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Maricel G. Kann - Publications

Affiliations: 
Biological Sciences University of Maryland, Baltimore County, Baltimore, MD, United States 
Area:
Computational Biology
Website:
http://biology.umbc.edu/directory/faculty/kann/
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Voskanian A, Katsonis P, Lichtarge O, Pejaver V, Radivojac P, Mooney SD, Capriotti E, Bromberg Y, Wang Y, Miller M, Martelli PL, Savojardo C, Babbi G, Casadio R, Cao Y, ... ... Kann MG, et al. Assessing the performance of in-silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer. Human Mutation. PMID 31241222 DOI: 10.1002/Humu.23849  0.37
2018 Peters B, Brenner SE, Wang E, Slonim D, Kann MG. Putting benchmarks in their rightful place: The heart of computational biology. Plos Computational Biology. 14: e1006494. PMID 30408027 DOI: 10.1371/Journal.Pcbi.1006494  0.313
2018 Cirincione AG, Clark KL, Kann MG. Pathway networks generated from human disease phenome. Bmc Medical Genomics. 11: 75. PMID 30255817 DOI: 10.1186/S12920-018-0386-2  0.359
2017 Gauran IIM, Park J, Lim J, Park D, Zylstra J, Peterson T, Kann M, Spouge JL. Empirical null estimation using zero-inflated discrete mixture distributions and its application to protein domain data. Biometrics. PMID 28940296 DOI: 10.1111/Biom.12779  0.358
2017 Peterson TA, Gauran IIM, Park J, Park D, Kann MG. Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples. Plos Computational Biology. 13: e1005428. PMID 28426665 DOI: 10.1371/Journal.Pcbi.1005428  0.429
2016 Peterson TA, Mort M, Cooper DN, Radivojac P, Kann MG, Mooney SD. Regulatory Single Nucleotide Variant Predictor (RSVP) Increases Predictive Performance of Functional Regulatory Variants. Human Mutation. PMID 27406314 DOI: 10.1002/Humu.23049  0.393
2014 Burger JD, Doughty E, Khare R, Wei CH, Mishra R, Aberdeen J, Tresner-Kirsch D, Wellner B, Kann MG, Lu Z, Hirschman L. Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing. Database : the Journal of Biological Databases and Curation. 2014. PMID 25246425 DOI: 10.1093/Database/Bau094  0.35
2013 Peterson TA, Doughty E, Kann MG. Towards precision medicine: advances in computational approaches for the analysis of human variants. Journal of Molecular Biology. 425: 4047-63. PMID 23962656 DOI: 10.1016/J.Jmb.2013.08.008  0.384
2013 Peterson TA, Park D, Kann MG. A protein domain-centric approach for the comparative analysis of human and yeast phenotypically relevant mutations. Bmc Genomics. 14: S5. PMID 23819456 DOI: 10.1186/1471-2164-14-S3-S5  0.438
2012 Gonzalez MW, Kann MG. Chapter 4: Protein interactions and disease. Plos Computational Biology. 8: e1002819. PMID 23300410 DOI: 10.1371/Journal.Pcbi.1002819  0.561
2012 Nehrt NL, Peterson TA, Park D, Kann MG. Domain landscapes of somatic mutations in cancer. Bmc Genomics. 13: S9. PMID 22759657 DOI: 10.1186/1471-2164-13-S4-S9  0.385
2012 Rance B, Doughty E, Demner-Fushman D, Kann MG, Bodenreider O. A mutation-centric approach to identifying pharmacogenomic relations in text. Journal of Biomedical Informatics. 45: 835-41. PMID 22683993 DOI: 10.1016/J.Jbi.2012.05.003  0.315
2012 Regan K, Wang K, Doughty E, Li H, Li J, Lee Y, Kann MG, Lussier YA. Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. Journal of the American Medical Informatics Association : Jamia. 19: 306-16. PMID 22319180 DOI: 10.1136/Amiajnl-2011-000656  0.333
2012 Peterson TA, Nehrt NL, Park D, Kann MG. Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer. Journal of the American Medical Informatics Association : Jamia. 19: 275-83. PMID 22319177 DOI: 10.1136/Amiajnl-2011-000655  0.45
2012 Capriotti E, Nehrt NL, Kann MG, Bromberg Y. Bioinformatics for personal genome interpretation. Briefings in Bioinformatics. 13: 495-512. PMID 22247263 DOI: 10.1093/Bib/Bbr070  0.38
2011 Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, Kann MG. Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. Bioinformatics (Oxford, England). 27: 408-15. PMID 21138947 DOI: 10.1093/Bioinformatics/Btq667  0.389
2011 Nehrt NL, Peterson TA, Kann MG. Clustering disease connections using DMDM: Domain Mapping of Disease Mutations F1000research. 2. DOI: 10.7490/F1000Research.2001.1  0.312
2010 Peterson TA, Adadey A, Santana-Cruz I, Sun Y, Winder A, Kann MG. DMDM: domain mapping of disease mutations. Bioinformatics (Oxford, England). 26: 2458-9. PMID 20685956 DOI: 10.1093/Bioinformatics/Btq447  0.419
2010 Carroll HD, Kann MG, Sheetlin SL, Spouge JL. Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics. Bioinformatics (Oxford, England). 26: 1708-13. PMID 20505002 DOI: 10.1093/Bioinformatics/Btq270  0.302
2010 Mort M, Evani US, Krishnan VG, Kamati KK, Baenziger PH, Bagchi A, Peters BJ, Sathyesh R, Li B, Sun Y, Xue B, Shah NH, Kann MG, Cooper DN, Radivojac P, et al. In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. Human Mutation. 31: 335-46. PMID 20052762 DOI: 10.1002/Humu.21192  0.432
2010 Kann MG. Advances in translational bioinformatics: computational approaches for the hunting of disease genes. Briefings in Bioinformatics. 11: 96-110. PMID 20007728 DOI: 10.1093/Bib/Bbp048  0.385
2009 Kann MG, Shoemaker BA, Panchenko AR, Przytycka TM. Correlated evolution of interacting proteins: looking behind the mirrortree. Journal of Molecular Biology. 385: 91-8. PMID 18930732 DOI: 10.1016/J.Jmb.2008.09.078  0.374
2008 Singh A, Olowoyeye A, Baenziger PH, Dantzer J, Kann MG, Radivojac P, Heiland R, Mooney SD. MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Research. 36: D815-9. PMID 17827212 DOI: 10.1093/Nar/Gkm659  0.348
2007 Kann MG. Protein interactions and disease: computational approaches to uncover the etiology of diseases. Briefings in Bioinformatics. 8: 333-46. PMID 17638813 DOI: 10.1093/Bib/Bbm031  0.452
2007 Kann MG, Sheetlin SL, Park Y, Bryant SH, Spouge JL. The identification of complete domains within protein sequences using accurate E-values for semi-global alignment. Nucleic Acids Research. 35: 4678-85. PMID 17596268 DOI: 10.1093/Nar/Gkm414  0.408
2007 Kann MG, Jothi R, Cherukuri PF, Przytycka TM. Predicting protein domain interactions from coevolution of conserved regions. Proteins. 67: 811-20. PMID 17357158 DOI: 10.1002/Prot.21347  0.443
2005 Jothi R, Kann MG, Przytycka TM. Predicting protein-protein interaction by searching evolutionary tree automorphism space. Bioinformatics (Oxford, England). 21: i241-50. PMID 15961463 DOI: 10.1093/Bioinformatics/Bti1009  0.4
2005 Kann MG, Thiessen PA, Panchenko AR, Schäffer AA, Altschul SF, Bryant SH. A structure-based method for protein sequence alignment. Bioinformatics (Oxford, England). 21: 1451-6. PMID 15613392 DOI: 10.1093/Bioinformatics/Bti233  0.421
2002 Kann MG, Goldstein RA. Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison. Proteins. 48: 367-76. PMID 12112703 DOI: 10.1002/Prot.10117  0.491
2000 Kann M, Qian B, Goldstein RA. Optimization of a new score function for the detection of remote homologs Proteins: Structure, Function and Genetics. 41: 498-503. PMID 11056037 DOI: 10.1002/1097-0134(20001201)41:4<498::Aid-Prot70>3.0.Co;2-3  0.587
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