| Year |
Citation |
Score |
| 2023 |
Hou L, Xiong X, Park Y, Boix C, James B, Sun N, He L, Patel A, Zhang Z, Molinie B, Van Wittenberghe N, Steelman S, Nusbaum C, Aguet F, Ardlie KG, et al. Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease. Nature Genetics. PMID 37770633 DOI: 10.1038/s41588-023-01509-5 |
0.762 |
|
| 2021 |
Cao J, Novoa EM, Zhang Z, Chen WCW, Liu D, Choi GCG, Wong ASL, Wehrspaun C, Kellis M, Lu TK. High-throughput 5' UTR engineering for enhanced protein production in non-viral gene therapies. Nature Communications. 12: 4138. PMID 34230498 DOI: 10.1038/s41467-021-24436-7 |
0.695 |
|
| 2019 |
Liu D, Davila-Velderrain J, Zhang Z, Kellis M. Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization. Nucleic Acids Research. PMID 31265076 DOI: 10.1093/Nar/Gkz538 |
0.748 |
|
| 2019 |
Wu MR, Nissim L, Stupp D, Pery E, Binder-Nissim A, Weisinger K, Enghuus C, Palacios SR, Humphrey M, Zhang Z, Maria Novoa E, Kellis M, Weiss R, Rabkin SD, Tabach Y, et al. A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS). Nature Communications. 10: 2880. PMID 31253799 DOI: 10.1038/S41467-019-10912-8 |
0.571 |
|
| 2019 |
Zhang Z, Chng K, Lingadahalli S, Chen Z, Liu MH, Do HH, Cai S, Rinaldi N, Poh HM, Li G, Sung Y, Heng CL, Core LJ, Tan SK, Ruan XA, et al. An AR-ERG transcriptional signature defined by long range chromatin interactomes in prostate cancer cells. Genome Research. PMID 30606742 DOI: 10.1101/Gr.230243.117 |
0.572 |
|
| 2018 |
Onuchic V, Lurie E, Carrero I, Pawliczek P, Patel RY, Rozowsky J, Galeev T, Huang Z, Altshuler RC, Zhang Z, Harris RA, Coarfa C, Ashmore L, Bertol JW, Fakhouri WD, et al. Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci. Science (New York, N.Y.). PMID 30139913 DOI: 10.1126/Science.Aar3146 |
0.748 |
|
| 2015 |
Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248 |
0.308 |
|
| 2014 |
Koe CT, Li S, Rossi F, Wong JJ, Wang Y, Zhang Z, Chen K, Aw SS, Richardson HE, Robson P, Sung WK, Yu F, Gonzalez C, Wang H. The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages. Elife. 3: e01906. PMID 24618901 DOI: 10.7554/Elife.01906 |
0.338 |
|
| 2013 |
Zhang Z, Li G, Toh KC, Sung WK. 3D chromosome modeling with semi-definite programming and Hi-C data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 831-46. PMID 24195706 DOI: 10.1089/Cmb.2013.0076 |
0.308 |
|
| 2013 |
Zhang Z, Chang CW, Hugo W, Cheung E, Sung WK. Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 237-48. PMID 23461573 DOI: 10.1089/Cmb.2012.0233 |
0.31 |
|
| 2012 |
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, ... ... Zhang Z, et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell. 148: 84-98. PMID 22265404 DOI: 10.1016/J.Cell.2011.12.014 |
0.471 |
|
| 2011 |
Zhang Z, Chang CW, Goh WL, Sung WK, Cheung E. CENTDIST: discovery of co-associated factors by motif distribution. Nucleic Acids Research. 39: W391-9. PMID 21602269 DOI: 10.1093/Nar/Gkr387 |
0.342 |
|
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