| Year |
Citation |
Score |
| 2019 |
Zhao X, Xiong J, Mao F, Sheng Y, Chen X, Feng L, Dui W, Yang W, Kapusta A, Feschotte C, Coyne RS, Miao W, Gao S, Liu Y. RNAi-dependent repression controls transposable elements in . Genes & Development. PMID 30808657 DOI: 10.1101/Gad.320796.118 |
0.614 |
|
| 2018 |
Trizzino M, Kapusta A, Brown CD. Transposable elements generate regulatory novelty in a tissue-specific fashion. Bmc Genomics. 19: 468. PMID 29914366 DOI: 10.1186/S12864-018-4850-3 |
0.41 |
|
| 2018 |
Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, Domyan E, Suh A, Warren WC, Yandell M, Gilbert MTP, Shapiro MD. Improved Genome Assembly and Annotation for the Rock Pigeon (). G3 (Bethesda, Md.). PMID 29519939 DOI: 10.1534/G3.117.300443 |
0.46 |
|
| 2017 |
Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Kapusta A, et al. Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 16153. PMID 28832025 DOI: 10.1038/Ncomms16153 |
0.654 |
|
| 2017 |
Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Kapusta A, et al. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 15451. PMID 28508897 DOI: 10.1038/Ncomms15451 |
0.628 |
|
| 2017 |
Kapusta A, Suh A, Feschotte C. Dynamics of genome size evolution in birds and mammals. Proceedings of the National Academy of Sciences of the United States of America. PMID 28179571 DOI: 10.1073/Pnas.1616702114 |
0.683 |
|
| 2016 |
Kapusta A, Suh A. Evolution of bird genomes-a transposon's-eye view. Annals of the New York Academy of Sciences. PMID 27997700 DOI: 10.1111/Nyas.13295 |
0.578 |
|
| 2016 |
Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, et al. Structure of the germline genome of Tetrahymenathermophila and relationship to the massively rearranged somatic genome. Elife. 5. PMID 27892853 DOI: 10.7554/Elife.19090 |
0.715 |
|
| 2016 |
Rius N, Guillén Y, Delprat A, Kapusta A, Feschotte C, Ruiz A. Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes. Bmc Genomics. 17: 344. PMID 27164953 DOI: 10.1186/S12864-016-2648-8 |
0.703 |
|
| 2016 |
Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, et al. Author response: Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome Elife. DOI: 10.7554/Elife.19090.045 |
0.682 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6 |
0.641 |
|
| 2015 |
Lynch VJ, Nnamani MC, Kapusta A, Brayer K, Plaza SL, Mazur EC, Emera D, Sheikh SZ, Grützner F, Bauersachs S, Graf A, Young SL, Lieb JD, DeMayo FJ, Feschotte C, et al. Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Reports. 10: 551-61. PMID 25640180 DOI: 10.1016/J.Celrep.2014.12.052 |
0.639 |
|
| 2015 |
Guillén Y, Rius N, Delprat A, Williford A, Muyas F, Puig M, Casillas S, Ràmia M, Egea R, Negre B, Mir G, Camps J, Moncunill V, Ruiz-Ruano FJ, Cabrero J, ... ... Kapusta A, et al. Genomics of ecological adaptation in cactophilic Drosophila. Genome Biology and Evolution. 7: 349-66. PMID 25552534 DOI: 10.1093/Gbe/Evu291 |
0.633 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods Mobile Dna. 6. DOI: 10.1186/s13100-015-0044-6 |
0.548 |
|
| 2014 |
Kapusta A, Feschotte C. Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. Trends in Genetics : Tig. 30: 439-52. PMID 25218058 DOI: 10.1016/J.Tig.2014.08.004 |
0.697 |
|
| 2014 |
Marmignon A, Bischerour J, Silve A, Fojcik C, Dubois E, Arnaiz O, Kapusta A, Malinsky S, Bétermier M. Ku-mediated coupling of DNA cleavage and repair during programmed genome rearrangements in the ciliate Paramecium tetraurelia. Plos Genetics. 10: e1004552. PMID 25166013 DOI: 10.1371/Journal.Pgen.1004552 |
0.491 |
|
| 2014 |
Ha H, Song J, Wang S, Kapusta A, Feschotte C, Chen KC, Xing J. A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements. Bmc Genomics. 15: 545. PMID 24981367 DOI: 10.1186/1471-2164-15-545 |
0.624 |
|
| 2014 |
Campos-Sánchez R, Kapusta A, Feschotte C, Chiaromonte F, Makova KD. Genomic landscape of human, bat, and ex vivo DNA transposon integrations. Molecular Biology and Evolution. 31: 1816-32. PMID 24809961 DOI: 10.1093/Molbev/Msu138 |
0.675 |
|
| 2014 |
Castoe TA, De Koning APJ, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, ... ... Kapusta A, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America (2013) 110, 51, (20645-20650) DOI: 10.1073/pnas. 1314475110) Proceedings of the National Academy of Sciences of the United States of America. 111: 3194. DOI: 10.1073/Pnas.1324133111 |
0.625 |
|
| 2013 |
Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, ... ... Kapusta A, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America. 110: 20645-50. PMID 24297902 DOI: 10.1073/Pnas.1314475110 |
0.685 |
|
| 2013 |
Kapusta A, Kronenberg Z, Lynch VJ, Zhuo X, Ramsay L, Bourque G, Yandell M, Feschotte C. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. Plos Genetics. 9: e1003470. PMID 23637635 DOI: 10.1371/Journal.Pgen.1003470 |
0.735 |
|
| 2013 |
Mitra R, Li X, Kapusta A, Mayhew D, Mitra RD, Feschotte C, Craig NL. Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon. Proceedings of the National Academy of Sciences of the United States of America. 110: 234-9. PMID 23248290 DOI: 10.1073/Pnas.1217548110 |
0.72 |
|
| 2011 |
Kapusta A, Matsuda A, Marmignon A, Ku M, Silve A, Meyer E, Forney JD, Malinsky S, Bétermier M. Highly precise and developmentally programmed genome assembly in Paramecium requires ligase IV-dependent end joining. Plos Genetics. 7: e1002049. PMID 21533177 DOI: 10.1371/Journal.Pgen.1002049 |
0.508 |
|
| 2011 |
Bouhouche K, Gout JF, Kapusta A, Bétermier M, Meyer E. Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling. Nucleic Acids Research. 39: 4249-64. PMID 21216825 DOI: 10.1093/Nar/Gkq1283 |
0.478 |
|
| 2010 |
Arnaiz O, Goût JF, Bétermier M, Bouhouche K, Cohen J, Duret L, Kapusta A, Meyer E, Sperling L. Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia. Bmc Genomics. 11: 547. PMID 20932287 DOI: 10.1186/1471-2164-11-547 |
0.495 |
|
| 2009 |
Baudry C, Malinsky S, Restituito M, Kapusta A, Rosa S, Meyer E, Bétermier M. PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia. Genes & Development. 23: 2478-83. PMID 19884254 DOI: 10.1101/Gad.547309 |
0.497 |
|
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