Year |
Citation |
Score |
2023 |
Pucker B, Walker-Hale N, Dzurlic J, Yim WC, Cushman JC, Crum A, Yang Y, Brockington SF. Multiple mechanisms explain loss of anthocyanins from betalain-pigmented Caryophyllales, including repeated wholesale loss of a key anthocyanidin synthesis enzyme. The New Phytologist. PMID 37897060 DOI: 10.1111/nph.19341 |
0.686 |
|
2023 |
Mohn RA, Zenil-Ferguson R, Krueger TA, Fleischmann AS, Cross AT, Yang Y. Dramatic difference in rate of chromosome number evolution among sundew (Drosera L., Droseraceae) lineages. Evolution; International Journal of Organic Evolution. PMID 37638607 DOI: 10.1093/evolut/qpad153 |
0.708 |
|
2022 |
Morales-Briones DF, Lin N, Huang EY, Grossenbacher DL, Sobel JM, Gilmore CD, Tank DC, Yang Y. Phylogenomic analyses in Phrymaceae reveal extensive gene tree discordance in relationships among major clades. American Journal of Botany. PMID 35462411 DOI: 10.1002/ajb2.1860 |
0.792 |
|
2022 |
Tefarikis DT, Morales-Briones DF, Yang Y, Edwards G, Kadereit G. On the hybrid origin of the C Salsola divaricata agg. (Amaranthaceae) from C and C parental lineages. The New Phytologist. PMID 35288945 DOI: 10.1111/nph.18098 |
0.724 |
|
2021 |
Morales-Briones DF, Gehrke B, Huang CH, Liston A, Ma H, Marx HE, Tank DC, Yang Y. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology. PMID 33978764 DOI: 10.1093/sysbio/syab032 |
0.786 |
|
2020 |
Morales-Briones DF, Kadereit G, Tefarikis DT, Moore MJ, Smith SA, Brockington SF, Timoneda A, Yim WC, Cushman JC, Yang Y. Disentangling Sources of Gene Tree Discordance in Phylogenomic Datasets: Testing Ancient Hybridizations in Amaranthaceae s.l. Systematic Biology. PMID 32785686 DOI: 10.1093/Sysbio/Syaa066 |
0.798 |
|
2019 |
Qiu Y, Hirsch CD, Yang Y, Watkins E. Towards Improved Molecular Identification Tools in Fine Fescue ( L., Poaceae) Turfgrasses: Nuclear Genome Size, Ploidy, and Chloroplast Genome Sequencing. Frontiers in Genetics. 10: 1223. PMID 31867041 DOI: 10.3389/Fgene.2019.01223 |
0.404 |
|
2019 |
Feng T, Yang Y, Busta L, Cahoon EB, Wang H, Lu S. FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids. Plant Physiology. PMID 31420445 DOI: 10.1104/Pp.19.00800 |
0.415 |
|
2018 |
Wang N, Yang Y, Moore MJ, Brockington SF, Walker JF, Brown JW, Liang B, Feng T, Edwards C, Mikenas J, Olivieri J, Hutchison V, Timoneda A, Stoughton T, Puente R, et al. Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments. Molecular Biology and Evolution. PMID 30371871 DOI: 10.1093/Molbev/Msy200 |
0.793 |
|
2018 |
Yang Y, Morden CW, Sporck-Koehler MJ, Sack L, Wagner WL, Berry PE. Repeated range expansion and niche shift in a volcanic hotspot archipelago: Radiation of C Hawaiian subgenus (Euphorbiaceae). Ecology and Evolution. 8: 8523-8536. PMID 30250720 DOI: 10.1002/Ece3.4354 |
0.647 |
|
2018 |
Walker JF, Yang Y, Feng T, Timoneda A, Mikenas J, Hutchison V, Edwards C, Wang N, Ahluwalia S, Olivieri J, Walker-Hale N, Majure LC, Puente R, Kadereit G, Lauterbach M, et al. From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales. American Journal of Botany. PMID 29738076 DOI: 10.1002/Ajb2.1069 |
0.735 |
|
2018 |
McKain MR, Johnson MG, Uribe-Convers S, Eaton D, Yang Y. Practical considerations for plant phylogenomics. Applications in Plant Sciences. 6: e1038. PMID 29732268 DOI: 10.1002/Aps3.1038 |
0.764 |
|
2018 |
Gitzendanner MA, Yang Y, Wickett NJ, McKain M, Beaulieu JM. Methods for exploring the plant tree of life Applications in Plant Sciences. 6: e1039. DOI: 10.1002/Aps3.1039 |
0.304 |
|
2017 |
Lopez-Nieves S, Yang Y, Timoneda A, Wang M, Feng T, Smith SA, Brockington SF, Maeda HA. Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales. The New Phytologist. PMID 28990194 DOI: 10.1111/Nph.14822 |
0.537 |
|
2017 |
Yang Y, Moore MJ, Brockington SF, Mikenas J, Olivieri J, Walker JF, Smith SA. Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events. The New Phytologist. PMID 28944472 DOI: 10.1111/Nph.14812 |
0.731 |
|
2017 |
Smith SA, Brown JW, Yang Y, Bruenn R, Drummond CP, Brockington SF, Walker JF, Last N, Douglas NA, Moore MJ. Disparity, diversity, and duplications in the Caryophyllales. The New Phytologist. PMID 28892163 DOI: 10.1111/Nph.14772 |
0.779 |
|
2017 |
Walker JF, Yang Y, Moore MJ, Mikenas J, Timoneda A, Brockington SF, Smith SA. Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales. American Journal of Botany. PMID 28634254 DOI: 10.3732/Ajb.1700083 |
0.74 |
|
2017 |
Yang Y, Moore MJ, Brockington SF, Timoneda A, Feng T, Marx HE, Walker JF, Smith SA. An efficient field and laboratory workflow for plant phylotranscriptomic projects. Applications in Plant Sciences. 5. PMID 28337391 DOI: 10.3732/Apps.1600128 |
0.671 |
|
2015 |
Smith SA, Moore MJ, Brown JW, Yang Y. Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants. Bmc Evolutionary Biology. 15: 150. PMID 26239519 DOI: 10.1186/S12862-015-0423-0 |
0.698 |
|
2015 |
Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA. Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales. The New Phytologist. PMID 25966996 DOI: 10.1111/Nph.13441 |
0.595 |
|
2015 |
Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA. Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing. Molecular Biology and Evolution. 32: 2001-14. PMID 25837578 DOI: 10.1093/Molbev/Msv081 |
0.647 |
|
2015 |
Smith SA, Moore MJ, Brown JW, Yang Y. Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants Bmc Evolutionary Biology. 15. DOI: 10.1186/s12862-015-0423-0 |
0.651 |
|
2014 |
Horn JW, Xi Z, Riina R, Peirson JA, Yang Y, Dorsey BL, Berry PE, Davis CC, Wurdack KJ. Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway. Evolution; International Journal of Organic Evolution. 68: 3485-504. PMID 25302554 DOI: 10.1111/Evo.12534 |
0.621 |
|
2014 |
Yang Y, Smith SA. Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics. Molecular Biology and Evolution. 31: 3081-92. PMID 25158799 DOI: 10.1093/Molbev/Msu245 |
0.575 |
|
2014 |
Yang X, Yang Y, Ji C, Feng T, Shi Y, Lin L, Ma J, He J. Large-scale patterns of stomatal traits in Tibetan and Mongolian grassland species Basic and Applied Ecology. 15: 122-132. DOI: 10.1016/J.Baae.2014.01.003 |
0.315 |
|
2013 |
Yang Y, Smith SA. Optimizing de novo assembly of short-read RNA-seq data for phylogenomics. Bmc Genomics. 14: 328. PMID 23672450 DOI: 10.1186/1471-2164-14-328 |
0.486 |
|
2012 |
Yang Y, Riina R, Morawetz JJ, Haevermans T, Aubriot X, Berry PE. Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae) Taxon. 61: 764-789. DOI: 10.1002/Tax.614005 |
0.56 |
|
2011 |
Yang Y, Berry PE. Phylogenetics of the Chamaesyce clade (Euphorbia, Euphorbiaceae): reticulate evolution and long-distance dispersal in a prominent C4 lineage. American Journal of Botany. 98: 1486-503. PMID 21875975 DOI: 10.3732/Ajb.1000496 |
0.619 |
|
2011 |
Berry PE, Steinmann VW, Yang Y. 2011) Proposal to conserve the name Euphorbia acuta Engelm. Against E. Acuta Bellardi ex Colla (Euphorbiaceae) Taxon. 60: 603-604. DOI: 10.1002/Tax.602042 |
0.533 |
|
2007 |
Hendry TA, Bin W, Yang Y, Davis EC, Braggins JE, Schuster RM, Qiu YL. Evaluating phylogenetic positions of four liverworts from New Zealand, Neogrollea notabilis, Jackiella curvata, Goebelobryum unguiculatum and Herzogianthus vaginatus, using three chloroplast genes Bryologist. 110: 738-751. DOI: 10.1639/0007-2745(2007)110[738:Eppofl]2.0.Co;2 |
0.412 |
|
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