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Yuan Liu, Ph.D - Publications

Affiliations: 
Polymer Science and Engineering University of Science and Technology of China, Hefei Shi, Anhui Sheng, China 
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zeng X, Wei T, Wang X, Liu Y, Tan Z, Zhang Y, Feng T, Cheng Y, Wang F, Ma B, Qin W, Gao C, Xiao J, Wang C. Discovery of metal-binding proteins by thermal proteome profiling. Nature Chemical Biology. PMID 38409364 DOI: 10.1038/s41589-024-01563-y  0.471
2023 Wang Q, Wang F, Li R, Wang P, Yuan R, Liu D, Liu Y, Luan Y, Wang C, Dong S. Fine Tuning the Properties of Stapled Peptides by Stereogenic α-Amino Acid Bridges. Chemistry (Weinheim An Der Bergstrasse, Germany). e202203624. PMID 36891840 DOI: 10.1002/chem.202203624  0.419
2023 Cheng Y, Wang H, Xu H, Liu Y, Ma B, Chen X, Zeng X, Wang X, Wang B, Shiau C, Ovchinnikov S, Su XD, Wang C. Co-evolution-based prediction of metal-binding sites in proteomes by machine learning. Nature Chemical Biology. PMID 36593274 DOI: 10.1038/s41589-022-01223-z  0.66
2022 Chen Y, Quan B, Li Y, Liu Y, Qin W, Wang C. Quantitative profiling of PTM stoichiometry by resolvable mass tags. Rsc Chemical Biology. 3: 1320-1324. PMID 36349223 DOI: 10.1039/d2cb00179a  0.449
2022 Liu B, Zhuang S, Tian R, Liu Y, Wang Y, Lei X, Wang C. Chemoproteomic Profiling Reveals the Mechanism of Bile Acid Tolerance in Bacteria. Acs Chemical Biology. PMID 36049085 DOI: 10.1021/acschembio.2c00286  0.45
2022 Chen X, Liu Y, Kong L, Wen Z, Wang W, Wang C. Quantitative Chemoproteomic Profiling of Protein Cross-Links Induced by Methylglyoxal. Acs Chemical Biology. PMID 35797239 DOI: 10.1021/acschembio.2c00017  0.488
2022 Tang H, Jia G, Gao J, Yang F, Tang Z, Liu Y, Wang C. Quantifying Turnover Dynamics of Selenoproteome by Isotopic Perturbation. Analytical Chemistry. PMID 35763570 DOI: 10.1021/acs.analchem.2c00895  0.473
2022 Lai S, Chen Y, Yang F, Xiao W, Liu Y, Wang C. Quantitative Site-Specific Chemoproteomic Profiling of Protein Lipoylation. Journal of the American Chemical Society. PMID 35648456 DOI: 10.1021/jacs.2c01528  0.508
2022 Yang F, Jia G, Guo J, Liu Y, Wang C. Quantitative Chemoproteomic Profiling with Data-Independent Acquisition-Based Mass Spectrometry. Journal of the American Chemical Society. PMID 34986311 DOI: 10.1021/jacs.1c11053  0.489
2021 Gao J, Liu Y, Yang F, Chen X, Cravatt BF, Wang C. CIMAGE2.0: An Expanded Tool for Quantitative Analysis of Activity-Based Protein Profiling (ABPP) Data. Journal of Proteome Research. PMID 34495668 DOI: 10.1021/acs.jproteome.1c00455  0.584
2021 Wang J, Liu Y, Liu Y, Wang C, Chen PR. CAGE-prox: A Unified Approach for Time-Resolved Protein Activation in Living Systems. Current Protocols. 1: e180. PMID 34165886 DOI: 10.1002/cpz1.180  0.504
2021 Zhang Y, Qin W, Liu D, Liu Y, Wang C. Chemoproteomic profiling of itaconations in . Chemical Science. 12: 6059-6063. PMID 33996001 DOI: 10.1039/d1sc00660f  0.501
2020 Chen N, Liu Y, Li Y, Wang C. Chemical proteomic profiling of protein 4'-phosphopantetheinylation in mammalian cells. Angewandte Chemie (International Ed. in English). PMID 32537878 DOI: 10.1002/Anie.202004105  0.56
2020 Qin W, Zhang Y, Tang H, Liu D, Chen Y, Liu Y, Wang C. Chemoproteomic profiling of itaconation by bioorthogonal probes in inflammatory macrophages. Journal of the American Chemical Society. PMID 32496768 DOI: 10.1021/Jacs.9B11962  0.509
2019 Chen Y, Qin W, Li Z, Guo Z, Liu Y, Lan T, Wang C. Site-specific chemoproteomic profiling of targets of glyoxal. Future Medicinal Chemistry. PMID 31663776 DOI: 10.4155/Fmc-2019-0221  0.518
2019 Qin W, Qin K, Zhang Y, Jia W, Chen Y, Cheng B, Peng L, Chen N, Liu Y, Zhou W, Wang YL, Chen X, Wang C. S-glycosylation-based cysteine profiling reveals regulation of glycolysis by itaconate. Nature Chemical Biology. PMID 31332308 DOI: 10.1038/S41589-019-0323-5  0.521
2019 Wang J, Liu Y, Liu Y, Zheng S, Wang X, Zhao J, Yang F, Zhang G, Wang C, Chen PR. Time-resolved protein activation by proximal decaging in living systems. Nature. PMID 31068699 DOI: 10.1038/S41586-019-1188-1  0.547
2019 Chen Y, Liu Y, Hou X, Ye Z, Wang C. Quantitative and site-specific chemoproteomic profiling of targets of acrolein. Chemical Research in Toxicology. PMID 30604966 DOI: 10.1021/Acs.Chemrestox.8B00343  0.543
2019 Liu Y, Wang C. Predicting cracks in metalloproteins Nature Machine Intelligence. 1: 553-554. DOI: 10.1038/S42256-019-0128-Y  0.488
2018 Dai J, Liang K, Zhao S, Jia W, Liu Y, Wu H, Lv J, Cao C, Chen T, Zhuang S, Hou X, Zhou S, Zhang X, Chen XW, Huang Y, et al. Chemoproteomics reveals baicalin activates hepatic CPT1 to ameliorate diet-induced obesity and hepatic steatosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29891721 DOI: 10.1073/Pnas.1801745115  0.488
2018 Chen N, Liu J, Qiao Z, Liu Y, Yang Y, Jiang C, Wang X, Wang C. Chemical proteomic profiling of protein -homocysteinylation with a thioester probe. Chemical Science. 9: 2826-2830. PMID 29732068 DOI: 10.1039/C8Sc00221E  0.554
2018 Chen Y, Liu Y, Lan T, Qin W, Zhu Y, Qin K, Gao J, Wang H, Hou X, Chen N, Friedmann Angeli JP, Conrad M, Wang C. Quantitative Profiling of Protein Carbonylations in Ferroptosis by an Aniline-Derived Probe. Journal of the American Chemical Society. PMID 29569437 DOI: 10.1021/Jacs.8B01462  0.564
2018 Qin W, Qin K, Fan X, Peng L, Hong W, Zhu Y, Lv P, Du Y, Huang R, Han M, Cheng B, Liu Y, Zhou W, Wang C, Chen X. Back Cover: Artificial Cysteine S-Glycosylation Induced by Per-O-Acetylated Unnatural Monosaccharides during Metabolic Glycan Labeling (Angew. Chem. Int. Ed. 7/2018) Angewandte Chemie International Edition. 57: 2006-2006. DOI: 10.1002/Anie.201800116  0.487
2018 Qin W, Qin K, Fan X, Peng L, Hong W, Zhu Y, Lv P, Du Y, Huang R, Han M, Cheng B, Liu Y, Zhou W, Wang C, Chen X. Rücktitelbild: Artificial Cysteine S-Glycosylation Induced by Per-O-Acetylated Unnatural Monosaccharides during Metabolic Glycan Labeling (Angew. Chem. 7/2018) Angewandte Chemie. 130: 2024-2024. DOI: 10.1002/Ange.201800116  0.486
2017 Qin W, Qin K, Fan X, Peng L, Hong W, Zhu Y, Lv P, Du Y, Huang R, Han M, Cheng B, Liu Y, Zhou W, Wang C, Chen X. Artificial Cysteine S-Glycosylation Induced by Per-O-Acetylated Unnatural Monosacharides during Metabolic Glycan Labeling. Angewandte Chemie (International Ed. in English). PMID 29237092 DOI: 10.1002/Anie.201711710  0.506
2017 Wang H, Chen X, Li C, Liu Y, Yang F, Wang C. Sequence-Based Prediction of Cysteine Reactivity Using Machine Learning. Biochemistry. PMID 29072073 DOI: 10.1021/Acs.Biochem.7B00897  0.548
2016 Park H, Bradley P, Greisen P, Liu Y, Mulligan VK, Kim DE, Baker D, DiMaio F. Simultaneous optimization of biomolecular energy function on features from small molecules and macromolecules. Journal of Chemical Theory and Computation. PMID 27766851 DOI: 10.1021/Acs.Jctc.6B00819  0.631
2016 Xu C, Zhang X, Liu X, Liu Y, Hu X, Zhong J, Zhang C, Liu X. Selection and application of broad-specificity human domain antibody for simultaneous detection of Bt Cry toxins. Analytical Biochemistry. PMID 27544649 DOI: 10.1016/j.ab.2016.08.012  0.499
2016 Liu Y, Wang C, He N, Wen X, Gao Y, Li S, Niu S, Butterbach-Bahl K, Luo Y, Yu G. A global synthesis of the rate and temperature sensitivity of soil nitrogen mineralization: latitudinal patterns and mechanisms. Global Change Biology. PMID 27234363 DOI: 10.1111/gcb.13372  0.396
2016 Chen X, Wang C, Guan S, Liu Y, Han L, Cheng Y. Zidovudine, abacavir and lamivudine increase the radiosensitivity of human esophageal squamous cancer cell lines. Oncology Reports. PMID 27220342 DOI: 10.3892/or.2016.4819  0.397
2016 Wang D, Cai D, Wang C, Liu B, Wang L, Liu Y, Li H, Wang Y, Li Q, Wang T. Muti-component nanocomposite of nickel and manganese oxides with enhanced stability and catalytic performance for non-enzymatic glucose sensors. Nanotechnology. 27: 255501. PMID 27181988 DOI: 10.1088/0957-4484/27/25/255501  0.401
2016 Gao J, Xie Y, Jin H, Liu Y, Bai X, Ma D, Zhu Y, Wang C, Guo T. Nitrous Oxide Emission and Denitrifier Abundance in Two Agricultural Soils Amended with Crop Residues and Urea in the North China Plain. Plos One. 11: e0154773. PMID 27152647 DOI: 10.1371/journal.pone.0154773  0.392
2016 Ovchinnikov S, Park H, Kim DE, Liu Y, Yu-Ruei Wang R, Baker D. Structure Prediction using sparse simulated NOE restraints with Rosetta in CASP11. Proteins. PMID 26857542 DOI: 10.1002/Prot.25006  0.665
2015 Ovchinnikov S, Kim DE, Wang RY, Liu Y, DiMaio F, Baker D. Improved de novo structure prediction in CASP11 by incorporating Co-evolution information into rosetta. Proteins. PMID 26677056 DOI: 10.1002/Prot.24974  0.707
2012 Xiao S, Wang L, Liu Y, Lin X, Liang H. Theoretical investigation of the proton transfer mechanism in guanine-cytosine and adenine-thymine base pairs. The Journal of Chemical Physics. 137: 195101. PMID 23181336 DOI: 10.1063/1.4766319  0.51
2012 Liu Y, Kellogg E, Liang H. Canonical and micro-canonical analysis of folding of trpzip2: an all-atom replica exchange Monte Carlo simulation study. The Journal of Chemical Physics. 137: 045103. PMID 22852659 DOI: 10.1063/1.4738760  0.698
2012 Cai L, Liu Y, Liang H. Impact of hydrogen bonding on inclusion layer of urea to cellulose: Study of molecular dynamics simulation Polymer. 53: 1124-1130. DOI: 10.1016/J.Polymer.2012.01.008  0.504
2011 Guo J, Li X, Liu Y, Liang H. Flow-induced translocation of polymers through a fluidic channel: a dissipative particle dynamics simulation study. The Journal of Chemical Physics. 134: 134906. PMID 21476773 DOI: 10.1063/1.3578180  0.509
2009 Wang L, Chen T, Lin X, Liu Y, Liang H. Canonical and microcanonical analysis of nongrafted homopolymer adsorption by an attractive substrate. The Journal of Chemical Physics. 131: 244902. PMID 20059110 DOI: 10.1063/1.3273418  0.507
2009 Chen T, Wang L, Lin X, Liu Y, Liang H. Microcanonical analysis of adsorption of homopolymer chain on a surface. The Journal of Chemical Physics. 130: 244905. PMID 19566179 DOI: 10.1063/1.3157255  0.505
2009 Li X, Liu Y, Wang L, Deng M, Liang H. Fusion and fission pathways of vesicles from amphiphilic triblock copolymers: a dissipative particle dynamics simulation study. Physical Chemistry Chemical Physics : Pccp. 11: 4051-9. PMID 19440635 DOI: 10.1039/B817773B  0.511
2009 Li X, Guo J, Liu Y, Liang H. Microphase separation of diblock copolymer poly(styrene-b-isoprene): A dissipative particle dynamics simulation study. The Journal of Chemical Physics. 130: 074908. PMID 19239317 DOI: 10.1063/1.3077865  0.51
2008 Chen T, Lin X, Liu Y, Lu T, Liang H. Microcanonical analyses of homopolymer aggregation processes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 056101. PMID 19113184 DOI: 10.1103/Physreve.78.056101  0.511
2008 Li X, Deng M, Liu Y, Liang H. Dissipative particle dynamics simulations of toroidal structure formations of amphiphilic triblock copolymers. The Journal of Physical Chemistry. B. 112: 14762-5. PMID 18973360 DOI: 10.1021/Jp803948J  0.51
2007 Chen T, Lin X, Liu Y, Liang H. Microcanonical analysis of association of hydrophobic segments in a heteropolymer. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 046110. PMID 17995063 DOI: 10.1103/Physreve.76.046110  0.511
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