Wojciech Rosikiewicz - Publications

Affiliations: 
2020- Center for Applied BioInformatics St. Jude Children's Research Hospital, San Francisco, CA, United States 

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Thomas ME, Qi W, Walsh MP, Ma J, Westover T, Abdelhamed S, Ezzell LJ, Rolle C, Xiong E, Rosikiewicz W, Xu B, Loughran AJ, Pruett-Miller SM, Janke LJ, Klco JM. Functional characterization of cooperating MGA mutations in RUNX1::RUNX1T1 acute myeloid leukemia. Leukemia. PMID 38454121 DOI: 10.1038/s41375-024-02193-y  0.392
2024 Zhang M, Hyle J, Chen X, Xin Y, Jin Y, Zhang J, Yang X, Chen X, Wright S, Liu Z, Rosikiewicz W, Xu B, He L, Liu H, Ping N, et al. RNA-binding protein RBM5 plays an essential role in acute myeloid leukemia by activating the oncogenic protein HOXA9. Genome Biology. 25: 16. PMID 38216972 DOI: 10.1186/s13059-023-03149-8  0.607
2023 Wright S, Zhao X, Rosikiewicz W, Mryncza S, Hyle J, Qi W, Liu Z, Yi S, Cheng Y, Xu B, Li C. Systematic characterization of the HOXA9 downstream targets in MLL-r leukemia by noncoding CRISPR screens. Nature Communications. 14: 7464. PMID 38016946 DOI: 10.1038/s41467-023-43264-5  0.667
2023 Barajas JM, Rasouli M, Umeda M, Hiltenbrand RL, Abdelhamed S, Mohnani R, Arthur B, Westover T, Thomas ME, Ashtiani M, Janke LJ, Xu B, Chang TC, Rosikiewicz W, Xiong E, et al. Acute myeloid leukemias with UBTF tandem duplications are sensitive to Menin inhibitors. Blood. PMID 37890156 DOI: 10.1182/blood.2023021359  0.651
2023 Klco J, Thomas M, Qi W, Walsh M, Ma J, Westover T, Abdelhamed S, Ezzell L, Rolle C, Xiong E, Rosikiewicz W, Xu B, Pruett-Miller S, Loughran A, Janke L. Functional Characterization of Cooperating MGA Mutations in RUNX1::RUNX1T1 Acute Myeloid Leukemia. Research Square. PMID 37790524 DOI: 10.21203/rs.3.rs-3315059/v1  0.654
2023 Wright S, Hu J, Wang H, Hyle J, Zhang Y, Du G, Konopleva MY, Kornblau SM, Djekidel MN, Rosikiewicz W, Xu B, Lu R, Yang JJ, Li C. Interrogating bromodomain inhibitor resistance in KMT2A-rearranged leukemia through combinatorial CRISPR screens. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220134120. PMID 37036970 DOI: 10.1073/pnas.2220134120  0.572
2023 Wang R, Bhatt AB, Minden-Birkenmaier BA, Travis OK, Tiwari S, Jia H, Rosikiewicz W, Martinot O, Childs E, Loesch R, Tossou G, Jamieson S, Finkelstein D, Xu B, Labelle M. ZBTB18 restricts chromatin accessibility and prevents transcriptional adaptations that drive metastasis. Science Advances. 9: eabq3951. PMID 36608120 DOI: 10.1126/sciadv.abq3951  0.626
2022 Wang X, Rosikiewicz W, Sedkov Y, Mondal B, Martinez T, Kallappagoudar S, Tvardovskiy A, Bajpai R, Xu B, Pruett-Miller SM, Schneider R, Herz HM. The MLL3/4 complexes and MiDAC co-regulate H4K20ac to control a specific gene expression program. Life Science Alliance. 5. PMID 35820704 DOI: 10.26508/lsa.202201572  0.63
2022 Qi W, Rosikiewicz W, Yin Z, Xu B, Jiang H, Wan S, Fan Y, Wu G, Wang L. Genomic profiling identifies genes and pathways dysregulated by HEY1-NCOA2 fusion and shines a light on mesenchymal chondrosarcoma tumorigenesis. The Journal of Pathology. PMID 35342947 DOI: 10.1002/path.5899  0.652
2022 Wang X, Rosikiewicz W, Sedkov Y, Martinez T, Hansen BS, Schreiner P, Christensen J, Xu B, Pruett-Miller SM, Helin K, Herz HM. PROSER1 mediates TET2 O-GlcNAcylation to regulate DNA demethylation on UTX-dependent enhancers and CpG islands. Life Science Alliance. 5. PMID 34667079 DOI: 10.26508/lsa.202101228  0.614
2021 Liu Y, Rosikiewicz W, Pan Z, Jillette N, Wang P, Taghbalout A, Foox J, Mason C, Carroll M, Cheng A, Li S. DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation. Genome Biology. 22: 295. PMID 34663425 DOI: 10.1186/s13059-021-02510-z  0.313
2021 Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Acute depletion of CTCF rewires genome-wide chromatin accessibility. Genome Biology. 22: 244. PMID 34429148 DOI: 10.1186/s13059-021-02466-0  0.607
2021 Djekidel MN, Rosikiewicz W, Peng JC, Kanneganti TD, Hui Y, Jin H, Hedges D, Schreiner P, Fan Y, Wu G, Xu B. CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes. Biorxiv : the Preprint Server For Biology. PMID 34075382 DOI: 10.1101/2021.05.14.444026  0.625
2021 Rosikiewicz W, Sikora J, Skrzypczak T, Kubiak MR, Makałowska I. Promoter switching in response to changing environment and elevated expression of protein-coding genes overlapping at their 5' ends. Scientific Reports. 11: 8984. PMID 33903630 DOI: 10.1038/s41598-021-87970-w  0.678
2020 Rosikiewicz W, Chen X, Dominguez PM, Ghamlouch H, Aoufouchi S, Bernard OA, Melnick A, Li S. TET2 deficiency reprograms the germinal center B cell epigenome and silences genes linked to lymphomagenesis. Science Advances. 6: eaay5872. PMID 32596441 DOI: 10.1126/Sciadv.Aay5872  0.359
2020 Ashoor H, Chen X, Rosikiewicz W, Wang J, Cheng A, Wang P, Ruan Y, Li S. Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data. Nature Communications. 11: 1173. PMID 32127534 DOI: 10.1038/s41467-020-14974-x  0.309
2019 Taghbalout A, Du M, Jillette N, Rosikiewicz W, Rath A, Heinen CD, Li S, Cheng AW. Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways. Nature Communications. 10: 4296. PMID 31541098 DOI: 10.1038/S41467-019-12339-7  0.416
2018 Dominguez PM, Ghamlouch H, Rosikiewicz W, Kumar P, Béguelin W, Fontan L, Rivas MA, Pawlikowska P, Armand M, Mouly E, Torres-Martin M, Doane AS, Calvo Fernandez MT, Durant M, Della-Valle V, et al. TET2 deficiency causes germinal center hyperplasia, impairs plasma cell differentiation and promotes B-cell lymphomagenesis. Cancer Discovery. PMID 30274972 DOI: 10.1158/2159-8290.Cd-18-0657  0.402
2018 Wanowska E, Kubiak MR, Rosikiewicz W, Makałowska I, Szcześniak MW. Natural antisense transcripts in diseases: From modes of action to targeted therapies. Wiley Interdisciplinary Reviews. Rna. 9. PMID 29341438 DOI: 10.1002/wrna.1461  0.645
2018 Rosikiewicz W, Suzuki Y, Makalowska I. OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes. Nucleic Acids Research. 46: D186-D193. PMID 29069459 DOI: 10.1093/nar/gkx948  0.696
2017 Rosikiewicz W, Kabza M, Kosinski JG, Ciomborowska-Basheer J, Kubiak MR, Makalowska I. RetrogeneDB-a database of plant and animal retrocopies. Database : the Journal of Biological Databases and Curation. 2017. PMID 29220443 DOI: 10.1093/database/bax038  0.553
2016 Rosikiewicz W, Makałowska I. Biological functions of natural antisense transcripts. Acta Biochimica Polonica. 63: 665-673. PMID 27770572 DOI: 10.18388/abp.2016_1350  0.67
2016 Szcześniak MW, Rosikiewicz W, Makałowska I. CANTATAdb: A Collection of Plant Long Non-Coding RNAs. Plant & Cell Physiology. 57: e8. PMID 26657895 DOI: 10.1093/pcp/pcv201  0.643
2015 Kabza M, Kubiak MR, Danek A, Rosikiewicz W, Deorowicz S, Polański A, Makałowska I. Inter-population Differences in Retrogene Loss and Expression in Humans. Plos Genetics. 11: e1005579. PMID 26474060 DOI: 10.1371/journal.pgen.1005579  0.642
2013 Ciomborowska J, Rosikiewicz W, Szklarczyk D, Makałowski W, Makałowska I. "Orphan" retrogenes in the human genome. Molecular Biology and Evolution. 30: 384-96. PMID 23066043 DOI: 10.1093/molbev/mss235  0.655
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