David K. Gifford - Publications

Affiliations: 
Department of Electrical Engineering Stanford University, Palo Alto, CA 

76 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Louie W, Shen MW, Tahiry Z, Zhang S, Worstell D, Cassa CA, Sherwood RI, Gifford DK. Machine learning based CRISPR gRNA design for therapeutic exon skipping. Plos Computational Biology. 17: e1008605. PMID 33417623 DOI: 10.1371/journal.pcbi.1008605  0.4
2020 Sreekanth V, Zhou Q, Kokkonda P, Bermudez-Cabrera HC, Lim D, Law BK, Holmes BR, Chaudhary SK, Pergu R, Leger BS, Walker JA, Gifford DK, Sherwood RI, Choudhary A. Chemogenetic System Demonstrates That Cas9 Longevity Impacts Genome Editing Outcomes. Acs Central Science. 6: 2228-2237. PMID 33376784 DOI: 10.1021/acscentsci.0c00129  0.4
2020 Lin L, Holmes B, Shen MW, Kammeron D, Geijsen N, Gifford DK, Sherwood RI. Comprehensive Mapping of Key Regulatory Networks that Drive Oncogene Expression. Cell Reports. 33: 108426. PMID 33238122 DOI: 10.1016/j.celrep.2020.108426  0.4
2020 Hammelman J, Krismer K, Banerjee B, Gifford DK, Sherwood RI. Identification of determinants of differential chromatin accessibility through a massively parallel genome-integrated reporter assay. Genome Research. PMID 32973041 DOI: 10.1101/gr.263228.120  0.4
2020 Yeo GHT, Lin L, Qi CY, Cha M, Gifford DK, Sherwood RI. A Multiplexed Barcodelet Single-Cell RNA-Seq Approach Elucidates Combinatorial Signaling Pathways that Drive ESC Differentiation. Cell Stem Cell. PMID 32459995 DOI: 10.1016/J.Stem.2020.04.020  0.4
2019 Shen MW, Arbab M, Hsu JY, Worstell D, Culbertson SJ, Krabbe O, Cassa CA, Liu DR, Gifford DK, Sherwood RI. Author Correction: Predictable and precise template-free CRISPR editing of pathogenic variants. Nature. PMID 30765887 DOI: 10.1038/S41586-019-0938-4  0.4
2018 Shen MW, Arbab M, Hsu JY, Worstell D, Culbertson SJ, Krabbe O, Cassa CA, Liu DR, Gifford DK, Sherwood RI. Predictable and precise template-free CRISPR editing of pathogenic variants. Nature. PMID 30405244 DOI: 10.1038/S41586-018-0686-X  0.4
2017 Kang D, Sherwood R, Barkal A, Hashimoto T, Engstrom L, Gifford D. DNase-capture reveals differential transcription factor binding modalities. Plos One. 12: e0187046. PMID 29284001 DOI: 10.1371/Journal.Pone.0187046  0.4
2017 Zeng H, Edwards MD, Guo Y, Gifford DK. Accurate eQTL prioritization with an ensemble-based framework. Human Mutation. PMID 28224684 DOI: 10.1002/humu.23198  0.44
2017 Kreimer A, Zeng H, Edwards MD, Guo Y, Tian K, Shin S, Welch R, Wainberg M, Mohan R, Sinnott-Armstrong NA, Li Y, Eraslan G, Amin TB, Goke J, Mueller NS, ... ... Gifford DK, et al. Predicting gene expression in massively parallel reporter assays: a comparative study. Human Mutation. PMID 28220625 DOI: 10.1002/Humu.23197  0.44
2016 Hashimoto TB, Sherwood R, Kang DD, Rajagopal N, Barkal AA, Zeng H, Emons BJ, Srinivasan S, Jaakkola T, Gifford D. A synergistic DNA logic predicts genome-wide chromatin accessibility. Genome Research. PMID 27456004 DOI: 10.1101/Gr.199778.115  0.4
2016 Zeng H, Edwards MD, Liu G, Gifford DK. Convolutional neural network architectures for predicting DNA-protein binding. Bioinformatics (Oxford, England). 32: i121-i127. PMID 27307608 DOI: 10.1093/bioinformatics/btw255  0.44
2016 Ferreira LM, Meissner TB, Mikkelsen TS, Mallard W, O'Donnell CW, Tilburgs T, Gomes HA, Camahort R, Sherwood RI, Gifford DK, Rinn JL, Cowan CA, Strominger JL. A distant trophoblast-specific enhancer controls HLA-G expression at the maternal-fetal interface. Proceedings of the National Academy of Sciences of the United States of America. PMID 27078102 DOI: 10.1073/Pnas.1602886113  0.4
2016 Barkal AA, Srinivasan S, Hashimoto T, Gifford DK, Sherwood RI. Cas9 Functionally Opens Chromatin. Plos One. 11: e0152683. PMID 27031353 DOI: 10.1371/Journal.Pone.0152683  0.4
2016 Rajagopal N, Srinivasan S, Kooshesh K, Guo Y, Edwards MD, Banerjee B, Syed T, Emons BJ, Gifford DK, Sherwood RI. High-throughput mapping of regulatory DNA. Nature Biotechnology. PMID 26807528 DOI: 10.1038/nbt.3468  1
2015 Zeng H, Hashimoto T, Kang DD, Gifford DK. GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding. Bioinformatics (Oxford, England). PMID 26476779 DOI: 10.1093/bioinformatics/btv565  1
2015 Reeder C, Closser M, Poh HM, Sandhu K, Wichterle H, Gifford D. High resolution mapping of enhancer-promoter interactions. Plos One. 10: e0122420. PMID 25970635 DOI: 10.1371/Journal.Pone.0122420  1
2014 Li W, Cavelti-Weder C, Zhang Y, Clement K, Donovan S, Gonzalez G, Zhu J, Stemann M, Xu K, Hashimoto T, Yamada T, Nakanishi M, Zhang Y, Zeng S, Gifford D, et al. Long-term persistence and development of induced pancreatic beta cells generated by lineage conversion of acinar cells. Nature Biotechnology. 32: 1223-30. PMID 25402613 DOI: 10.1038/Nbt.3082  0.4
2014 Lodato S, Molyneaux BJ, Zuccaro E, Goff LA, Chen HH, Yuan W, Meleski A, Takahashi E, Mahony S, Rinn JL, Gifford DK, Arlotta P. Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons. Nature Neuroscience. 17: 1046-54. PMID 24997765 DOI: 10.1038/Nn.3757  1
2014 Edwards MD, Symbor-Nagrabska A, Dollard L, Gifford DK, Fink GR. Interactions between chromosomal and nonchromosomal elements reveal missing heritability. Proceedings of the National Academy of Sciences of the United States of America. 111: 7719-22. PMID 24825890 DOI: 10.1073/Pnas.1407126111  1
2014 Mahony S, Edwards MD, Mazzoni EO, Sherwood RI, Kakumanu A, Morrison CA, Wichterle H, Gifford DK. An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding. Plos Computational Biology. 10: e1003501. PMID 24675637 DOI: 10.1371/Journal.Pcbi.1003501  1
2014 Hashimoto TB, Edwards MD, Gifford DK. Universal count correction for high-throughput sequencing. Plos Computational Biology. 10: e1003494. PMID 24603409 DOI: 10.1371/journal.pcbi.1003494  0.44
2014 Hrvatin S, Deng F, O'Donnell CW, Gifford DK, Melton DA. MARIS: method for analyzing RNA following intracellular sorting. Plos One. 9: e89459. PMID 24594682 DOI: 10.1371/Journal.Pone.0089459  1
2014 Hrvatin S, O'Donnell CW, Deng F, Millman JR, Pagliuca FW, DiIorio P, Rezania A, Gifford DK, Melton DA. Differentiated human stem cells resemble fetal, not adult, β cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 3038-43. PMID 24516164 DOI: 10.1073/Pnas.1400709111  1
2014 Sherwood RI, Hashimoto T, O'Donnell CW, Lewis S, Barkal AA, van Hoff JP, Karun V, Jaakkola T, Gifford DK. Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nature Biotechnology. 32: 171-8. PMID 24441470 DOI: 10.1038/Nbt.2798  1
2013 Paik EJ, Mahony S, White RM, Price EN, Dibiase A, Dorjsuren B, Mosimann C, Davidson AJ, Gifford D, Zon LI. A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis. Stem Cell Reports. 1: 425-36. PMID 24286030 DOI: 10.1016/J.Stemcr.2013.10.001  1
2013 Mazzoni EO, Mahony S, Peljto M, Patel T, Thornton SR, McCuine S, Reeder C, Boyer LA, Young RA, Gifford DK, Wichterle H. Saltatory remodeling of Hox chromatin in response to rostrocaudal patterning signals. Nature Neuroscience. 16: 1191-8. PMID 23955559 DOI: 10.1038/Nn.3490  1
2013 Wichterle H, Gifford D, Mazzoni E. Neuroscience. Mapping neuronal diversity one cell at a time. Science (New York, N.Y.). 341: 726-7. PMID 23950522 DOI: 10.1126/Science.1235884  1
2013 Mazzoni EO, Mahony S, Closser M, Morrison CA, Nedelec S, Williams DJ, An D, Gifford DK, Wichterle H. Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity. Nature Neuroscience. 16: 1219-27. PMID 23872598 DOI: 10.1038/Nn.3467  1
2013 Arbab M, Mahony S, Cho H, Chick JM, Rolfe PA, van Hoff JP, Morris VW, Gygi SP, Maas RL, Gifford DK, Sherwood RI. A multi-parametric flow cytometric assay to analyze DNA-protein interactions. Nucleic Acids Research. 41: e38. PMID 23143268 DOI: 10.1093/Nar/Gks1034  0.4
2012 Ryan O, Shapiro RS, Kurat CF, Mayhew D, Baryshnikova A, Chin B, Lin ZY, Cox MJ, Vizeacoumar F, Cheung D, Bahr S, Tsui K, Tebbji F, Sellam A, Istel F, ... ... Gifford DK, et al. Global gene deletion analysis exploring yeast filamentous growth. Science (New York, N.Y.). 337: 1353-6. PMID 22984072 DOI: 10.1126/Science.1224339  1
2012 Rolfe PA, Bernstein DA, Grisafi P, Fink GR, Gifford DK. Ruler arrays reveal haploid genomic structural variation. Plos One. 7: e43210. PMID 22952647 DOI: 10.1371/Journal.Pone.0043210  1
2012 Hashimoto T, Jaakkola T, Sherwood R, Mazzoni EO, Wichterle H, Gifford D. Lineage-based identification of cellular states and expression programs. Bioinformatics (Oxford, England). 28: i250-7. PMID 22689769 DOI: 10.1093/Bioinformatics/Bts204  1
2012 Edwards MD, Gifford DK. High-resolution genetic mapping with pooled sequencing. Bmc Bioinformatics. 13: S8. PMID 22537047 DOI: 10.1186/1471-2105-13-S6-S8  0.44
2011 Mazzoni EO, Mahony S, Iacovino M, Morrison CA, Mountoufaris G, Closser M, Whyte WA, Young RA, Kyba M, Gifford DK, Wichterle H. Embryonic stem cell-based mapping of developmental transcriptional programs. Nature Methods. 8: 1056-8. PMID 22081127 DOI: 10.1038/Nmeth.1775  1
2011 Danford T, Dowell R, Agarwala S, Grisafi P, Fink G, Gifford D. Discovering regulatory overlapping RNA transcripts. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 295-303. PMID 21385035 DOI: 10.1089/Cmb.2010.0267  1
2011 Mahony S, Mazzoni EO, McCuine S, Young RA, Wichterle H, Gifford DK. Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis. Genome Biology. 12: R2. PMID 21232103 DOI: 10.1186/Gb-2011-12-1-R2  1
2010 Wu CY, Rolfe PA, Gifford DK, Fink GR. Control of transcription by cell size. Plos Biology. 8: e1000523. PMID 21072241 DOI: 10.1371/Journal.Pbio.1000523  1
2010 Williams AL, Housman DE, Rinard MC, Gifford DK. Rapid haplotype inference for nuclear families. Genome Biology. 11: R108. PMID 21034477 DOI: 10.1186/Gb-2010-11-10-R108  1
2010 Guo Y, Papachristoudis G, Altshuler RC, Gerber GK, Jaakkola TS, Gifford DK, Mahony S. Discovering homotypic binding events at high spatial resolution. Bioinformatics (Oxford, England). 26: 3028-34. PMID 20966006 DOI: 10.1093/Bioinformatics/Btq590  1
2010 Jung H, Lacombe J, Mazzoni EO, Liem KF, Grinstein J, Mahony S, Mukhopadhyay D, Gifford DK, Young RA, Anderson KV, Wichterle H, Dasen JS. Global control of motor neuron topography mediated by the repressive actions of a single hox gene. Neuron. 67: 781-96. PMID 20826310 DOI: 10.1016/J.Neuron.2010.08.008  1
2010 Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, Bernstein DA, Rolfe PA, Heisler LE, Chin B, Nislow C, Giaever G, Phillips PC, Fink GR, Gifford DK, et al. Genotype to phenotype: a complex problem. Science (New York, N.Y.). 328: 469. PMID 20413493 DOI: 10.1126/Science.1189015  1
2010 Wolf JJ, Dowell RD, Mahony S, Rabani M, Gifford DK, Fink GR. Feed-forward regulation of a cell fate determinant by an RNA-binding protein generates asymmetry in yeast. Genetics. 185: 513-22. PMID 20382833 DOI: 10.1534/Genetics.110.113944  1
2009 Bumgarner SL, Dowell RD, Grisafi P, Gifford DK, Fink GR. Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Proceedings of the National Academy of Sciences of the United States of America. 106: 18321-6. PMID 19805129 DOI: 10.1073/Pnas.0909641106  1
2008 Mathur D, Danford TW, Boyer LA, Young RA, Gifford DK, Jaenisch R. Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET. Genome Biology. 9: R126. PMID 18700969 DOI: 10.1186/Gb-2008-9-8-R126  1
2007 Gerber GK, Dowell RD, Jaakkola TS, Gifford DK. Automated discovery of functional generality of human gene expression programs. Plos Computational Biology. 3: e148. PMID 17696603 DOI: 10.1371/journal.pcbi.0030148  1
2007 Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nature Genetics. 39: 730-2. PMID 17529977 DOI: 10.1038/Ng2047  0.68
2006 Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. High-resolution computational models of genome binding events. Nature Biotechnology. 24: 963-70. PMID 16900145 DOI: 10.1038/Nbt1233  1
2006 Qi Y, Missiuro PE, Kapoor A, Hunter CP, Jaakkola TS, Gifford DK, Ge H. Semi-supervised analysis of gene expression profiles for lineage-specific development in the Caenorhabditis elegans embryo. Bioinformatics (Oxford, England). 22: e417-23. PMID 16873502 DOI: 10.1093/bioinformatics/btl256  1
2006 Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA. Core transcriptional regulatory circuitry in human hepatocytes. Molecular Systems Biology. 2: 2006.0017. PMID 16738562 DOI: 10.1038/Msb4100059  1
2006 Lee TI, Jenner RG, Boyer LA, Guenther MG, Levine SS, Kumar RM, Chevalier B, Johnstone SE, Cole MF, Isono K, Koseki H, Fuchikami T, Abe K, Murray HL, Zucker JP, ... ... Gifford DK, et al. Control of developmental regulators by Polycomb in human embryonic stem cells. Cell. 125: 301-13. PMID 16630818 DOI: 10.1016/J.Cell.2006.02.043  1
2006 Boyer LA, Plath K, Zeitlinger J, Brambrink T, Medeiros LA, Lee TI, Levine SS, Wernig M, Tajonar A, Ray MK, Bell GW, Otte AP, Vidal M, Gifford DK, Young RA, et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature. 441: 349-53. PMID 16625203 DOI: 10.1038/Nature04733  1
2006 Schreiber J, Jenner RG, Murray HL, Gerber GK, Gifford DK, Young RA. Coordinated binding of NF-kappaB family members in the response of human cells to lipopolysaccharide. Proceedings of the National Academy of Sciences of the United States of America. 103: 5899-904. PMID 16595631 DOI: 10.1073/pnas.0510996103  1
2006 MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. Bmc Bioinformatics. 7: 113. PMID 16522208 DOI: 10.1186/1471-2105-7-113  1
2006 Macisaac KD, Gordon DB, Nekludova L, Odom DT, Schreiber J, Gifford DK, Young RA, Fraenkel E. A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data. Bioinformatics (Oxford, England). 22: 423-9. PMID 16332710 DOI: 10.1093/Bioinformatics/Bti815  1
2005 Boyer LA, Lee TI, Cole MF, Johnstone SE, Levine SS, Zucker JP, Guenther MG, Kumar RM, Murray HL, Jenner RG, Gifford DK, Melton DA, Jaenisch R, Young RA. Core transcriptional regulatory circuitry in human embryonic stem cells. Cell. 122: 947-56. PMID 16153702 DOI: 10.1016/J.Cell.2005.08.020  1
2005 Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell. 122: 517-27. PMID 16122420 DOI: 10.1016/J.Cell.2005.06.026  1
2004 Robert F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, Rolfe A, Workman JL, Gifford DK, Young RA. Global position and recruitment of HATs and HDACs in the yeast genome. Molecular Cell. 16: 199-209. PMID 15494307 DOI: 10.1016/J.Molcel.2004.09.021  1
2004 Bar-Joseph Z, Farkash S, Gifford DK, Simon I, Rosenfeld R. Deconvolving cell cycle expression data with complementary information. Bioinformatics (Oxford, England). 20: i23-30. PMID 15262777 DOI: 10.1093/bioinformatics/bth915  1
2004 Odom DT, Zizlsperger N, Gordon DB, Bell GW, Rinaldi NJ, Murray HL, Volkert TL, Schreiber J, Rolfe PA, Gifford DK, Fraenkel E, Bell GI, Young RA. Control of pancreas and liver gene expression by HNF transcription factors. Science (New York, N.Y.). 303: 1378-81. PMID 14988562 DOI: 10.1126/Science.1089769  1
2004 Sachs K, Perez OD, Pe'er D, Nolan GP, Gifford DK, Jaakkola TS, Lauffenburger DA. Analysis of signaling pathways in human T-cells using Bayesian network modeling of single cell data Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 644.  1
2003 Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Computational discovery of gene modules and regulatory networks. Nature Biotechnology. 21: 1337-42. PMID 14555958 DOI: 10.1038/Nbt890  1
2003 Bar-Joseph Z, Gerber GK, Gifford DK, Jaakkola TS, Simon I. Continuous representations of time-series gene expression data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 341-56. PMID 12935332 DOI: 10.1089/10665270360688057  1
2003 Bar-Joseph Z, Gerber G, Simon I, Gifford DK, Jaakkola TS. Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes. Proceedings of the National Academy of Sciences of the United States of America. 100: 10146-51. PMID 12934016 DOI: 10.1073/Pnas.1732547100  1
2003 Bar-Joseph Z, Demaine ED, Gifford DK, Srebro N, Hamel AM, Jaakkola TS. K-ary clustering with optimal leaf ordering for gene expression data. Bioinformatics (Oxford, England). 19: 1070-8. PMID 12801867 DOI: 10.1093/Bioinformatics/Btg030  1
2002 Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, ... ... Gifford DK, et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (New York, N.Y.). 298: 799-804. PMID 12399584 DOI: 10.1126/Science.1075090  1
2002 Sachs K, Gifford D, Jaakkola T, Sorger P, Lauffenburger DA. Bayesian network approach to cell signaling pathway modeling. Science's Stke : Signal Transduction Knowledge Environment. 2002: pe38. PMID 12209052 DOI: 10.1126/Stke.2002.148.Pe38  1
2002 Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Combining location and expression data for principled discovery of genetic regulatory network models. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 437-49. PMID 11928497  1
2002 Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Bayesian methods for elucidating genetic regulatory networks Ieee Intelligent Systems and Their Applications. 17: 37-43. DOI: 10.1109/5254.999218  1
2002 Bar-Joseph Z, Gerber G, Gifford DK, Jaakkola TS, Simon I. A new approach to analyzing gene expression time series data Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 39-48.  1
2001 Simon I, Barnett J, Hannett N, Harbison CT, Rinaldi NJ, Volkert TL, Wyrick JJ, Zeitlinger J, Gifford DK, Jaakkola TS, Young RA. Serial regulation of transcriptional regulators in the yeast cell cycle. Cell. 106: 697-708. PMID 11572776 DOI: 10.1016/S0092-8674(01)00494-9  1
2001 Bar-Joseph Z, Gifford DK, Jaakkola TS. Fast optimal leaf ordering for hierarchical clustering. Bioinformatics (Oxford, England). 17: S22-9. PMID 11472989 DOI: 10.1093/Bioinformatics/17.Suppl_1.S22  1
2001 Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 422-33. PMID 11262961  1
2001 Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Maximum likelihood estimation of optimal scaling factors for expression array normalization Proceedings of Spie - the International Society For Optical Engineering. 4266: 132-140. DOI: 10.1117/12.427981  1
1999 Hartemink AJ, Gifford DK, Khodor J. Automated constraint-based nucleotide sequence selection for DNA computation. Bio Systems. 52: 227-35. PMID 10636048 DOI: 10.1016/S0303-2647(99)00050-7  1
1999 Khodor J, Gifford DK. Design and implementation of computational systems based on programmed mutagenesis. Bio Systems. 52: 93-7. PMID 10636034 DOI: 10.1016/S0303-2647(99)00036-2  0.48
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