
Chavez JD, Lee CF, Caudal A, Keller A, Tian R, Bruce JE. Chemical Crosslinking Mass Spectrometry Analysis of Protein Conformations and Supercomplexes in Heart Tissue. Cell Systems. PMID 29199018 DOI: 10.1016/J.Cels.2017.10.017 |
0.419 |
|
| 2017 |
Nygren PJ, Mehta S, Schweppe DK, Langeberg LK, Whiting JL, Weisbrod CR, Bruce JE, Zhang J, Veesler D, Scott JD. Intrinsic disorder within AKAP79 fine-tunes anchored phosphatase activity toward substrates and drug sensitivity. Elife. 6. PMID 28967377 DOI: 10.7554/Elife.30872 |
0.767 |
|
| 2017 |
Kaufman DM, Wu X, Scott BA, Itani OA, Van Gilst MR, Bruce JE, Michael Crowder C. Ageing and hypoxia cause protein aggregation in mitochondria. Cell Death and Differentiation. PMID 28644434 DOI: 10.1038/Cdd.2017.101 |
0.314 |
|
| 2017 |
Alexander MM, Mohr JP, DeBlasio SL, Chavez JD, Ziegler-Graff V, Brault V, Bruce JE, Cilia M. Insights in luteovirid structural biology guided by chemical cross-linking and high resolution mass spectrometry. Virus Research. PMID 28502641 DOI: 10.1016/J.Virusres.2017.05.005 |
0.374 |
|
| 2017 |
Ramsey JS, Chavez JD, Johnson R, Hosseinzadeh S, Mahoney JE, Mohr JP, Robison F, Zhong X, Hall DG, MacCoss M, Bruce J, Cilia M. Protein interaction networks at the host-microbe interface in Diaphorina citri, the insect vector of the citrus greening pathogen. Royal Society Open Science. 4: 160545. PMID 28386418 DOI: 10.1098/Rsos.160545 |
0.345 |
|
| 2017 |
Erez Z, Sorek R, Shao S, Hegde RS, Schweppe DK, Chavez JD, Bruce JE, Mizrachi E, Verbeke L, Peer YVd, Marchal K, Myburg AA, Bennett JA, Klironomos J, Payne GF, et al. Principles of Systems Biology, No. 14: Sense Codon Reassignment Boosts Protein Chemistries Cell Systems. 4: 143-143. PMID 28231445 DOI: 10.1016/J.Cels.2017.02.004 |
0.667 |
|
| 2017 |
Zhong X, Navare AT, Chavez JD, Eng JK, Schweppe DK, Bruce JE. Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers. Journal of Proteome Research. 16: 720-727. PMID 28152603 DOI: 10.1021/Acs.Jproteome.6B00752 |
0.728 |
|
| 2017 |
Schweppe DK, Chavez JD, Lee CF, Caudal A, Kruse SE, Stuppard R, Marcinek DJ, Shadel GS, Tian R, Bruce JE. Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. PMID 28130547 DOI: 10.1073/Pnas.1617220114 |
0.704 |
|
| 2017 |
Park SG, Anderson GA, Bruce JE. Parallel Spectral Acquisition with Orthogonal ICR Cells. Journal of the American Society For Mass Spectrometry. PMID 28058592 DOI: 10.1007/S13361-016-1573-Z |
0.336 |
|
| 2017 |
Nygren PJ, Mehta S, Schweppe DK, Langeberg LK, Whiting JL, Weisbrod CR, Bruce JE, Zhang J, Veesler D, Scott JD. Author response: Intrinsic disorder within AKAP79 fine-tunes anchored phosphatase activity toward substrates and drug sensitivity Elife. DOI: 10.7554/Elife.30872.022 |
0.743 |
|
| 2016 |
Chavez JD, Eng JK, Schweppe DK, Cilia M, Rivera K, Zhong X, Wu X, Allen T, Khurgel M, Kumar A, Lampropoulos A, Larsson M, Maity S, Morozov Y, Pathmasiri W, ... ... Bruce JE, et al. A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry. Plos One. 11: e0167547. PMID 27997545 DOI: 10.1371/Journal.Pone.0167547 |
0.734 |
|
| 2016 |
Wu X, Chavez JD, Schweppe DK, Zheng C, Weisbrod CR, Eng JK, Murali A, Lee SA, Ramage E, Gallagher LA, Kulasekara HD, Edrozo ME, Kamischke CN, Brittnacher MJ, Miller SI, ... ... Bruce JE, et al. In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075. Nature Communications. 7: 13414. PMID 27834373 DOI: 10.1038/Ncomms13414 |
0.782 |
|
| 2016 |
Chavez JD, Schweppe DK, Eng JK, Bruce JE. In Vivo Conformational Dynamics of Hsp90 and Its Interactors. Cell Chemical Biology. 23: 716-26. PMID 27341434 DOI: 10.1016/J.Chembiol.2016.05.012 |
0.69 |
|
| 2016 |
Schweppe DK, Zheng C, Chavez JD, Navare AT, Wu X, Eng JK, Bruce JE. XLinkDB 2.0: Integrated, large-scale structural analysis of protein crosslinking data. Bioinformatics (Oxford, England). PMID 27153666 DOI: 10.1093/Bioinformatics/Btw232 |
0.725 |
|
| 2016 |
Schweppe DK, Chavez JD, Navare AT, Wu X, Ruiz B, Eng JK, Lam H, Bruce JE. Spectral library searching to identify crosslinked peptides. Journal of Proteome Research. PMID 27089058 DOI: 10.1021/Acs.Jproteome.6B00014 |
0.72 |
|
| 2015 |
Park SG, Anderson GA, Navare AT, Bruce JE. Parallel Spectral Acquisition with an ICR Cell Array. Analytical Chemistry. PMID 26669509 DOI: 10.1021/Acs.Analchem.5B02987 |
0.395 |
|
| 2015 |
DeBlasio SL, Chavez JD, Alexander MM, Ramsey J, Eng JK, Mahoney J, Gray SM, Bruce JE, Cilia M. Visualization of host-polerovirus interaction topologies using Protein Interaction Reporter technology. Journal of Virology. PMID 26656710 DOI: 10.1128/Jvi.01706-15 |
0.392 |
|
| 2015 |
Schweppe DK, Harding C, Chavez JD, Wu X, Ramage E, Singh PK, Manoil C, Bruce JE. Host-Microbe Protein Interactions during Bacterial Infection. Chemistry & Biology. PMID 26548613 DOI: 10.1016/J.Chembiol.2015.09.015 |
0.703 |
|
| 2015 |
Schweppe DK, Chavez JD, Bruce JE. XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking. Bioinformatics (Oxford, England). PMID 26411867 DOI: 10.1093/Bioinformatics/Btv519 |
0.718 |
|
| 2015 |
Chavez JD, Schweppe DK, Eng JK, Zheng C, Taipale A, Zhang Y, Takara K, Bruce JE. Quantitative interactome analysis reveals a chemoresistant edgotype. Nature Communications. 6: 7928. PMID 26235782 DOI: 10.1038/Ncomms8928 |
0.72 |
|
| 2015 |
Wu X, Held K, Zheng C, Staudinger BJ, Chavez JD, Weisbrod CR, Eng JK, Singh PK, Manoil C, Bruce JE. Dynamic Proteome Response of Pseudomonas aeruginosa to Tobramycin Antibiotic Treatment. Molecular & Cellular Proteomics : McP. 14: 2126-37. PMID 26018413 DOI: 10.1074/Mcp.M115.050161 |
0.683 |
|
| 2015 |
Navare AT, Chavez JD, Zheng C, Weisbrod CR, Eng JK, Siehnel R, Singh PK, Manoil C, Bruce JE. Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry. Structure (London, England : 1993). 23: 762-73. PMID 25800553 DOI: 10.1016/J.Str.2015.01.022 |
0.732 |
|
| 2014 |
Cilia M, Johnson R, Sweeney M, DeBlasio SL, Bruce JE, MacCoss MJ, Gray SM. Evidence for lysine acetylation in the coat protein of a polerovirus Journal of General Virology. 95: 2321-2329. PMID 24939649 DOI: 10.1099/Vir.0.066514-0 |
0.769 |
|
| 2014 |
Chowdhury SM, Munske GR, Yang J, Zhukova D, Nguyen H, Bruce JE. Solid-phase N-terminal peptide enrichment study by optimizing trypsin proteolysis on homoarginine-modified proteins by mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 28: 635-44. PMID 24519826 DOI: 10.1002/Rcm.6820 |
0.723 |
|
| 2013 |
Winger BE, Hofstadler SA, Bruce JE, Udseth HR, Smith RD. High-resolution accurate mass measurements of biomolecules using a new electrospray ionization ion cyclotron resonance mass spectrometer. Journal of the American Society For Mass Spectrometry. 4: 566-77. PMID 24227643 DOI: 10.1016/1044-0305(93)85018-S |
0.439 |
|
| 2013 |
Hofstadler SA, Wahl JH, Bakhtiar R, Anderson GA, Bruce JE, Smith RD. Capillary electrophoresis fourier transform ion cyclotron resonance mass spectrometry with sustained off-resonance irradiation for the characterization of protein and peptide mixtures. Journal of the American Society For Mass Spectrometry. 5: 894-9. PMID 24226235 DOI: 10.1016/1044-0305(94)87014-4 |
0.329 |
|
| 2013 |
Weisbrod CR, Hoopmann MR, Senko MW, Bruce JE. Performance evaluation of a dual linear ion trap-Fourier transform ion cyclotron resonance mass spectrometer for proteomics research. Journal of Proteomics. 88: 109-19. PMID 23590889 DOI: 10.1016/J.Jprot.2013.04.009 |
0.727 |
|
| 2013 |
Weisbrod CR, Chavez JD, Eng JK, Yang L, Zheng C, Bruce JE. In vivo protein interaction network identified with a novel real-time cross-linked peptide identification strategy. Journal of Proteome Research. 12: 1569-79. PMID 23413883 DOI: 10.1021/Pr3011638 |
0.733 |
|
| 2013 |
Zheng C, Weisbrod CR, Chavez JD, Eng JK, Sharma V, Wu X, Bruce JE. XLink-DB: Database and software tools for storing and visualizing protein interaction topology data Journal of Proteome Research. 12: 1989-1995. PMID 23413830 DOI: 10.1021/Pr301162J |
0.683 |
|
| 2013 |
Chavez JD, Weisbrod CR, Zheng C, Eng JK, Bruce JE. Protein interactions, post-translational modifications and topologies in human cells. Molecular & Cellular Proteomics : McP. 12: 1451-67. PMID 23354917 DOI: 10.1074/Mcp.M112.024497 |
0.735 |
|
| 2012 |
Bruce JE. In vivo protein complex topologies: sights through a cross-linking lens. Proteomics. 12: 1565-75. PMID 22610688 DOI: 10.1002/Pmic.201100516 |
0.42 |
|
| 2012 |
Chavez JD, Cilia M, Weisbrod CR, Ju HJ, Eng JK, Gray SM, Bruce JE. Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions. Journal of Proteome Research. 11: 2968-81. PMID 22390342 DOI: 10.1021/Pr300041T |
0.693 |
|
| 2012 |
Weisbrod CR, Eng JK, Hoopmann MR, Baker T, Bruce JE. Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification. Journal of Proteome Research. 11: 1621-32. PMID 22288382 DOI: 10.1021/Pr2008175 |
0.714 |
|
| 2012 |
Yang L, Zheng C, Weisbrod CR, Tang X, Munske GR, Hoopmann MR, Eng JK, Bruce JE. In vivo application of photocleavable protein interaction reporter technology. Journal of Proteome Research. 11: 1027-41. PMID 22168182 DOI: 10.1021/Pr200775J |
0.739 |
|
| 2012 |
Gold MG, Reichow SL, O'Neill SE, Weisbrod CR, Langeberg LK, Bruce JE, Gonen T, Scott JD. AKAP2 anchors PKA with aquaporin-0 to support ocular lens transparency. Embo Molecular Medicine. 4: 15-26. PMID 22095752 DOI: 10.1002/Emmm.201100184 |
0.66 |
|
| 2012 |
Bruce JE, Anderson GA, Udseth HR, Smith RD. Large Molecule Characterization Based upon Individual Ion Detection with Electrospray Ionization-FTICR Mass Spectrometry. Analytical Chemistry. 70: 519-25. PMID 21644751 DOI: 10.1021/Ac9711706 |
0.397 |
|
| 2011 |
Hoopmann MR, Chavez JD, Bruce JE. SILACtor: software to enable dynamic SILAC studies. Analytical Chemistry. 83: 8403-10. PMID 21954881 DOI: 10.1021/Ac2017053 |
0.397 |
|
| 2011 |
Yang L, Vaitheesvaran B, Hartil K, Robinson AJ, Hoopmann MR, Eng JK, Kurland IJ, Bruce JE. The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching. Journal of Proteome Research. 10: 4134-49. PMID 21728379 DOI: 10.1021/Pr200313X |
0.319 |
|
| 2011 |
Zheng C, Yang L, Hoopmann MR, Eng JK, Tang X, Weisbrod CR, Bruce JE. Cross-linking measurements of in vivo protein complex topologies. Molecular & Cellular Proteomics : McP. 10: M110.006841. PMID 21697552 DOI: 10.1074/Mcp.M110.006841 |
0.73 |
|
| 2011 |
Chavez JD, Hoopmann MR, Weisbrod CR, Takara K, Bruce JE. Quantitative proteomic and interaction network analysis of cisplatin resistance in HeLa cells. Plos One. 6: e19892. PMID 21637840 DOI: 10.1371/Journal.Pone.0019892 |
0.696 |
|
| 2011 |
Gold MG, Stengel F, Nygren PJ, Weisbrod CR, Bruce JE, Robinson CV, Barford D, Scott JD. Architecture and dynamics of an A-kinase anchoring protein 79 (AKAP79) signaling complex. Proceedings of the National Academy of Sciences of the United States of America. 108: 6426-31. PMID 21464287 DOI: 10.1073/Pnas.1014400108 |
0.699 |
|
| 2011 |
Chavez JD, Liu NL, Bruce JE. Quantification of protein-protein interactions with chemical cross-linking and mass spectrometry. Journal of Proteome Research. 10: 1528-37. PMID 21222489 DOI: 10.1021/Pr100898E |
0.453 |
|
| 2010 |
Hoopmann MR, Weisbrod CR, Bruce JE. Improved strategies for rapid identification of chemically cross-linked peptides using protein interaction reporter technology. Journal of Proteome Research. 9: 6323-33. PMID 20886857 DOI: 10.1021/Pr100572U |
0.743 |
|
| 2010 |
Weisbrod CR, Kaiser NK, Skulason GE, Bruce JE. Excite-coupled trapping ring electrode cell (eTREC): radial trapping field control, linearized excitation, and improved detection. Analytical Chemistry. 82: 6281-6. PMID 20575529 DOI: 10.1021/Ac100461C |
0.764 |
|
| 2010 |
Tang X, Bruce JE. A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies. Molecular Biosystems. 6: 939-47. PMID 20485738 DOI: 10.1039/B920876C |
0.448 |
|
| 2010 |
Yang L, Tang X, Weisbrod CR, Munske GR, Eng JK, Von Haller PD, Kaiser NK, Bruce JE. A photocleavable and mass spectrometry identifiable cross-linker for protein interaction studies Analytical Chemistry. 82: 3556-3566. PMID 20373789 DOI: 10.1021/Ac902615G |
0.807 |
|
| 2009 |
Yang L, Zhang H, Bruce JE. Optimizing the detergent concentration conditions for immunoprecipitation (IP) coupled with LC-MS/MS identification of interacting proteins. The Analyst. 134: 755-62. PMID 19305927 DOI: 10.1039/B813335B |
0.388 |
|
| 2009 |
Tang X, Bruce JE. Chemical cross-linking for protein-protein interaction studies. Methods in Molecular Biology (Clifton, N.J.). 492: 283-93. PMID 19241040 DOI: 10.1007/978-1-59745-493-3_17 |
0.457 |
|
| 2009 |
Kaiser NK, Skulason GE, Weisbrod CR, Bruce JE. A novel Fourier transform ion cyclotron resonance mass spectrometer with improved ion trapping and detection capabilities. Journal of the American Society For Mass Spectrometry. 20: 755-62. PMID 19200753 DOI: 10.1016/J.Jasms.2008.12.022 |
0.785 |
|
| 2009 |
Zhang H, Tang X, Munske GR, Tolic N, Anderson GA, Bruce JE. Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry. Molecular & Cellular Proteomics : McP. 8: 409-20. PMID 18936057 DOI: 10.1074/Mcp.M800232-Mcp200 |
0.467 |
|
| 2008 |
Weisbrod CR, Kaiser NK, Skulason GE, Bruce JE. Trapping ring electrode cell: a FTICR mass spectrometer cell for improved signal-to-noise and resolving power. Analytical Chemistry. 80: 6545-53. PMID 18681460 DOI: 10.1021/Ac800535E |
0.768 |
|
| 2008 |
Kaiser NK, Skulason GE, Weisbrod CR, Wu S, Zhang K, Prior DC, Buschbach MA, Anderson GA, Bruce JE. Restrained ion population transfer: a novel ion transfer method for mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 22: 1955-64. PMID 18489013 DOI: 10.1002/Rcm.3574 |
0.789 |
|
| 2008 |
Zhang H, Tang X, Munske GR, Zakharova N, Yang L, Zheng C, Wolff MA, Tolic N, Anderson GA, Shi L, Marshall MJ, Fredrickson JK, Bruce JE. In vivo identification of the outer membrane protein OmcA-MtrC interaction network in Shewanella oneidensis MR-1 cells using novel hydrophobic chemical cross-linkers. Journal of Proteome Research. 7: 1712-20. PMID 18303833 DOI: 10.1021/Pr7007658 |
0.408 |
|
| 2008 |
Kaiser NK, Weisbrod CR, Webb BN, Bruce JE. Reduction of axial kinetic energy induced perturbations on observed cyclotron frequency. Journal of the American Society For Mass Spectrometry. 19: 467-78. PMID 18262433 DOI: 10.1016/J.Jasms.2007.12.009 |
0.778 |
|
| 2007 |
Anderson GA, Tolic N, Tang X, Zheng C, Bruce JE. Informatics strategies for large-scale novel cross-linking analysis. Journal of Proteome Research. 6: 3412-21. PMID 17676784 DOI: 10.1021/Pr070035Z |
0.444 |
|
| 2007 |
Tang X, Bruce JE, Hill HH. Design and performance of an atmospheric pressure ion mobility Fourier transform ion cyclotron resonance mass spectrometer. Rapid Communications in Mass Spectrometry : Rcm. 21: 1115-22. PMID 17318922 DOI: 10.1002/Rcm.2928 |
0.416 |
|
| 2007 |
Tang X, Yi W, Munske GR, Adhikari DP, Zakharova NL, Bruce JE. Profiling the membrane proteome of Shewanella oneidensis MR-1 with new affinity labeling probes. Journal of Proteome Research. 6: 724-34. PMID 17269728 DOI: 10.1021/Pr060480E |
0.32 |
|
| 2007 |
Zhang K, Wu S, Tang X, Kaiser NK, Bruce JE. A bifunctional monolithic column for combined protein preconcentration and digestion for high throughput proteomics research. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 849: 223-30. PMID 17150420 DOI: 10.1016/J.Jchromb.2006.11.029 |
0.755 |
|
| 2007 |
Chowdhury SM, Munske GR, Ronald RC, Bruce JE. Evaluation of low energy CID and ECD fragmentation behavior of mono-oxidized thio-ether bonds in peptides. Journal of the American Society For Mass Spectrometry. 18: 493-501. PMID 17126025 DOI: 10.1016/J.Jasms.2006.10.019 |
0.708 |
|
| 2007 |
Kaiser NK, Bruce JE. Reduction of ion magnetron motion and space charge using radial electric field modulation International Journal of Mass Spectrometry. 265: 271-280. DOI: 10.1016/J.Ijms.2007.02.040 |
0.73 |
|
| 2006 |
Chowdhury SM, Munske GR, Tang X, Bruce JE. Collisionally activated dissociation and electron capture dissociation of several mass spectrometry-identifiable chemical cross-linkers. Analytical Chemistry. 78: 8183-93. PMID 17165806 DOI: 10.1021/Ac060789H |
0.77 |
|
| 2006 |
Tang X, Bruce JE, Hill HH. Characterizing electrospray ionization using atmospheric pressure ion mobility spectrometry. Analytical Chemistry. 78: 7751-60. PMID 17105168 DOI: 10.1021/Ac0613380 |
0.354 |
|
| 2006 |
Wu S, Zhang K, Kaiser NK, Bruce JE, Prior DC, Anderson GA. Incorporation of a flared inlet capillary tube on a fourier transform ion cyclotron resonance mass spectrometer. Journal of the American Society For Mass Spectrometry. 17: 772-9. PMID 16603374 DOI: 10.1016/J.Jasms.2006.02.011 |
0.724 |
|
| 2005 |
Kaiser NK, Bruce JE. Observation of increased ion cyclotron resonance signal duration through electric field perturbations. Analytical Chemistry. 77: 5973-81. PMID 16159130 DOI: 10.1021/Ac050606B |
0.732 |
|
| 2005 |
Wu S, Kaiser NK, Meng D, Anderson GA, Zhang K, Bruce JE. Increased protein identification capabilities through novel tandem MS calibration strategies. Journal of Proteome Research. 4: 1434-41. PMID 16083297 DOI: 10.1021/Pr0501057 |
0.756 |
|
| 2005 |
Wu S, Tang XT, Siems WF, Bruce JE. A hybrid LC-Gel-MS method for proteomics research and its application to protease functional pathway mapping. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 822: 98-111. PMID 15994140 DOI: 10.1016/J.Jchromb.2005.05.043 |
0.395 |
|
| 2005 |
Kaiser NK, Anderson GA, Bruce JE. Improved mass accuracy for tandem mass spectrometry. Journal of the American Society For Mass Spectrometry. 16: 463-70. PMID 15792715 DOI: 10.1016/J.Jasms.2004.12.005 |
0.747 |
|
| 2005 |
Chowdhury SM, Munske GR, Siems WF, Bruce JE. A new maleimide-bound acid-cleavable solid-support reagent for profiling phosphorylation. Rapid Communications in Mass Spectrometry : Rcm. 19: 899-909. PMID 15739244 DOI: 10.1002/Rcm.1869 |
0.712 |
|
| 2005 |
Tang X, Munske GR, Siems WF, Bruce JE. Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions. Analytical Chemistry. 77: 311-8. PMID 15623310 DOI: 10.1021/Ac0488762 |
0.434 |
|
| 2004 |
Edberg DD, Bruce JE, Siems WF, Reeves R. In vivo posttranslational modifications of the high mobility group A1a proteins in breast cancer cells of differing metastatic potential. Biochemistry. 43: 11500-15. PMID 15350136 DOI: 10.1021/Bi049833I |
0.452 |
|
| 2001 |
Iakoucheva LM, Kimzey AL, Masselon CD, Bruce JE, Garner EC, Brown CJ, Dunker AK, Smith RD, Ackerman EJ. Identification of intrinsic order and disorder in the DNA repair protein XPA. Protein Science : a Publication of the Protein Society. 10: 560-71. PMID 11344324 DOI: 10.1110/Ps.29401 |
0.384 |
|
| 2000 |
Bruce JE, Anderson GA, Brands MD, Pasa-Tolic L, Smith RD. Obtaining more accurate Fourier transform ion cyclotron resonance mass measurements without internal standards using multiply charged ions. Journal of the American Society For Mass Spectrometry. 11: 416-21. PMID 10790845 DOI: 10.1016/S1044-0305(00)00096-9 |
0.385 |
|
| 2000 |
Masselon C, Anderson GA, Harkewicz R, Bruce JE, Pasa-Tolic L, Smith RD. Accurate mass multiplexed tandem mass spectrometry for high-throughput polypeptide identification from mixtures. Analytical Chemistry. 72: 1918-24. PMID 10784162 DOI: 10.1021/Ac991133+ |
0.418 |
|
| 2000 |
Goodlett DR, Bruce JE, Anderson GA, Rist B, Pasa-Tolic L, Fiehn O, Smith RD, Aebersold R. Protein identification with a single accurate mass of a cysteine- containing peptide and constrained database searching Analytical Chemistry. 72: 1112-1118. PMID 10740847 DOI: 10.1021/Ac9913210 |
0.435 |
|
| 2000 |
Bruce JE, Anderson GA, Lin CY, Gorshkov M, Rockwood AL, Smith RD. A novel high-performance fourier transform ion cyclotron resonance cell for improved biopolymer characterization. Journal of Mass Spectrometry : Jms. 35: 85-94. PMID 10633238 DOI: 10.1002/(Sici)1096-9888(200001)35:1<85::Aid-Jms910>3.0.Co;2-7 |
0.342 |
|
| 2000 |
Gao H, Shen Y, Veenstra TD, Harkewicz R, Anderson GA, Bruce JE, Pasa-Tolic L, Smith RD. Two-dimensional electrophoretic/chromatographic separations combined with electrospray ionization FTICR mass spectrometry for high throughput proteome analysis Journal of Microcolumn Separations. 12: 383-390. DOI: 10.1002/1520-667X(2000)12:7<383::Aid-Mcs1>3.0.Co;2-S |
0.465 |
|
| 1999 |
Bruce JE, Anderson GA, Wen J, Harkewicz R, Smith RD. High-mass-measurement accuracy and 100% sequence coverage of enzymatically digested bovine serum albumin from an ESI-FTICR mass spectrum. Analytical Chemistry. 71: 2595-9. PMID 10424157 DOI: 10.1021/Ac990231S |
0.405 |
|
| 1999 |
Jensen PK, Pasa-Tolić L, Anderson GA, Horner JA, Lipton MS, Bruce JE, Smith RD. Probing proteomes using capillary isoelectric focusing-electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 71: 2076-84. PMID 10366890 DOI: 10.1021/Ac990196P |
0.448 |
|
| 1999 |
Paša-Tolić L, Jensen PK, Anderson GA, Lipton MS, Peden KK, Martinović S, Tolić N, Bruce JE, Smith RD. High Throughput Proteome-Wide Precision Measurements of Protein Expression Using Mass Spectrometry Journal of the American Chemical Society. 121: 7949-7950. DOI: 10.1021/Ja991063O |
0.389 |
|
| 1998 |
Gorshkov MV, Pása Tolić L, Udseth HR, Anderson GA, Huang BM, Bruce JE, Prior DC, Hofstadler SA, Tang L, Chen LZ, Willett JA, Rockwood AL, Sherman MS, Smith RD. Electrospray ionization-Fourier transform ion cyclotron resonance mass spectrometry at 11.5 tesla: instrument design and initial results. Journal of the American Society For Mass Spectrometry. 9: 692-700. PMID 9879379 DOI: 10.1016/S1044-0305(98)00037-3 |
0.395 |
|
| 1998 |
Randall LL, Hardy SJ, Topping TB, Smith VF, Bruce JE, Smith RD. The interaction between the chaperone SecB and its ligands: evidence for multiple subsites for binding. Protein Science : a Publication of the Protein Society. 7: 2384-90. PMID 9828004 DOI: 10.1002/Pro.5560071115 |
0.375 |
|
| 1998 |
Bruce JE, Smith VF, Liu C, Randall LL, Smith RD. The observation of chaperone-ligand noncovalent complexes with electrospray ionization mass spectrometry. Protein Science : a Publication of the Protein Society. 7: 1180-5. PMID 9605322 DOI: 10.1002/Pro.5560070512 |
0.408 |
|
| 1998 |
Tolić LP, Bruce JE, Lei QP, Anderson GA, Smith RD. In-trap cleanup of proteins from electrospray ionization using soft sustained off-resonance irradiation with fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 70: 405-8. PMID 9450366 DOI: 10.1021/Ac970828C |
0.432 |
|
| 1998 |
Bresson JA, Anderson GA, Bruce JE, Smith RD. Improved isotopic abundance measurements for high resolution fourier transform ion cyclotron resonance mass spectra via time-domain data extraction Journal of the American Society For Mass Spectrometry. 9: 799-804. DOI: 10.1016/S1044-0305(98)00047-6 |
0.407 |
|
| 1997 |
Gorshkov MV, Pasa-Tolić L, Bruce JE, Anderson GA, Smith RD. A dual-trap design and its applications in electrospray ionization FTICR mass spectrometry. Analytical Chemistry. 69: 1307-14. PMID 9105175 DOI: 10.1021/Ac960941N |
0.378 |
|
| 1997 |
Smith RD, Bruce JE, Wu Q, Lei QP. New mass spectrometric methods for the study of noncovalent associations of biopolymers Chemical Society Reviews. 26: 191. DOI: 10.1039/Cs9972600191 |
0.345 |
|
| 1996 |
Bruce JE, Anderson GA, Smith RD. "Colored" noise waveforms and quadrupole excitation for the dynamic range expansion of Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 68: 534-41. PMID 8712362 DOI: 10.1021/Ac950823K |
0.376 |
|
| 1996 |
Cheng X, Camp DG, Wu Q, Bakhtiar R, Springer DL, Morris BJ, Bruce JE, Anderson GA, Edmonds CG, Smith RD. Molecular weight determination of plasmid DNA using electrospray ionization mass spectrometry. Nucleic Acids Research. 24: 2183-9. PMID 8668552 DOI: 10.1093/Nar/24.11.2183 |
0.36 |
|
| 1996 |
Cheng X, Morin PE, Harms AC, Bruce JE, Ben-David Y, Smith RD. Mass spectrometric characterization of sequence-specific complexes of DNA and transcription factor PU.1 DNA binding domain. Analytical Biochemistry. 239: 35-40. PMID 8660622 DOI: 10.1006/Abio.1996.0287 |
0.344 |
|
| 1996 |
Gao J, Cheng X, Chen R, Sigal GB, Bruce JE, Schwartz BL, Hofstadler SA, Anderson GA, Smith RD, Whitesides GM. Screening derivatized peptide libraries for tight binding inhibitors to carbonic anhydrase II by electrospray ionization-mass spectrometry. Journal of Medicinal Chemistry. 39: 1949-55. PMID 8642553 DOI: 10.1021/Jm960013G |
0.313 |
|
| 1996 |
Wunschel DS, Fox KF, Fox A, Bruce JE, Muddiman DC, Smith RD. Analysis of double-stranded polymerase chain reaction products from the Bacillus cereus group by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 10: 29-35. PMID 8563015 DOI: 10.1002/(Sici)1097-0231(19960115)10:1<29::Aid-Rcm430>3.0.Co;2-# |
0.37 |
|
| 1996 |
Cheng X, Hofstadler SA, Bruce JE, Harms AC, Chen R, Smith RD, Terwilliger TC, Goudreau PN. Electrospray ionization with high performance fourier transform ion cyclotron resonance mass spectrometry for the study of noncovalent biomolecular complexes Techniques in Protein Chemistry. 7: 13-22. DOI: 10.1016/S1080-8914(96)80005-6 |
0.444 |
|
| 1995 |
Schwartz BL, Bruce JE, Anderson GA, Hofstadler SA, Rockwood AL, Smith RD, Chilkoti A, Stayton PS. Dissociation of tetrameric ions of noncovalent streptavidin complexes formed by electrospray ionization. Journal of the American Society For Mass Spectrometry. 6: 459-65. PMID 24214298 DOI: 10.1016/1044-0305(95)00191-F |
0.417 |
|
| 1995 |
Bruce JE, Anderson GA, Chen R, Cheng X, Gale DC, Hofstadler SA, Schwartz BL, Smith RD. Bio-affinity characterization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 9: 644-50. PMID 7647362 DOI: 10.1002/Rcm.1290090805 |
0.389 |
|
| 1995 |
Cheng X, Chen R, Bruce JE, Schwartz BL, Anderson GA, Hofstadler SA, Gale DC, Smith RD, Gao J, Sigal GB, Mammen M, Whitesides GM. Using Electrospray Ionization FTICR Mass Spectrometry To Study Competitive Binding of Inhibitors to Carbonic Anhydrase Journal of the American Chemical Society. 117: 8859-8860. DOI: 10.1021/Ja00139A023 |
0.366 |
|
| 1995 |
Hofstadler SA, Wu Q, Bruce JE, Chen R, Smith RD. Enhanced accumulated trapping efficiency using an auxiliary trapping electrode in an external source Fourier transform ion cyclotron resonance mass spectrometer International Journal of Mass Spectrometry and Ion Processes. 142: 143-150. DOI: 10.1016/0168-1176(95)04141-7 |
0.36 |
|
| 1995 |
Bruce JE, Van Orden SL, Anderson GA, Hofstadler SA, Sherman MG, Rockwood AL, Smith RD. Selected ion accumulation of noncovalent complexes in a Fourier transform ion cyclotron resonance mass spectrometer Journal of Mass Spectrometry. 30: 124-133. DOI: 10.1002/Jms.1190300119 |
0.391 |
|
| 1994 |
Bruce JE, Cheng X, Bakhtiar R, Wu Q, Hofstadler SA, Anderson GA, Smith RD. Trapping, Detection, and Mass Measurement of Individual Ions in a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer Journal of the American Chemical Society. 116: 7839-7847. DOI: 10.1021/Ja00096A046 |
0.391 |
|
| 1994 |
Hofstadler SA, Bruce JE, Rockwood AL, Anderson GA, Winger BE, Smith RD. Isotopic beat patterns in Fourier transform ion cyclotron resonance mass spectrometry: implications for high resolution mass measurements of large biopolymers International Journal of Mass Spectrometry and Ion Processes. 132: 109-127. DOI: 10.1016/0168-1176(94)85020-8 |
0.375 |
|
| 1994 |
Bruce JE, Hofstadler SA, Winger BE, Smith RD. Characterization of ribonuclease B heterogeneity and the identification and removal of phosphate adducts by high resolution electrospray ionization Fourier transform ion clylotron resonance mass spectrometry International Journal of Mass Spectrometry and Ion Processes. 132: 97-107. DOI: 10.1016/0168-1176(93)03936-G |
0.404 |
|
| 1993 |
Hofstadler SA, Wahl JH, Bruce JE, Smith RD. On-line capillary electrophoresis with Fourier transform ion cyclotron resonance mass spectrometry Journal of the American Chemical Society. 115: 6983-6984. DOI: 10.1021/Ja00068A070 |
0.392 |
|
| 1993 |
Bruce JE, Anderson GA, Hofstadler SA, van Orden SL, Sherman MS, Rockwood AL, Smith RD. Selected-ion accumulation from an external electrospray ionization source with a fourier-transform ion cyclotron resonance mass spectrometer Rapid Communications in Mass Spectrometry. 7: 914-919. DOI: 10.1002/Rcm.1290071012 |
0.389 |
|
| 1993 |
Bruce JE, Anderson GA, Hofstadler SA, Winger BE, Smith RD. Time-base modulation for the correction of cyclotron frequency shifts observed in long-lived transients from fourier-transform ion-cyclotron-resonance mass spectrometry of electrosprayed biopolymers Rapid Communications in Mass Spectrometry. 7: 700-703. DOI: 10.1002/Rcm.1290070803 |
0.383 |
|
| 1992 |
Bruce JE, Eyler JR. Probing trapped ion energies via ion-molecule reaction kinetics: Fourier transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 3: 727-33. PMID 24234639 DOI: 10.1016/1044-0305(92)87085-D |
0.537 |
|
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