| Year |
Citation |
Score |
| 2023 |
Hibbins MS, Breithaupt LC, Hahn MW. Phylogenomic comparative methods: Accurate evolutionary inferences in the presence of gene tree discordance. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220389120. PMID 37216509 DOI: 10.1073/pnas.2220389120 |
0.4 |
|
| 2023 |
Bertram J, Fulton B, Tourigny JP, Peña-Garcia Y, Moyle LC, Hahn MW. CAGEE: computational analysis of gene expression evolution. Molecular Biology and Evolution. PMID 37158385 DOI: 10.1093/molbev/msad106 |
0.397 |
|
| 2022 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Hahn MW, et al. Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature. PMID 35962045 DOI: 10.1038/s41586-022-04799-7 |
0.695 |
|
| 2021 |
Smith ML, Hahn MW. The Frequency and Topology of Pseudoorthologs. Systematic Biology. PMID 34951639 DOI: 10.1093/sysbio/syab097 |
0.347 |
|
| 2021 |
Hibbins MS, Hahn MW. The effects of introgression across thousands of quantitative traits revealed by gene expression in wild tomatoes. Plos Genetics. 17: e1009892. PMID 34748547 DOI: 10.1371/journal.pgen.1009892 |
0.361 |
|
| 2021 |
Yan Z, Smith ML, Du P, Hahn MW, Nakhleh L. Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs. Systematic Biology. PMID 34245291 DOI: 10.1093/sysbio/syab056 |
0.341 |
|
| 2021 |
Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Hahn MW, et al. Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 34015138 DOI: 10.1093/molbev/msab100 |
0.328 |
|
| 2021 |
Wu M, Haak DC, Anderson GJ, Hahn MW, Moyle LC, Guerrero RF. Inferring the genetic basis of sex determination from the genome of a dioecious nightshade. Molecular Biology and Evolution. PMID 33769517 DOI: 10.1093/molbev/msab089 |
0.426 |
|
| 2020 |
Mendes FK, Vanderpool D, Fulton B, Hahn MW. CAFE 5 models variation in evolutionary rates among gene families. Bioinformatics (Oxford, England). PMID 33325502 DOI: 10.1093/bioinformatics/btaa1022 |
0.798 |
|
| 2020 |
Vanderpool D, Minh BQ, Lanfear R, Hughes D, Murali S, Harris RA, Raveendran M, Muzny DM, Hibbins MS, Williamson RJ, Gibbs RA, Worley KC, Rogers J, Hahn MW. Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression. Plos Biology. 18: e3000954. PMID 33270638 DOI: 10.1371/journal.pbio.3000954 |
0.435 |
|
| 2020 |
Small ST, Labbé F, Lobo NF, Koekemoer LL, Sikaala CH, Neafsey DE, Hahn MW, Fontaine MC, Besansky NJ. Radiation with reticulation marks the origin of a major malaria vector. Proceedings of the National Academy of Sciences of the United States of America. PMID 33262284 DOI: 10.1073/pnas.2018142117 |
0.393 |
|
| 2020 |
Thomas GWC, Wang RJ, Nguyen J, Harris RA, Raveendran M, Rogers J, Hahn MW. Origins and long-term patterns of copy-number variation in rhesus macaques. Molecular Biology and Evolution. PMID 33226085 DOI: 10.1093/molbev/msaa303 |
0.358 |
|
| 2020 |
Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Hahn M, et al. Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 32946576 DOI: 10.1093/Molbev/Msaa240 |
0.538 |
|
| 2020 |
Smith ML, Hahn MW. New Approaches for Inferring Phylogenies in the Presence of Paralogs. Trends in Genetics : Tig. PMID 32921510 DOI: 10.1016/j.tig.2020.08.012 |
0.472 |
|
| 2020 |
Stamboulian M, Guerrero RF, Hahn MW, Radivojac P. The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction. Bioinformatics (Oxford, England). 36: i219-i226. PMID 32657391 DOI: 10.1093/Bioinformatics/Btaa468 |
0.424 |
|
| 2020 |
Wang RJ, Thomas GWC, Raveendran M, Harris RA, Doddapaneni H, Muzny DM, Capitanio JP, Radivojac P, Rogers J, Hahn MW. Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability. Genome Research. PMID 32461224 DOI: 10.1101/Gr.255174.119 |
0.332 |
|
| 2020 |
Minh BQ, Hahn MW, Lanfear R. New methods to calculate concordance factors for phylogenomic datasets. Molecular Biology and Evolution. PMID 32365179 DOI: 10.1093/Molbev/Msaa106 |
0.354 |
|
| 2020 |
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Hahn MW, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7 |
0.492 |
|
| 2020 |
Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, et al. Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Bmc Biology. 18: 1. PMID 31898513 DOI: 10.1186/S12915-019-0728-3 |
0.448 |
|
| 2019 |
Hahn MW, Hibbins MS. A three-sample test for introgression. Molecular Biology and Evolution. PMID 31373630 DOI: 10.1093/molbev/msz178 |
0.342 |
|
| 2019 |
Mendes FK, Livera AP, Hahn MW. The perils of intralocus recombination for inferences of molecular convergence. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180244. PMID 31154973 DOI: 10.1098/rstb.2018.0244 |
0.804 |
|
| 2019 |
Thomas GWC, Hahn MW. Referee: reference assembly quality scores. Genome Biology and Evolution. PMID 31028392 DOI: 10.1093/gbe/evz088 |
0.314 |
|
| 2019 |
Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, ... ... Hahn MW, et al. The comparative genomics and complex population history of baboons. Science Advances. 5: eaau6947. PMID 30854422 DOI: 10.1126/Sciadv.Aau6947 |
0.515 |
|
| 2019 |
Hibbins MS, Hahn MW. The Timing and Direction of Introgression Under the Multispecies Network Coalescent. Genetics. PMID 30670542 DOI: 10.1534/genetics.118.301831 |
0.387 |
|
| 2018 |
Mohammed Ismail W, Pagel KA, Pejaver V, Zhang SV, Casasa S, Mort M, Cooper DN, Hahn MW, Radivojac P. The sequencing and interpretation of the genome obtained from a Serbian individual. Plos One. 13: e0208901. PMID 30566479 DOI: 10.1371/Journal.Pone.0208901 |
0.478 |
|
| 2018 |
Adrion JR, Begun DJ, Hahn MW. Patterns of transposable element variation and clinality in Drosophila. Molecular Ecology. PMID 30484926 DOI: 10.1111/mec.14961 |
0.363 |
|
| 2018 |
Guerrero RF, Hahn MW. Quantifying the risk of hemiplasy in phylogenetic inference. Proceedings of the National Academy of Sciences of the United States of America. PMID 30482861 DOI: 10.1073/pnas.1811268115 |
0.416 |
|
| 2018 |
Rouard M, Droc G, Martin G, Sardos J, Hueber Y, Guignon V, Cenci A, Geigle B, Hibbins MS, Yahiaoui N, Baurens FC, Berry V, Hahn MW, D'Hont A, Roux N. Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana). Genome Biology and Evolution. PMID 30321324 DOI: 10.1093/gbe/evy227 |
0.504 |
|
| 2018 |
Wang RJ, Hahn MW. Speciation genes are more likely to have discordant gene trees. Evolution Letters. 2: 281-296. PMID 30283682 DOI: 10.1002/evl3.77 |
0.369 |
|
| 2018 |
Thomas GWC, Wang RJ, Puri A, Harris RA, Raveendran M, Hughes DST, Murali SC, Williams LE, Doddapaneni H, Muzny DM, Gibbs RA, Abee CR, Galinski MR, Worley KC, Rogers J, ... ... Hahn MW, et al. Reproductive Longevity Predicts Mutation Rates in Primates. Current Biology : Cb. PMID 30270182 DOI: 10.1016/J.Cub.2018.08.050 |
0.341 |
|
| 2018 |
Ayala D, Zhang S, Chateau M, Fouet C, Morlais I, Costantini C, Hahn MW, Besansky N. Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae. Molecular Ecology. PMID 30252170 DOI: 10.1111/Mec.14880 |
0.442 |
|
| 2018 |
Cheng C, Tan JC, Hahn MW, Besansky NJ. Systems genetic analysis of inversion polymorphisms in the malaria mosquito . Proceedings of the National Academy of Sciences of the United States of America. PMID 29987007 DOI: 10.1073/Pnas.1806760115 |
0.364 |
|
| 2018 |
Mendes FK, Fuentes-González JA, Schraiber JG, Hahn MW. A multispecies coalescent model for quantitative traits. Elife. 7. PMID 29969096 DOI: 10.7554/Elife.36482 |
0.776 |
|
| 2018 |
Venkat A, Hahn MW, Thornton JW. Multinucleotide mutations cause false inferences of lineage-specific positive selection. Nature Ecology & Evolution. PMID 29967485 DOI: 10.1038/S41559-018-0584-5 |
0.41 |
|
| 2018 |
Wu M, Kostyun JL, Hahn MW, Moyle LC. Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology. PMID 29953708 DOI: 10.1111/Mec.14780 |
0.494 |
|
| 2018 |
Kern AD, Hahn MW. The neutral theory in light of natural selection. Molecular Biology and Evolution. PMID 29722831 DOI: 10.1093/molbev/msy092 |
0.646 |
|
| 2018 |
Warren WC, García-Pérez R, Xu S, Lampert KP, Chalopin D, Stöck M, Loewe L, Lu Y, Kuderna L, Minx P, Montague MJ, Tomlinson C, Hillier LW, Murphy DN, Wang J, ... ... Hahn MW, et al. Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly. Nature Ecology & Evolution. PMID 29434351 DOI: 10.1038/S41559-018-0473-Y |
0.505 |
|
| 2018 |
Palesch D, Bosinger SE, Tharp GK, Vanderford TH, Paiardini M, Chahroudi A, Johnson ZP, Kirchhoff F, Hahn BH, Norgren RB, Patel NB, Sodora DL, Dawoud RA, Stewart CB, Seepo SM, ... ... Hahn MW, et al. Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host. Nature. 553: 77-81. PMID 29300007 DOI: 10.1038/Nature25140 |
0.418 |
|
| 2017 |
House GL, Hahn MW. Evaluating methods to visualize patterns of genetic differentiation on a landscape. Molecular Ecology Resources. PMID 29282875 DOI: 10.1111/1755-0998.12747 |
0.338 |
|
| 2017 |
Miles A, Harding NJ, Bottà G, Clarkson CS, Antão T, Kozak K, Schrider DR, Kern AD, Redmond S, Sharakhov I, Pearson RD, Bergey C, Fontaine MC, Donnelly MJ, Lawniczak MKN, ... ... Hahn MW, et al. Genetic diversity of the African malaria vector Anopheles gambiae. Nature. 552: 96-100. PMID 29186111 DOI: 10.1038/Nature24995 |
0.817 |
|
| 2017 |
Mendes FK, Hahn MW. Why Concatenation Fails Near the Anomaly Zone. Systematic Biology. PMID 28973673 DOI: 10.1093/sysbio/syx063 |
0.79 |
|
| 2017 |
Guerrero RF, Hahn MW. Speciation as a Sieve for Ancestral Polymorphism. Molecular Ecology. PMID 28792649 DOI: 10.1111/mec.14290 |
0.509 |
|
| 2017 |
Broz AK, Guerrero RF, Randle AM, Baek YS, Hahn MW, Bedinger PA. Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers. Bmc Plant Biology. 17: 81. PMID 28438120 DOI: 10.1186/S12870-017-1032-4 |
0.432 |
|
| 2017 |
Thomas GWC, Ather SH, Hahn MW. Gene-tree reconciliation with MUL-trees to resolve polyploidy events. Systematic Biology. PMID 28419377 DOI: 10.1093/sysbio/syx044 |
0.495 |
|
| 2017 |
Adrion JR, Song MJ, Schrider DR, Hahn MW, Schaack S. Genome-wide estimates of transposable element insertion and deletion rates in Drosophila melanogaster. Genome Biology and Evolution. PMID 28338986 DOI: 10.1093/Gbe/Evx050 |
0.736 |
|
| 2017 |
Roda F, Mendes FK, Hahn MW, Hopkins R. Genomic evidence of gene flow during reinforcement in Texas Phlox. Molecular Ecology. PMID 28141906 DOI: 10.1111/Mec.14041 |
0.812 |
|
| 2017 |
Thomas GW, Hahn MW, Hahn Y. The effects of increasing the number of taxa on inferences of molecular convergence. Genome Biology and Evolution. PMID 28057728 DOI: 10.1093/gbe/evw306 |
0.408 |
|
| 2016 |
Mendes FK, Hahn Y, Hahn MW. Gene tree discordance can generate patterns of diminishing convergence over time. Molecular Biology and Evolution. PMID 27634870 DOI: 10.1093/molbev/msw197 |
0.8 |
|
| 2016 |
Zhang SV, Zhuo L, Hahn MW. AGOUTI: improving genome assembly and annotation using transcriptome data. Gigascience. 5: 31. PMID 27435057 DOI: 10.1186/s13742-016-0136-3 |
0.519 |
|
| 2016 |
Pease JB, Guerrero RF, Sherman NA, Hahn MW, Moyle LC. Molecular mechanisms of postmating prezygotic reproductive isolation uncovered by transcriptome analysis. Molecular Ecology. PMID 27136303 DOI: 10.1111/Mec.13679 |
0.76 |
|
| 2016 |
Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, ... ... Hahn MW, et al. Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035980 DOI: 10.1073/Pnas.1525164113 |
0.47 |
|
| 2016 |
Rosenzweig BK, Pease JB, Besansky NJ, Hahn MW. Powerful methods for detecting introgressed regions from population genomic data. Molecular Ecology. PMID 26945783 DOI: 10.1111/Mec.13610 |
0.796 |
|
| 2016 |
Mendes FK, Hahn MW. Gene tree discordance causes apparent substitution rate variation. Systematic Biology. PMID 26927960 DOI: 10.1093/sysbio/syw018 |
0.807 |
|
| 2016 |
Pease JB, Haak DC, Hahn MW, Moyle LC. Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation. Plos Biology. 14: e1002379. PMID 26871574 DOI: 10.1371/Journal.Pbio.1002379 |
0.767 |
|
| 2016 |
Guerrero RF, Posto AL, Moyle LC, Hahn MW. Genome-wide patterns of regulatory divergence revealed by introgression lines. Evolution; International Journal of Organic Evolution. PMID 26842879 DOI: 10.1111/Evo.12875 |
0.487 |
|
| 2016 |
Schrider DR, Hahn MW, Begun DJ. Parallel evolution of copy-number variation across continents in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26809315 DOI: 10.1093/Molbev/Msw014 |
0.747 |
|
| 2016 |
Wen D, Yu Y, Hahn MW, Nakhleh L. Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis. Molecular Ecology. PMID 26808290 DOI: 10.1111/Mec.13544 |
0.439 |
|
| 2015 |
Mallet J, Besansky N, Hahn MW. How reticulated are species? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26709836 DOI: 10.1002/Bies.201500149 |
0.455 |
|
| 2015 |
Hahn MW, Nakhleh L. Irrational exuberance for resolved species trees. Evolution; International Journal of Organic Evolution. PMID 26639662 DOI: 10.1111/Evo.12832 |
0.453 |
|
| 2015 |
Warren WC, Jasinska AJ, Garcia-Perez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, ... ... Hahn MW, et al. The genome of the vervet (Chlorocebus aethiops sabaeus). Genome Research. PMID 26377836 DOI: 10.1101/Gr.192922.115 |
0.496 |
|
| 2015 |
Cooper BS, Burrus CR, Ji C, Hahn MW, Montooth KL. Similar Efficacies of Selection Shape Mitochondrial and Nuclear Genes in Both Drosophila melanogaster and Homo sapiens. G3 (Bethesda, Md.). 5: 2165-76. PMID 26297726 DOI: 10.1534/G3.114.016493 |
0.408 |
|
| 2015 |
Adrion JR, Hahn MW, Cooper BS. Revisiting classic clines in Drosophila melanogaster in the age of genomics. Trends in Genetics : Tig. PMID 26072452 DOI: 10.1016/J.Tig.2015.05.006 |
0.491 |
|
| 2015 |
Pease JB, Hahn MW. Detection and Polarization of Introgression in a Five-Taxon Phylogeny. Systematic Biology. 64: 651-62. PMID 25888025 DOI: 10.1093/sysbio/syv023 |
0.757 |
|
| 2015 |
Schrider DR, Mendes FK, Hahn MW, Kern AD. Soft shoulders ahead: spurious signatures of soft and partial selective sweeps result from linked hard sweeps. Genetics. 200: 267-84. PMID 25716978 DOI: 10.1534/Genetics.115.174912 |
0.796 |
|
| 2015 |
Thomas GW, Hahn MW. Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals. Molecular Biology and Evolution. 32: 1232-6. PMID 25631926 DOI: 10.1093/molbev/msv013 |
0.475 |
|
| 2015 |
Foote AD, Liu Y, Thomas GW, Vina? T, Alföldi J, Deng J, Dugan S, van Elk CE, Hunter ME, Joshi V, Khan Z, Kovar C, Lee SL, Lindblad-Toh K, Mancia A, ... ... Hahn MW, et al. Convergent evolution of the genomes of marine mammals. Nature Genetics. 47: 272-5. PMID 25621460 DOI: 10.1038/Ng.3198 |
0.492 |
|
| 2015 |
Muir CD, Hahn MW. The limited contribution of reciprocal gene loss to increased speciation rates following whole-genome duplication. The American Naturalist. 185: 70-86. PMID 25560554 DOI: 10.1086/679108 |
0.546 |
|
| 2015 |
Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, ... ... Hahn MW, et al. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.). 347: 1258522. PMID 25554792 DOI: 10.1126/Science.1258522 |
0.74 |
|
| 2015 |
Fontaine MC, Pease JB, Steele A, Waterhouse RM, Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, Kakani E, Mitchell SN, Wu YC, Smith HA, Love RR, Lawniczak MK, ... ... Hahn MW, et al. Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics. Science (New York, N.Y.). 347: 1258524. PMID 25431491 DOI: 10.1126/Science.1258524 |
0.782 |
|
| 2014 |
Denton JF, Lugo-Martinez J, Tucker AE, Schrider DR, Warren WC, Hahn MW. Extensive error in the number of genes inferred from draft genome assemblies. Plos Computational Biology. 10: e1003998. PMID 25474019 DOI: 10.1371/Journal.Pcbi.1003998 |
0.765 |
|
| 2014 |
Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, ... ... Hahn MW, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 17230-5. PMID 25385592 DOI: 10.1073/Pnas.1410083111 |
0.54 |
|
| 2014 |
Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, ... ... Hahn MW, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679 |
0.514 |
|
| 2014 |
Bachtrog D, Mank JE, Peichel CL, Kirkpatrick M, Otto SP, Ashman TL, Hahn MW, Kitano J, Mayrose I, Ming R, Perrin N, Ross L, Valenzuela N, Vamosi JC. Sex determination: why so many ways of doing it? Plos Biology. 12: e1001899. PMID 24983465 DOI: 10.1371/Journal.Pbio.1001899 |
0.338 |
|
| 2014 |
Cruickshank TE, Hahn MW. Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow. Molecular Ecology. 23: 3133-57. PMID 24845075 DOI: 10.1111/mec.12796 |
0.523 |
|
| 2014 |
Cassone BJ, Kamdem C, Cheng C, Tan JC, Hahn MW, Costantini C, Besansky NJ. Gene expression divergence between malaria vector sibling species Anopheles gambiae and An. coluzzii from rural and urban Yaoundé Cameroon. Molecular Ecology. 23: 2242-59. PMID 24673723 DOI: 10.1111/Mec.12733 |
0.493 |
|
| 2014 |
Hahn MW, Zhang SV, Moyle LC. Sequencing, assembling, and correcting draft genomes using recombinant populations. G3 (Bethesda, Md.). 4: 669-79. PMID 24531727 DOI: 10.1534/G3.114.010264 |
0.477 |
|
| 2014 |
Thomas GW, Hahn MW. The human mutation rate is increasing, even as it slows. Molecular Biology and Evolution. 31: 253-7. PMID 24202611 DOI: 10.1093/molbev/mst218 |
0.332 |
|
| 2014 |
Ashman TL, Bachtrog D, Blackmon H, Goldberg EE, Hahn MW, Kirkpatrick M, Kitano J, Mank JE, Mayrose I, Ming R, Otto SP, Peichel CL, Pennell MW, Perrin N, Ross L, et al. Tree of Sex: A database of sexual systems Scientific Data. 1. DOI: 10.1038/Sdata.2014.15 |
0.67 |
|
| 2013 |
Pease JB, Hahn MW. More accurate phylogenies inferred from low-recombination regions in the presence of incomplete lineage sorting. Evolution; International Journal of Organic Evolution. 67: 2376-84. PMID 23888858 DOI: 10.1111/evo.12118 |
0.796 |
|
| 2013 |
Schrider DR, Houle D, Lynch M, Hahn MW. Rates and genomic consequences of spontaneous mutational events in Drosophila melanogaster. Genetics. 194: 937-54. PMID 23733788 DOI: 10.1534/Genetics.113.151670 |
0.711 |
|
| 2013 |
Han MV, Thomas GW, Lugo-Martinez J, Hahn MW. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. Molecular Biology and Evolution. 30: 1987-97. PMID 23709260 DOI: 10.1093/molbev/mst100 |
0.689 |
|
| 2013 |
Neafsey DE, Christophides GK, Collins FH, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Howell PI, Kafatos FC, Lawson D, Muskavitch MA, Waterhouse RM, Williams LJ, Besansky NJ. The evolution of the Anopheles 16 genomes project. G3 (Bethesda, Md.). 3: 1191-4. PMID 23708298 DOI: 10.1534/G3.113.006247 |
0.446 |
|
| 2013 |
Schrider DR, Begun DJ, Hahn MW. Detecting highly differentiated copy-number variants from pooled population sequencing. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 344-55. PMID 23424139 |
0.69 |
|
| 2013 |
Schrider DR, Navarro FC, Galante PA, Parmigiani RB, Camargo AA, Hahn MW, de Souza SJ. Gene copy-number polymorphism caused by retrotransposition in humans. Plos Genetics. 9: e1003242. PMID 23359205 DOI: 10.1371/Journal.Pgen.1003242 |
0.784 |
|
| 2012 |
Casola C, Conant GC, Hahn MW. Very low rate of gene conversion in the yeast genome. Molecular Biology and Evolution. 29: 3817-26. PMID 22844073 DOI: 10.1093/molbev/mss192 |
0.531 |
|
| 2012 |
Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, ... ... Hahn MW, et al. Genomic variation in natural populations of Drosophila melanogaster. Genetics. 192: 533-98. PMID 22673804 DOI: 10.1534/Genetics.112.142018 |
0.831 |
|
| 2012 |
Hahn MW, Scheuerl T, Jezberová J, Koll U, Jezbera J, Šimek K, Vannini C, Petroni G, Wu QL. The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living polynucleobacter population. Plos One. 7: e32772. PMID 22448227 DOI: 10.1371/journal.pone.0032772 |
0.304 |
|
| 2012 |
Pease JB, Hahn MW. Sex chromosomes evolved from independent ancestral linkage groups in winged insects. Molecular Biology and Evolution. 29: 1645-53. PMID 22319158 DOI: 10.1093/molbev/mss010 |
0.756 |
|
| 2012 |
Cheng C, White BJ, Kamdem C, Mockaitis K, Costantini C, Hahn MW, Besansky NJ. Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach. Genetics. 190: 1417-32. PMID 22209907 DOI: 10.1534/Genetics.111.137794 |
0.532 |
|
| 2012 |
Hahn MW, White BJ, Muir CD, Besansky NJ. No evidence for biased co-transmission of speciation islands in Anopheles gambiae. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 374-84. PMID 22201167 DOI: 10.1098/Rstb.2011.0188 |
0.452 |
|
| 2012 |
Han MV, Hahn MW. Inferring the history of interchromosomal gene transposition in Drosophila using n-dimensional parsimony. Genetics. 190: 813-25. PMID 22095076 DOI: 10.1534/genetics.111.135947 |
0.712 |
|
| 2012 |
Casola C, Zekonyte U, Phillips AD, Cooper DN, Hahn MW. IntErlocus gene conversion events introduce deleterious mutations into at least 1% of human genes associated with inherited disease Genome Research. 22: 429-435. PMID 22090377 DOI: 10.1101/Gr.127738.111 |
0.42 |
|
| 2011 |
Schrider DR, Stevens K, Cardeño CM, Langley CH, Hahn MW. Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster. Genome Research. 21: 2087-95. PMID 22135405 DOI: 10.1101/Gr.116434.110 |
0.78 |
|
| 2011 |
Toups MA, Pease JB, Hahn MW. No excess gene movement is detected off the avian or lepidopteran Z chromosome. Genome Biology and Evolution. 3: 1381-90. PMID 22024813 DOI: 10.1093/gbe/evr109 |
0.752 |
|
| 2011 |
Schrider DR, Gout JF, Hahn MW. Very few RNA and DNA sequence differences in the human transcriptome. Plos One. 6: e25842. PMID 22022455 DOI: 10.1371/Journal.Pone.0025842 |
0.689 |
|
| 2011 |
Nehrt NL, Clark WT, Radivojac P, Hahn MW. Testing the ortholog conjecture with comparative functional genomic data from mammals. Plos Computational Biology. 7: e1002073. PMID 21695233 DOI: 10.1371/Journal.Pcbi.1002073 |
0.467 |
|
| 2011 |
Schrider DR, Hourmozdi JN, Hahn MW. Pervasive multinucleotide mutational events in eukaryotes. Current Biology : Cb. 21: 1051-4. PMID 21636278 DOI: 10.1016/J.Cub.2011.05.013 |
0.691 |
|
| 2011 |
Cassone BJ, Molloy MJ, Cheng C, Tan JC, Hahn MW, Besansky NJ. Divergent transcriptional response to thermal stress by Anopheles gambiae larvae carrying alternative arrangements of inversion 2La. Molecular Ecology. 20: 2567-80. PMID 21535279 DOI: 10.1111/J.1365-294X.2011.05114.X |
0.332 |
|
| 2011 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Hahn MW, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687 |
0.77 |
|
| 2010 |
Kostka D, Hahn MW, Pollard KS. Noncoding sequences near duplicated genes evolve rapidly Genome Biology and Evolution. 2: 518-533. PMID 20660939 DOI: 10.1093/Gbe/Evq037 |
0.545 |
|
| 2010 |
Toups MA, Hahn MW. Retrogenes reveal the direction of sex-chromosome evolution in mosquitoes. Genetics. 186: 763-6. PMID 20660646 DOI: 10.1534/genetics.110.118794 |
0.337 |
|
| 2010 |
Schrider DR, Hahn MW. Gene copy-number polymorphism in nature. Proceedings. Biological Sciences / the Royal Society. 277: 3213-21. PMID 20591863 DOI: 10.1098/Rspb.2010.1180 |
0.776 |
|
| 2010 |
Turner TL, Hahn MW. Genomic islands of speciation or genomic islands and speciation? Molecular Ecology. 19: 848-50. PMID 20456221 DOI: 10.1111/J.1365-294X.2010.04532.X |
0.507 |
|
| 2010 |
Moyle LC, Muir CD, Han MV, Hahn MW. The contribution of gene movement to the "two rules of speciation". Evolution; International Journal of Organic Evolution. 64: 1541-57. PMID 20298429 DOI: 10.1111/J.1558-5646.2010.00990.X |
0.681 |
|
| 2010 |
Casola C, Ganote CL, Hahn MW. Nonallelic gene conversion in the genus Drosophila. Genetics. 185: 95-103. PMID 20215470 DOI: 10.1534/Genetics.110.115444 |
0.491 |
|
| 2010 |
Schrider DR, Hahn MW. Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplications. Molecular Biology and Evolution. 27: 103-11. PMID 19745000 DOI: 10.1093/Molbev/Msp210 |
0.719 |
|
| 2009 |
Meisel RP, Han MV, Hahn MW. A complex suite of forces drives gene traffic from Drosophila X chromosomes. Genome Biology and Evolution. 1: 176-88. PMID 20333188 DOI: 10.1093/Gbe/Evp018 |
0.795 |
|
| 2009 |
Schrider DR, Costello JC, Hahn MW. All human-specific gene losses are present in the genome as pseudogenes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1419-27. PMID 19754271 DOI: 10.1089/Cmb.2009.0085 |
0.756 |
|
| 2009 |
Hahn MW. Distinguishing among evolutionary models for the maintenance of gene duplicates. The Journal of Heredity. 100: 605-17. PMID 19596713 DOI: 10.1093/jhered/esp047 |
0.43 |
|
| 2009 |
Casola C, Hahn MW. Gene conversion among paralogs results in moderate false detection of positive selection using likelihood methods. Journal of Molecular Evolution. 68: 679-87. PMID 19471989 DOI: 10.1007/S00239-009-9241-6 |
0.454 |
|
| 2009 |
Han MV, Demuth JP, McGrath CL, Casola C, Hahn MW. Adaptive evolution of young gene duplicates in mammals. Genome Research. 19: 859-67. PMID 19411603 DOI: 10.1101/Gr.085951.108 |
0.802 |
|
| 2009 |
McGrath CL, Casola C, Hahn MW. Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes. Genetics. 182: 615-22. PMID 19307604 DOI: 10.1534/Genetics.109.101428 |
0.509 |
|
| 2009 |
Sharma AK, Sommerfeld K, Bullerjahn GS, Matteson AR, Wilhelm SW, Jezbera J, Brandt U, Doolittle WF, Hahn MW. Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria. The Isme Journal. 3: 726-37. PMID 19242530 DOI: 10.1038/Ismej.2009.13 |
0.319 |
|
| 2009 |
Han MV, Hahn MW. Identifying parent-daughter relationships among duplicated genes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 114-25. PMID 19213133 |
0.656 |
|
| 2009 |
Demuth JP, Hahn MW. The life and death of gene families. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 29-39. PMID 19153999 DOI: 10.1002/Bies.080085 |
0.669 |
|
| 2008 |
Nuzhdin SV, Tufts DM, Hahn MW. Abundant genetic variation in transcript level during early Drosophila development. Evolution & Development. 10: 683-9. PMID 19021738 DOI: 10.1111/J.1525-142X.2008.00281.X |
0.432 |
|
| 2008 |
Li YF, Costello JC, Holloway AK, Hahn MW. "Reverse ecology" and the power of population genomics. Evolution; International Journal of Organic Evolution. 62: 2984-94. PMID 18752601 DOI: 10.1111/J.1558-5646.2008.00486.X |
0.488 |
|
| 2008 |
Cassone BJ, Mouline K, Hahn MW, White BJ, Pombi M, Simard F, Costantini C, Besansky NJ. Differential gene expression in incipient species of Anopheles gambiae. Molecular Ecology. 17: 2491-504. PMID 18430144 DOI: 10.1111/J.1365-294X.2008.03774.X |
0.459 |
|
| 2008 |
Hahn MW. Toward a selection theory of molecular evolution. Evolution; International Journal of Organic Evolution. 62: 255-65. PMID 18302709 DOI: 10.1111/j.1558-5646.2007.00308.x |
0.443 |
|
| 2008 |
Costello JC, Han MV, Hahn MW. Limitations of pseudogenes in identifying gene losses Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 14-25. DOI: 10.1007/978-3-540-87989-3_2 |
0.622 |
|
| 2007 |
White BJ, Hahn MW, Pombi M, Cassone BJ, Lobo NF, Simard F, Besansky NJ. Localization of candidate regions maintaining a common polymorphic inversion (2La) in Anopheles gambiae. Plos Genetics. 3: e217. PMID 18069896 DOI: 10.1371/Journal.Pgen.0030217 |
0.465 |
|
| 2007 |
Hahn MW, Han MV, Han SG. Gene family evolution across 12 Drosophila genomes. Plos Genetics. 3: e197. PMID 17997610 DOI: 10.1371/journal.pgen.0030197 |
0.732 |
|
| 2007 |
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Hodges E, ... ... Hahn MW, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature. 450: 219-32. PMID 17994088 DOI: 10.1038/Nature06340 |
0.714 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Hahn MW, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.745 |
|
| 2007 |
Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biology. 5: e310. PMID 17988176 DOI: 10.1371/Journal.Pbio.0050310 |
0.745 |
|
| 2007 |
Hahn MW, Demuth JP, Han SG. Accelerated rate of gene gain and loss in primates. Genetics. 177: 1941-9. PMID 17947411 DOI: 10.1534/Genetics.107.080077 |
0.686 |
|
| 2007 |
Turner TL, Hahn MW. Locus- and population-specific selection and differentiation between incipient species of Anopheles gambiae. Molecular Biology and Evolution. 24: 2132-8. PMID 17636041 DOI: 10.1093/Molbev/Msm143 |
0.427 |
|
| 2007 |
Hahn MW. Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution. Genome Biology. 8: R141. PMID 17634151 DOI: 10.1186/gb-2007-8-7-r141 |
0.527 |
|
| 2007 |
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247 |
0.793 |
|
| 2007 |
Hahn MW. Detecting natural selection on cis-regulatory DNA. Genetica. 129: 7-18. PMID 16955334 DOI: 10.1007/s10709-006-0029-y |
0.386 |
|
| 2007 |
Bentley RA, Lipo CP, Herzog HA, Hahn MW. Regular rates of popular culture change reflect random copying Evolution and Human Behavior. 28: 151-158. DOI: 10.1016/J.Evolhumbehav.2006.10.002 |
0.333 |
|
| 2006 |
Demuth JP, De Bie T, Stajich JE, Cristianini N, Hahn MW. The evolution of mammalian gene families. Plos One. 1: e85. PMID 17183716 DOI: 10.1371/Journal.Pone.0000085 |
0.69 |
|
| 2006 |
De Bie T, Cristianini N, Demuth JP, Hahn MW. CAFE: a computational tool for the study of gene family evolution. Bioinformatics (Oxford, England). 22: 1269-71. PMID 16543274 DOI: 10.1093/Bioinformatics/Btl097 |
0.615 |
|
| 2006 |
Hahn MW. Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Accurate inference and estimation in population genomics. Molecular Biology and Evolution. 23: 911-8. PMID 16407459 DOI: 10.1093/molbev/msj094 |
0.483 |
|
| 2005 |
Rockman MV, Hahn MW, Soranzo N, Zimprich F, Goldstein DB, Wray GA. Ancient and recent positive selection transformed opioid cis-regulation in humans. Plos Biology. 3: e387. PMID 16274263 DOI: 10.1371/Journal.Pbio.0030387 |
0.363 |
|
| 2005 |
Hahn MW, De Bie T, Stajich JE, Nguyen C, Cristianini N. Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Research. 15: 1153-60. PMID 16077014 DOI: 10.1101/Gr.3567505 |
0.498 |
|
| 2005 |
Turner TL, Hahn MW, Nuzhdin SV. Genomic islands of speciation in Anopheles gambiae. Plos Biology. 3: e285. PMID 16076241 DOI: 10.1371/Journal.Pbio.0030285 |
0.496 |
|
| 2005 |
Hahn MW, Lanzaro GC. Female-biased gene expression in the malaria mosquito Anopheles gambiae. Current Biology : Cb. 15: R192-3. PMID 15797007 DOI: 10.1016/j.cub.2005.03.005 |
0.326 |
|
| 2005 |
Hahn MW, Mezey JG, Begun DJ, Gillespie JH, Kern AD, Langley CH, Moyle LC. Evolutionary genomics: codon bias and selection on single genomes. Nature. 433: E5-6; discussion E7-. PMID 15662370 DOI: 10.1038/Nature03221 |
0.722 |
|
| 2005 |
Hahn MW, Kern AD. Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Molecular Biology and Evolution. 22: 803-6. PMID 15616139 DOI: 10.1093/molbev/msi072 |
0.614 |
|
| 2005 |
Stajich JE, Hahn MW. Disentangling the effects of demography and selection in human history. Molecular Biology and Evolution. 22: 63-73. PMID 15356276 DOI: 10.1093/Molbev/Msh252 |
0.409 |
|
| 2004 |
Herzog HA, Bentley RA, Hahn MW. Random drift and large shifts in popularity of dog breeds. Proceedings. Biological Sciences / the Royal Society. 271: S353-6. PMID 15504016 DOI: 10.1098/rsbl.2004.0185 |
0.316 |
|
| 2004 |
Rockman MV, Hahn MW, Soranzo N, Loisel DA, Goldstein DB, Wray GA. Positive selection on MMP3 regulation has shaped heart disease risk. Current Biology : Cb. 14: 1531-9. PMID 15341739 DOI: 10.1016/J.Cub.2004.08.051 |
0.38 |
|
| 2004 |
Hahn MW, Rockman MV, Soranzo N, Goldstein DB, Wray GA. Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans. Genetics. 167: 867-77. PMID 15238535 DOI: 10.1534/Genetics.103.025726 |
0.365 |
|
| 2003 |
Hahn MW, Bentley RA. Drift as a mechanism for cultural change: an example from baby names. Proceedings. Biological Sciences / the Royal Society. 270: S120-3. PMID 12952655 DOI: 10.1098/rsbl.2003.0045 |
0.314 |
|
| 2003 |
Wray GA, Hahn MW, Abouheif E, Balhoff JP, Pizer M, Rockman MV, Romano LA. The evolution of transcriptional regulation in eukaryotes. Molecular Biology and Evolution. 20: 1377-419. PMID 12777501 DOI: 10.1093/Molbev/Msg140 |
0.426 |
|
| 2003 |
Hahn MW, Stajich JE, Wray GA. The effects of selection against spurious transcription factor binding sites. Molecular Biology and Evolution. 20: 901-6. PMID 12716998 DOI: 10.1093/Molbev/Msg096 |
0.384 |
|
| 2002 |
Tiffin P, Hahn MW. Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis. Journal of Molecular Evolution. 54: 746-53. PMID 12029356 DOI: 10.1007/S00239-001-0074-1 |
0.606 |
|
| 2002 |
Hahn MW, Rausher MD, Cunningham CW. Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7. Genetics. 161: 11-20. PMID 12019219 |
0.557 |
|
| 2002 |
Hahn MW, Wray GA. The g-value paradox. Evolution & Development. 4: 73-5. PMID 12004964 DOI: 10.1046/J.1525-142X.2002.01069.X |
0.465 |
|
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