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Lindsay Pino - Publications

Affiliations: 
2019- University of Pennsylvania School of Medicine, Philadelphia, PA, United States 
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Allen C, Meinl R, Paez JS, Searle BC, Just S, Pino LK, Fondrie WE. nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics Workflows. Journal of Proteome Research. PMID 37417926 DOI: 10.1021/acs.jproteome.2c00613  0.779
2023 Lauman R, Kim HJ, Pino LK, Scacchetti A, Xie Y, Robison F, Sidoli S, Bonasio R, Garcia BA. Expanding the Epitranscriptomic RNA Sequencing and Modification Mapping Mass Spectrometry Toolbox with Field Asymmetric Waveform Ion Mobility and Electrochemical Elution Liquid Chromatography. Analytical Chemistry. PMID 36916610 DOI: 10.1021/acs.analchem.2c04114  0.731
2023 Martinez TF, Lyons-Abbott S, Bookout AL, De Souza EV, Donaldson C, Vaughan JM, Lau C, Abramov A, Baquero AF, Baquero K, Friedrich D, Huard J, Davis R, Kim B, Koch T, ... ... Pino LK, et al. Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins. Cell Metabolism. 35: 166-183.e11. PMID 36599300 DOI: 10.1016/j.cmet.2022.12.004  0.616
2021 Wang SY, Pollina EA, Wang IH, Pino LK, Bushnell HL, Takashima K, Fritsche C, Sabin G, Garcia BA, Greer PL, Greer EL. Role of epigenetics in unicellular to multicellular transition in Dictyostelium. Genome Biology. 22: 134. PMID 33947439 DOI: 10.1186/s13059-021-02360-9  0.325
2021 Pino LK, Baeza J, Lauman R, Schilling B, Garcia BA. Improved SILAC Quantification with Data-Independent Acquisition to Investigate Bortezomib-Induced Protein Degradation. Journal of Proteome Research. PMID 33764077 DOI: 10.1021/acs.jproteome.0c00938  0.747
2020 Pino LK, Rose J, O'Broin A, Shah S, Schilling B. Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications. Biochemical Society Transactions. PMID 33079175 DOI: 10.1042/BST20191091  0.394
2020 Chiao YA, Zhang H, Sweetwyne M, Whitson J, Ting YS, Basisty N, Pino LK, Quarles E, Nguyen NH, Campbell MD, Zhang T, Gaffrey MJ, Merrihew G, Wang L, Yue Y, et al. Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice. Elife. 9. PMID 32648542 DOI: 10.7554/Elife.55513  0.446
2020 Pino LK, Just SC, MacCoss MJ, Searle BC. Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries. Molecular & Cellular Proteomics : McP. PMID 32312845 DOI: 10.1074/Mcp.P119.001913  0.761
2020 Federation AJ, Nandakumar V, Searle BC, Stergachis A, Wang H, Pino LK, Merrihew G, Ting YS, Howard N, Kutyavin T, MacCoss MJ, Stamatoyannopoulos JA. Highly Parallel Quantification and Compartment Localization of Transcription Factors and Nuclear Proteins. Cell Reports. 30: 2463-2471.e5. PMID 32101728 DOI: 10.1016/J.Celrep.2020.01.096  0.721
2020 Pino LK, Searle BC, Yang HY, Hoofnagle AN, Noble WS, MacCoss MJ. Matrix-matched calibration curves for assessing analytical figures of merit in quantitative proteomics. Journal of Proteome Research. PMID 32037841 DOI: 10.1021/Acs.Jproteome.9B00666  0.753
2020 Chiao YA, Zhang H, Sweetwyne M, Whitson J, Ting YS, Basisty N, Pino LK, Quarles E, Nguyen N, Campbell MD, Zhang T, Gaffrey MJ, Merrihew G, Wang L, Yue Y, et al. Author response: Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice Elife. DOI: 10.7554/Elife.55513.Sa2  0.406
2019 Pino LK, Searle BC, Yang HY. Team COUNCIL OF RICKS submission for EUPA YPIC 2017. Eupa Open Proteomics. 22: 22-24. PMID 31890550 DOI: 10.1016/J.Euprot.2019.07.009  0.751
2019 Pino L, Lin A, Bittremieux W. 2018 YPIC Challenge: A case study in characterizing an unknown protein sample. Journal of Proteome Research. PMID 31556620 DOI: 10.1021/Acs.Jproteome.9B00384  0.412
2018 Searle BC, Pino LK, Egertson JD, Ting YS, Lawrence RT, MacLean BX, Villén J, MacCoss MJ. Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry. Nature Communications. 9: 5128. PMID 30510204 DOI: 10.1038/S41467-018-07454-W  0.791
2018 Pino LK, Searle BC, Huang E, Noble WS, Hoofnagle AN, MacCoss MJ. Calibration using a single-point external reference material harmonizes quantitative mass spectrometry proteomics data between platforms and laboratories. Analytical Chemistry. PMID 30350613 DOI: 10.1021/acs.analchem.8b04581  0.776
2018 Galitzine C, Egertson J, Abbatiello SE, Henderson CM, Pino L, MacCoss MJ, Hoofnagle AN, Vitek O. Nonlinear regression improves accuracy of characterization of multiplexed mass spectrometric assays. Molecular & Cellular Proteomics : McP. PMID 29438992 DOI: 10.1074/Mcp.Ra117.000322  0.761
2017 Pino LK, Searle BC, Bollinger JG, Nunn B, MacLean B, MacCoss MJ. The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics. Mass Spectrometry Reviews. PMID 28691345 DOI: 10.1002/Mas.21540  0.785
2016 Abelin JG, Patel J, Lu X, Feeney CM, Fagbami L, Creech AL, Hu R, Lam D, Davison D, Pino L, Qiao JW, Kuhn E, Officer A, Li J, Abbatiello S, et al. Reduced-representation phosphosignatures measured by quantitative targeted MS capture cellular states and enable large-scale comparison of drug-induced phenotypes. Molecular & Cellular Proteomics : McP. PMID 26912667 DOI: 10.1074/Mcp.M116.058354  0.435
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