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Cymon J. Cox - Publications

Affiliations: 
CCMar, Faro, Faro, Portugal 
Area:
Phylogeny, Botanics
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81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Brazão JM, Foster PG, Cox CJ. Data-specific substitution models improve protein-based phylogenetics. Peerj. 11: e15716. PMID 37576497 DOI: 10.7717/peerj.15716  0.589
2022 Yu J, Niu Y, You Y, Cox CJ, Barrett RL, Trias-Blasi A, Guo J, Wen J, Lu L, Chen Z. Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan-Hengduan Mountains. The New Phytologist. PMID 36305244 DOI: 10.1111/nph.18580  0.311
2022 Foster PG, Schrempf D, Szöllősi GJ, Williams TA, Cox CJ, Embley TM. Recoding amino acids to a reduced alphabet may increase or decrease phylogenetic accuracy. Systematic Biology. PMID 35713492 DOI: 10.1093/sysbio/syac042  0.616
2021 Williams TA, Schrempf D, Szöllősi GJ, Cox CJ, Foster PG, Embley TM. Inferring the deep past from molecular data. Genome Biology and Evolution. PMID 33772552 DOI: 10.1093/gbe/evab067  0.65
2020 Williams TA, Cox CJ, Foster PG, Szöllősi GJ, Embley TM. Author Correction: Phylogenomics provides robust support for a two-domains tree of life. Nature Ecology & Evolution. PMID 33077932 DOI: 10.1038/s41559-020-01347-2  0.57
2020 Egger C, Neusser TP, Norenburg J, Leasi F, Buge B, Vannozzi A, Cunha RL, Cox CJ, Jörger KM. Uncovering the shell game with barcodes: diversity of meiofaunal Caecidae snails (Truncatelloidea, Caenogastropoda) from Central America. Zookeys. 968: 1-42. PMID 33005079 DOI: 10.3897/zookeys.968.52986  0.306
2020 Sousa F, Civáň P, Foster PG, Cox CJ. The Chloroplast Land Plant Phylogeny: Analyses Employing Better-Fitting Tree- and Site-Heterogeneous Composition Models. Frontiers in Plant Science. 11: 1062. PMID 32760416 DOI: 10.3389/Fpls.2020.01062  0.691
2020 Sousa F, Civáň P, Brazão J, Foster PG, Cox CJ. The mitochondrial phylogeny of land plants shows support for Setaphyta under composition-heterogeneous substitution models. Peerj. 8: e8995. PMID 32377448 DOI: 10.7717/Peerj.8995  0.67
2019 Williams TA, Cox CJ, Foster PG, Szöllősi GJ, Embley TM. Phylogenomics provides robust support for a two-domains tree of life. Nature Ecology & Evolution. PMID 31819234 DOI: 10.1038/S41559-019-1040-X  0.691
2019 Ettamimi S, Carlier JD, Cox CJ, Elamine Y, Hammani K, Ghazal H, Costa MC. A meta-taxonomic investigation of the prokaryotic diversity of water bodies impacted by acid mine drainage from the São Domingos mine in southern Portugal. Extremophiles : Life Under Extreme Conditions. PMID 31598797 DOI: 10.1007/S00792-019-01136-1  0.316
2019 Louro B, De Moro G, Garcia C, Cox CJ, Veríssimo A, Sabatino SJ, Santos AM, Canário AVM. A haplotype-resolved draft genome of the European sardine (Sardina pilchardus). Gigascience. 8. PMID 31112613 DOI: 10.1093/Gigascience/Giz059  0.317
2019 Liu Y, Johnson MG, Cox CJ, Medina R, Devos N, Vanderpoorten A, Hedenäs L, Bell NE, Shevock JR, Aguero B, Quandt D, Wickett NJ, Shaw AJ, Goffinet B. Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes. Nature Communications. 10: 1485. PMID 30940807 DOI: 10.1038/S41467-019-09454-W  0.497
2019 Karimi E, Keller-Costa T, Slaby BM, Cox CJ, da Rocha UN, Hentschel U, Costa R. Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria. Scientific Reports. 9: 1999. PMID 30760820 DOI: 10.1038/S41598-019-38737-X  0.336
2019 Bruno de Sousa C, Cox CJ, Brito L, Pavão MM, Pereira H, Ferreira A, Ginja C, Campino L, Bermejo R, Parente M, Varela J. Improved phylogeny of brown algae Cystoseira (Fucales) from the Atlantic-Mediterranean region based on mitochondrial sequences. Plos One. 14: e0210143. PMID 30699208 DOI: 10.1371/Journal.Pone.0210143  0.427
2018 Lu L, Cox CJ, Mathews S, Wang W, Wen J, Chen Z. Optimal data partitioning, multispecies coalescent and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae). Cladistics : the International Journal of the Willi Hennig Society. 34: 57-77. PMID 34641639 DOI: 10.1111/cla.12191  0.348
2018 de Sousa F, Foster PG, Donoghue PCJ, Schneider H, Cox CJ. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.). The New Phytologist. PMID 30411803 DOI: 10.1111/Nph.15587  0.691
2018 Puttick MN, Morris JL, Williams TA, Cox CJ, Edwards D, Kenrick P, Pressel S, Wellman CH, Schneider H, Pisani D, Donoghue PCJ. The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte. Current Biology : Cb. PMID 29456145 DOI: 10.1016/J.Cub.2018.01.063  0.496
2018 Cox CJ. Land Plant Molecular Phylogenetics: A Review with Comments on Evaluating Incongruence Among Phylogenies Critical Reviews in Plant Sciences. 37: 113-127. DOI: 10.1080/07352689.2018.1482443  0.376
2017 Lu L, Cox CJ, Mathews S, Wang W, Wen J, Chen Z. Optimal data partitioning, multispecies coalescent and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae) Cladistics. 34: 57-77. DOI: 10.1111/Cla.12191  0.451
2016 Jonathan Shaw A, Devos N, Liu Y, Cox CJ, Goffinet B, Flatberg KI, Shaw B. Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss). Annals of Botany. PMID 27268484 DOI: 10.1093/Aob/Mcw086  0.476
2016 Rathore OS, Faustino A, Prudêncio P, Van Damme P, Cox CJ, Martinho RG. Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms. Scientific Reports. 6: 21304. PMID 26861501 DOI: 10.1038/Srep21304  0.309
2016 Laenen B, Machac A, Gradstein SR, Shaw B, Patiño J, Désamoré A, Goffinet B, Cox CJ, Shaw J, Vanderpoorten A. Geographical range in liverworts: Does sex really matter? Journal of Biogeography. 43: 627-635. DOI: 10.1111/Jbi.12661  0.355
2016 Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, González-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia Biological Journal of the Linnean Society. 117: 177-191. DOI: 10.1111/Bij.12666  0.356
2015 Civáň P, Craig H, Cox CJ, Brown TA. Three geographically separate domestications of Asian rice. Nature Plants. 1: 15164. PMID 27251535 DOI: 10.1038/Nplants.2015.164  0.35
2015 Marques CL, Fernández I, Viegas MN, Cox CJ, Martel P, Rosa J, Cancela ML, Laizé V. Comparative analysis of zebrafish bone morphogenetic proteins 2, 4 and 16: molecular and evolutionary perspectives. Cellular and Molecular Life Sciences : Cmls. PMID 26341094 DOI: 10.1007/S00018-015-2024-X  0.32
2015 Ramos AA, Weydmann A, Cox CJ, Canário AV, Serrão EA, Pearson GA. A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures. Marine Genomics. PMID 25863290 DOI: 10.1016/J.Margen.2015.03.014  0.377
2014 Hardoim CC, Cardinale M, Cúcio AC, Esteves AI, Berg G, Xavier JR, Cox CJ, Costa R. Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges. Frontiers in Microbiology. 5: 611. PMID 25477868 DOI: 10.3389/Fmicb.2014.00611  0.314
2014 Laenen B, Shaw B, Schneider H, Goffinet B, Paradis E, Désamoré A, Heinrichs J, Villarreal JC, Gradstein SR, McDaniel SF, Long DG, Forrest LL, Hollingsworth ML, Crandall-Stotler B, Davis EC, ... ... Cox CJ, et al. Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nature Communications. 5: 5134. PMID 25346115 DOI: 10.1038/Ncomms6134  0.411
2014 Liu Y, Cox CJ, Wang W, Goffinet B. Mitochondrial phylogenomics of early land plants: Mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias Systematic Biology. 63: 862-878. PMID 25070972 DOI: 10.1093/Sysbio/Syu049  0.513
2014 Li B, Lopes JS, Foster PG, Embley TM, Cox CJ. Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins. Molecular Biology and Evolution. 31: 1697-709. PMID 24795089 DOI: 10.1093/Molbev/Msu105  0.723
2014 Silva IA, Cox CJ, Leite RB, Cancela ML, Conceição N. Evolutionary conservation of TFIIH subunits: implications for the use of zebrafish as a model to study TFIIH function and regulation. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 172: 9-20. PMID 24731924 DOI: 10.1016/J.Cbpb.2014.03.007  0.35
2014 Civaň P, Foster PG, Embley MT, Séneca A, Cox CJ. Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants. Genome Biology and Evolution. 6: 897-911. PMID 24682153 DOI: 10.1093/Gbe/Evu061  0.648
2014 Cox CJ, Li B, Foster PG, Embley TM, Civán P. Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions. Systematic Biology. 63: 272-9. PMID 24399481 DOI: 10.1093/Sysbio/Syt109  0.672
2014 Cox CJ, Goffinet B, Wickett NJ, Boles SB, Shaw AJ. Moss diversity: A molecular phylogenetic analysis of genera Phytotaxa. 9: 175. DOI: 10.11646/Phytotaxa.9.1.10  0.487
2013 Williams TA, Foster PG, Cox CJ, Embley TM. An archaeal origin of eukaryotes supports only two primary domains of life. Nature. 504: 231-6. PMID 24336283 DOI: 10.1038/Nature12779  0.652
2013 Hardoim CC, Cox CJ, Peixoto RS, Rosado AS, Costa R, van Elsas JD. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva. Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. 44: 329-34. PMID 24159324 DOI: 10.1590/S1517-83822013000100048  0.339
2013 Cox CJ, Foster PG. A 20-state empirical amino-acid substitution model for green plant chloroplasts. Molecular Phylogenetics and Evolution. 68: 218-20. PMID 23567023 DOI: 10.1016/J.Ympev.2013.03.030  0.644
2012 Hardoim CCP, Esteves AIS, Pires FR, Gonçalves JMS, Cox CJ, Xavier JR, Costa R. Phylogenetically and Spatially Close Marine Sponges Harbour Divergent Bacterial Communities Plos One. 7. PMID 23300853 DOI: 10.1371/Journal.Pone.0053029  0.365
2012 Williams TA, Foster PG, Nye TM, Cox CJ, Embley TM. A congruent phylogenomic signal places eukaryotes within the Archaea. Proceedings. Biological Sciences / the Royal Society. 279: 4870-9. PMID 23097517 DOI: 10.1098/Rspb.2012.1795  0.703
2012 Huttunen S, Bell N, Bobrova VK, Buchbender V, Buck WR, Cox CJ, Goffinet B, Hedenäs L, Ho BC, Ignatov MS, Krug M, Kuznetsova O, Milyutina IA, Newton A, Olsson S, et al. Disentangling knots of rapid evolution: Origin and diversification of the moss order Hypnales Journal of Bryology. 34: 187-211. DOI: 10.1179/1743282012Y.0000000013  0.475
2011 Forrest LL, Wickett NJ, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure Plant Ecology and Evolution. 144: 29-43. DOI: 10.5091/Plecevo.2011.535  0.37
2010 Shaw AJ, Cox CJ, Buck WR, Devos N, Buchanan AM, Cave L, Seppelt R, Shaw B, Larraín J, Andrus R, Greilhuber J, Temsch EM. Newly resolved relationships in an early land plant lineage: Bryophyta class Sphagnopsida (peat mosses). American Journal of Botany. 97: 1511-31. PMID 21616905 DOI: 10.3732/Ajb.1000055  0.475
2010 Shaw AJ, Devos N, Cox CJ, Boles SB, Shaw B, Buchanan AM, Cave L, Seppelt R. Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling? Molecular Phylogenetics and Evolution. 55: 1139-45. PMID 20102745 DOI: 10.1016/J.Ympev.2010.01.020  0.403
2009 Foster PG, Cox CJ, Embley TM. The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2197-207. PMID 19571240 DOI: 10.1098/Rstb.2009.0034  0.694
2009 Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics (Oxford, England). 25: 1422-3. PMID 19304878 DOI: 10.1093/Bioinformatics/Btp163  0.331
2009 Waeschenbach A, Cox CJ, Littlewood DTJ, Porter JS, Taylor PD. First molecular estimate of cyclostome bryozoan phylogeny confirms extensive homoplasy among skeletal characters used in traditional taxonomy Molecular Phylogenetics and Evolution. 52: 241-251. PMID 19236933 DOI: 10.1016/J.Ympev.2009.02.002  0.438
2008 Cox CJ, Foster PG, Hirt RP, Harris SR, Embley TM. The archaebacterial origin of eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 105: 20356-61. PMID 19073919 DOI: 10.1073/Pnas.0810647105  0.692
2008 Shaw AJ, Holz I, Cox CJ, Goffinet B. Phylogeny, character evolution, and biogeography of the gondwanic moss family Hypopterygiaceae (Bryophyta) Systematic Botany. 33: 21-30. DOI: 10.1600/036364408783887311  0.385
2007 Kauff F, Cox CJ, Lutzoni F. WASABI: an automated sequence processing system for multigene phylogenies. Systematic Biology. 56: 523-31. PMID 17562476 DOI: 10.1080/10635150701395340  0.444
2007 Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and phylogenetic significance of the 71-kb inversion in the plastid genome in Funariidae (Bryophyta). Annals of Botany. 99: 747-53. PMID 17337480 DOI: 10.1093/Aob/Mcm010  0.395
2006 James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110  0.449
2005 Shaw AJ, Cox CJ. Variation in "biodiversity value" of peatmoss species in Sphagnum section Acutifolia (Sphagnaceae). American Journal of Botany. 92: 1774-83. PMID 21646095 DOI: 10.3732/Ajb.92.11.1774  0.405
2005 Goffinet B, Wickett NJ, Shaw AJ, Cox CJ. Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses Taxon. 54: 353-360. DOI: 10.2307/25065363  0.39
2005 Shaw AJ, Cox CJ, Goffinet B. Global patterns of moss diversity: Taxonomic and molecular inferences Taxon. 54: 337-352. DOI: 10.2307/25065362  0.407
2005 Shaw AJ, Melosik I, Cox CJ, Boles SB. Divergent and reticulate evolution in closely related species of Sphagnum section Subsecunda Bryologist. 108: 363-376. DOI: 10.1639/0007-2745(2005)108[0363:Dareic]2.0.Co;2  0.387
2005 Shaw AJ, Cox CJ, Boles SB. Phylogeny, species delimitation, and recombination in Sphagnum section Acutifolia Systematic Botany. 30: 16-33. DOI: 10.1600/0363644053661823  0.439
2004 Goffinet B, Shaw AJ, Cox CJ. Phylogenetic inferences in the dung-moss family Splachnaceae from analyses of cpDNA sequence data and implications for the evolution of entomophily. American Journal of Botany. 91: 748-59. PMID 21653429 DOI: 10.3732/Ajb.91.5.748  0.413
2004 Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/Ajb.91.10.1446  0.477
2004 Diezmann S, Cox CJ, Schönian G, Vilgalys RJ, Mitchell TG. Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. Journal of Clinical Microbiology. 42: 5624-35. PMID 15583292 DOI: 10.1128/Jcm.42.12.5624-5635.2004  0.444
2004 Vanderpoorten A, Shaw AJ, Cox CJ. Evolution of multiple paralogous adenosine kinase genes in the moss genus Hygroamblystegium: phylogenetic implications. Molecular Phylogenetics and Evolution. 31: 505-16. PMID 15062791 DOI: 10.1016/J.Ympev.2003.09.020  0.484
2004 Shaw J, Cox CJ, Boles SB. Phylogenetic relationships among Sphagnum sections: Hemitheca, Isocladus, and Subsecunda Bryologist. 107: 189-196. DOI: 10.1639/0007-2745(2004)107[0189:Prassh]2.0.Co;2  0.351
2004 Schneider H, Russell SJ, Cox CJ, Barker F, Henderson S, Rumsey F, Barrett J, Gibby M, Vogel JC. Chloroplast phylogeny of asplenioid ferns based on rbcL and trnL-F spacer sequences (Polypodiidae, Aspleniaceae) and its implications for biogeography Systematic Botany. 29: 260-274. DOI: 10.1600/036364404774195476  0.436
2004 Cox CJ, Goffinet B, Jonathan Shaw A, Boles SB. Phylogenetic relationships among the mosses based on heterogeneous Bayesian analysis of multiple genes from multiple genomic compartments Systematic Botany. 29: 234-250. DOI: 10.1600/036364404774195458  0.503
2004 Hedderson TA, Murray DJ, Cox CJ, Nowell TL. Phylogenetic Relationships of Haplolepideous Mosses (Dicranidae) Inferred from rps4 Gene Sequences Systematic Botany. 29: 29-41. DOI: 10.1600/036364404772973960  0.488
2004 Buck WR, Cox CJ, Shaw AJ, Goffinet B. Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales Systematics and Biodiversity. 2: 121-145. DOI: 10.1017/S1477200004001410  0.408
2003 Shaw AJ, Cox CJ, Boles SB. Polarity of peatmoss (Sphagnum) evolution: who says bryophytes have no roots? American Journal of Botany. 90: 1777-87. PMID 21653354 DOI: 10.3732/Ajb.90.12.1777  0.463
2003 Shaw AJ, Cox CJ, Goffinet B, Buck WR, Boles SB. Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (Bryophyta). Evolution; International Journal of Organic Evolution. 57: 2226-41. PMID 14628911 DOI: 10.1111/J.0014-3820.2003.Tb00235.X  0.424
2003 Shaw AJ, Cox CJ, Boles SB. Global patterns in peatmoss biodiversity. Molecular Ecology. 12: 2553-70. PMID 12969461 DOI: 10.1046/J.1365-294X.2003.01929.X  0.425
2003 Cox CJ, Hedderson TAJ. Phylogenetic relationships within the moss family Bryaceae based on chloroplast DNA evidence Journal of Bryology. 25: 31-40. DOI: 10.1179/037366803125002635  0.394
2003 Pedersen N, Cox CJ, Hedenäs L. Phylogeny of the moss family Bryaceae inferred from chloroplast DNA sequences and morphology Systematic Botany. 28: 471-482. DOI: 10.1043/02-46.1  0.438
2003 Vanderpoorten A, Goffinet B, Hedenäs L, Cox CJ, Shaw AJ. A taxonomic reassessment of the Vittiaceae (Hypnales, Bryopsida): Evidence from phylogenetic analyses of combined chloroplast and nuclear sequence data Plant Systematics and Evolution. 241: 1-12. DOI: 10.1007/S00606-003-0032-Z  0.418
2002 Vanderpoorten A, Hedenäs L, Cox CJ, Shaw AJ. Phylogeny and morphological evolution of the amblystegiaceae (Bryopsida). Molecular Phylogenetics and Evolution. 23: 1-21. PMID 12182399 DOI: 10.1006/Mpev.2001.1067  0.439
2002 Vanderpoorten A, Hedenäs L, Cox CJ, Shaw AJ. Circumscription, classification, and taxonomy of Amblystegiaceae (Bryopsida) inferred from nuclear and chloroplast DNA sequence data and morphology Taxon. 51: 115-122. DOI: 10.2307/1554968  0.418
2002 Buck WR, Shaw AJ, Cox CJ. A new species of Leskeodon (Daltoniaceae) from Ecuador Brittonia. 54: 178-180. DOI: 10.1663/0007-196X(2002)054[0178:Ansold]2.0.Co;2  0.344
2002 Pinter I, Bakker F, Barrett J, Cox C, Gibby M, Henderson S, Morgan-Richards M, Rumsey F, Russell S, Trewick S, Schneider H, Vogel J. Phylogenetic and biosystematic relationships in four highly disjunct polyploid complexes in the subgenera Ceterach and Phyllitis in Asplenium (Aspleniaceae) Organisms Diversity and Evolution. 2: 299-311. DOI: 10.1078/1439-6092-00050  0.374
2001 Goffinet B, Cox CJ, Shaw AJ, Hedderson TAJ. The Bryophyta (Mosses): Systematic and Evolutionary Inferences from an rps4 Gene (cpDNA) Phylogeny. Annals of Botany. 87: 191-208. PMID 32050736 DOI: 10.1006/Anbo.2000.1318  0.477
2000 Cox CJ, Goffinet B, Newton AE, Shaw AJ, Hedderson TAJ. Phylogenetic relationships among the diplolepideous-alternate mosses (Bryidae) inferred from nuclear and chloroplast DNA sequences Bryologist. 103: 224-241. DOI: 10.1639/0007-2745(2000)103[0224:Pratda]2.0.Co;2  0.399
2000 Goffinet B, Cox CJ. Phylogenetic relationships among basal-most arthrodontous mosses with special emphasis on the evolutionary significance of the Funariineae Bryologist. 103: 212-223. DOI: 10.1639/0007-2745(2000)103[0212:Prabma]2.0.Co;2  0.438
2000 Newton AE, Cox CJ, Duckett JG, Wheeler JA, Goffinet B, Hedderson TAJ, Mishler BD. Evolution of the major moss lineages: Phylogenetic analyses based on multiple gene sequences and morphology Bryologist. 103: 187-211. DOI: 10.1639/0007-2745(2000)103[0187:Eotmml]2.0.Co;2  0.505
1999 Hedderson TA, Cox CJ, Gibbings JG. Phylogenetic relationships of the Wardiaceae (Musei); evidence from 18s rRNA and rps4 gene sequences Bryologist. 102: 26-31. DOI: 10.2307/3244455  0.448
1999 Cox CJ, Hedderson TAJ. Phylogenetic relationships among the ciliate arthrodontous mosses: Evidence from chloroplast and nuclear DNA sequences Plant Systematics and Evolution. 215: 119-139. DOI: 10.1007/Bf00984651  0.45
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