Wing-Hung Wong - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Xin J, Zhang H, He Y, Duren Z, Bai C, Chen L, Luo X, Yan DS, Zhang C, Zhu X, Yuan Q, Feng Z, Cui C, Qi X, Ouzhuluobu, ... Wong WH, et al. Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation. Nature Communications. 11: 4928. PMID 33004791 DOI: 10.1038/s41467-020-18638-8  0.6
2020 Li W, Duren Z, Jiang R, Wong WH. A method for scoring the cell type-specific impacts of noncoding variants in personal genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817564 DOI: 10.1073/pnas.1922703117  0.6
2020 Duren Z, Chen X, Xin J, Wang Y, Wong W. Time course regulatory analysis based on paired expression and chromatin accessibility data. Genome Research. PMID 32188700 DOI: 10.1101/gr.257063.119  0.6
2020 Zhang X, Hong D, Ma S, Ward T, Ho M, Pattni R, Duren Z, Stankov A, Bade Shrestha S, Hallmayer J, Wong WH, Reiss AL, Urban AE. Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage. Proceedings of the National Academy of Sciences of the United States of America. PMID 32071206 DOI: 10.1073/pnas.1910003117  0.6
2019 Guan L, Chen X, Wong WH. Detecting strong signals in gene perturbation experiments: An adaptive approach with power guarantee and FDR control. Journal of the American Statistical Association. 2019. PMID 33311819 DOI: 10.1080/01621459.2019.1635484  0.6
2019 Zeng W, Chen X, Duren Z, Wang Y, Jiang R, Wong WH. DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data. Nature Communications. 10: 4613. PMID 31601804 DOI: 10.1038/s41467-019-12547-1  0.6
2019 Li W, Wong WH, Jiang R. DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning. Nucleic Acids Research. PMID 30869141 DOI: 10.1093/nar/gkz167  0.6
2019 Li L, Wang Y, Torkelson JL, Shankar G, Pattison JM, Zhen HH, Fang F, Duren Z, Xin J, Gaddam S, Melo SP, Piekos SN, Li J, Liaw EJ, Chen L, ... ... Wong WH, et al. TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment. Cell Stem Cell. PMID 30686763 DOI: 10.1016/j.stem.2018.12.012  0.6
2019 Li Q, Zhao K, Bustamante CD, Ma X, Wong WH. Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30675030 DOI: 10.1038/s41436-019-0439-8  0.64
2018 Liu Y, Yu C, Daley TP, Wang F, Cao WS, Bhate S, Lin X, Still C, Liu H, Zhao D, Wang H, Xie XS, Ding S, Wong WH, Wernig M, et al. CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming. Cell Stem Cell. PMID 30318302 DOI: 10.1016/j.stem.2018.09.003  0.4
2018 Daley TP, Lin Z, Lin X, Liu Y, Wong WH, Qi LS. CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens. Genome Biology. 19: 159. PMID 30296940 DOI: 10.1186/s13059-018-1538-6  0.4
2018 Duren Z, Chen X, Zamanighomi M, Zeng W, Satpathy AT, Chang HY, Wang Y, Wong WH. Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations. Proceedings of the National Academy of Sciences of the United States of America. PMID 29987051 DOI: 10.1073/pnas.1805681115  0.6
2018 Zamanighomi M, Lin Z, Daley T, Chen X, Duren Z, Schep A, Greenleaf WJ, Wong WH. Unsupervised clustering and epigenetic classification of single cells. Nature Communications. 9: 2410. PMID 29925875 DOI: 10.1038/s41467-018-04629-3  0.6
2018 Li W, Li Q, Kang S, Same M, Zhou Y, Sun C, Liu CC, Matsuoka L, Sher L, Wong WH, Alber F, Zhou XJ. CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data. Nucleic Acids Research. PMID 29897492 DOI: 10.1093/nar/gky423  0.4
2017 Wu M, Lin Z, Ma S, Chen T, Jiang R, Wong WH. Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks. Journal of Molecular Cell Biology. PMID 29300920 DOI: 10.1093/jmcb/mjx059  0.6
2017 Duren Z, Chen X, Jiang R, Wang Y, Wong WH. Modeling gene regulation from paired expression and chromatin accessibility data. Proceedings of the National Academy of Sciences of the United States of America. PMID 28576882 DOI: 10.1073/pnas.1704553114  0.6
2017 Zamanighomi M, Lin Z, Wang Y, Jiang R, Wong WH. Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data. Nucleic Acids Research. PMID 28472398 DOI: 10.1093/nar/gkx358  0.6
2017 Chen X, Yang H, Wong WH. Phased Genome Sequencing Through Chromosome Sorting. Methods in Molecular Biology (Clifton, N.J.). 1551: 171-188. PMID 28138847 DOI: 10.1007/978-1-4939-6750-6_10  0.6
2016 Wang Y, Jiang R, Wong WH. Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data. National Science Review. 3: 240-251. PMID 28690910 DOI: 10.1093/nsr/nww025  0.6
2016 Lin Z, Yang C, Zhu Y, Duchi J, Fu Y, Wang Y, Jiang B, Zamanighomi M, Xu X, Li M, Sestan N, Zhao H, Wong WH. Simultaneous dimension reduction and adjustment for confounding variation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27930330 DOI: 10.1073/pnas.1617317113  0.6
2015 Mu JC, Tootoonchi Afshar P, Mohiyuddin M, Chen X, Li J, Bani Asadi N, Gerstein MB, Wong WH, Lam HY. Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods. Scientific Reports. 5: 14493. PMID 26412485 DOI: 10.1038/srep14493  0.6
2014 Ma X, Xiao L, Wong WH. Learning regulatory programs by threshold SVD regression. Proceedings of the National Academy of Sciences of the United States of America. 111: 15675-80. PMID 25331876 DOI: 10.1073/pnas.1417808111  0.64
2011 Yang H, Chen X, Wong WH. Completely phased genome sequencing through chromosome sorting. Proceedings of the National Academy of Sciences of the United States of America. 108: 12-7. PMID 21169219 DOI: 10.1073/pnas.1016725108  0.6
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