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David Winkler - Publications

Affiliations: 
CSIRO 
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Zhang Z, Beck MW, Winkler DA, Huang B, Sibanda W, Goyal H. Opening the black box of neural networks: methods for interpreting neural network models in clinical applications. Annals of Translational Medicine. 6: 216. PMID 30023379 DOI: 10.21037/Atm.2018.05.32  0.3
2016 Oksel C, Winkler DA, Ma CY, Wilkins T, Wang XZ. Accurate and interpretable nanoSAR models from genetic programming-based decision tree construction approaches. Nanotoxicology. 1-44. PMID 26956430 DOI: 10.3109/17435390.2016.1161857  0.328
2015 Burden FR, Winkler DA. Relevance Vector Machines: Sparse Classification Methods for QSAR. Journal of Chemical Information and Modeling. 55: 1529-34. PMID 26158341 DOI: 10.1021/acs.jcim.5b00261  0.725
2015 Autefage H, Gentleman E, Littmann E, Hedegaard MA, Von Erlach T, O'Donnell M, Burden FR, Winkler DA, Stevens MM. Sparse feature selection methods identify unexpected global cellular response to strontium-containing materials. Proceedings of the National Academy of Sciences of the United States of America. 112: 4280-5. PMID 25831522 DOI: 10.1073/Pnas.1419799112  0.7
2015 Huh YH, Noh M, Burden FR, Chen JC, Winkler DA, Sherley JL. Sparse feature selection identifies H2A.Z as a novel, pattern-specific biomarker for asymmetrically self-renewing distributed stem cells. Stem Cell Research. 14: 144-54. PMID 25636161 DOI: 10.1016/j.scr.2014.12.007  0.706
2013 Le TC, Mulet X, Burden FR, Winkler DA. Predicting the complex phase behavior of self-assembling drug delivery nanoparticles. Molecular Pharmaceutics. 10: 1368-77. PMID 23464802 DOI: 10.1021/mp3006402  0.699
2012 Epa VC, Burden FR, Tassa C, Weissleder R, Shaw S, Winkler DA. Modeling biological activities of nanoparticles. Nano Letters. 12: 5808-12. PMID 23039907 DOI: 10.1021/Nl303144K  0.712
2012 Winkler DA, Burden FR. Robust, quantitative tools for modelling ex-vivo expansion of haematopoietic stem cells and progenitors. Molecular Biosystems. 8: 913-20. PMID 22282302 DOI: 10.1039/c2mb05439f  0.747
2012 Le T, Epa VC, Burden FR, Winkler DA. Quantitative structure-property relationship modeling of diverse materials properties. Chemical Reviews. 112: 2889-919. PMID 22251444 DOI: 10.1021/cr200066h  0.697
2010 Manallack DT, Burden FR, Winkler DA. Modelling inhalational anaesthetics using bayesian feature selection and QSAR modelling methods. Chemmedchem. 5: 1318-23. PMID 20540061 DOI: 10.1002/cmdc.201000056  0.736
2010 Tarasova A, Burden F, Gasteiger J, Winkler DA. Robust modelling of solubility in supercritical carbon dioxide using Bayesian methods. Journal of Molecular Graphics & Modelling. 28: 593-7. PMID 20060347 DOI: 10.1016/J.Jmgm.2009.12.004  0.738
2009 Winkler DA, Burden FR, Halley JD. Predictive mesoscale network model of cell fate decisions during C. elegans embryogenesis. Artificial Life. 15: 411-21. PMID 19463059 DOI: 10.1162/artl.2009.Winkler.011  0.741
2009 Burden FR, Polley MJ, Winkler DA. Toward novel universal descriptors: charge fingerprints. Journal of Chemical Information and Modeling. 49: 710-5. PMID 19434903 DOI: 10.1021/ci800290h  0.721
2009 Halley JD, Burden FR, Winkler DA. Stem cell decision making and critical-like exploratory networks. Stem Cell Research. 2: 165-77. PMID 19393588 DOI: 10.1016/j.scr.2009.03.001  0.729
2008 Halley JD, Winkler DA, Burden FR. Toward a Rosetta stone for the stem cell genome: stochastic gene expression, network architecture, and external influences. Stem Cell Research. 1: 157-68. PMID 19383397 DOI: 10.1016/j.scr.2008.03.001  0.711
2007 Winkler DA, Burden FR. Nonlinear predictive modeling of MHC class II-peptide binding using Bayesian neural networks. Methods in Molecular Biology (Clifton, N.J.). 409: 365-77. PMID 18450015 DOI: 10.1007/978-1-60327-118-9_27  0.726
2005 Burden FR, Winkler DA. Predictive Bayesian neural network models of MHC class II peptide binding. Journal of Molecular Graphics & Modelling. 23: 481-9. PMID 15878832 DOI: 10.1016/j.jmgm.2005.03.001  0.711
2004 Polley MJ, Winkler DA, Burden FR. Broad-based quantitative structure-activity relationship modeling of potency and selectivity of farnesyltransferase inhibitors using a Bayesian regularized neural network. Journal of Medicinal Chemistry. 47: 6230-8. PMID 15566293 DOI: 10.1021/jm049621j  0.733
2004 Winkler DA, Burden FR. Modelling blood-brain barrier partitioning using Bayesian neural nets. Journal of Molecular Graphics & Modelling. 22: 499-505. PMID 15182809 DOI: 10.1016/j.jmgm.2004.03.010  0.733
2003 Sorich MJ, Miners JO, McKinnon RA, Winkler DA, Burden FR, Smith PA. Comparison of Linear and Nonlinear Classification Algorithms for the Prediction of Drug and Chemical Metabolism by Human UDP-Glucuronosyltransferase Isoforms Journal of Chemical Information and Computer Sciences. 43: 2019-2024. PMID 14632453 DOI: 10.1021/ci034108k  0.732
2002 Winkler DA, Burden FR. Application of neural networks to large dataset QSAR, virtual screening, and library design. Methods in Molecular Biology (Clifton, N.J.). 201: 325-67. PMID 12357937 DOI: 10.1385/1-59259-285-6:325  0.698
2001 Burden FR, Ford MG, Whitley DC, Winkler DA. Use of automatic relevance determination in QSAR studies using Bayesian neural networks. Journal of Chemical Information and Computer Sciences. 40: 1423-30. PMID 11128101 DOI: 10.1021/ci000450a  0.314
2000 Burden FR, Winkler DA. A quantitative structure--activity relationships model for the acute toxicity of substituted benzenes to Tetrahymena pyriformis using Bayesian-regularized neural networks. Chemical Research in Toxicology. 13: 436-40. PMID 10858316 DOI: 10.1021/TX9900627  0.319
1982 Brown R, Godfrey P, Winkler D. Hyperfine interactions in methanimine Australian Journal of Chemistry. 35: 667. DOI: 10.1071/CH9820667  0.426
1982 Brown RD, Godfrey PD, Winkler DA. The Microwave Spectrum Of Hydrogen Cyanide Dimer Cheminform. 13. DOI: 10.1002/Chin.198204044  0.399
1981 Brown RD, Godfrey PD, Winkler DA. Hyperfine interactions in the microwave spectrum of 2-propen-1-Imine (vinylimine) Chemical Physics. 59: 243-247. DOI: 10.1016/0301-0104(81)85167-1  0.407
1981 Brown RD, Godfrey PD, Winkler DA. The microwave spectrum of HCN dimer Journal of Molecular Spectroscopy. 89: 352-355. DOI: 10.1016/0022-2852(81)90029-1  0.406
1980 Brown RD, Godfrey PD, Winkler DA. Detection of the 23–22 emission line of sulphur monoxide and its relevance to magnetic fields in Orion Monthly Notices of the Royal Astronomical Society. 190: 1-6. DOI: 10.1093/Mnras/190.1.1  0.395
1980 Brown R, Godfry P, Winkler D. The microwave spectrum of (Z)-Ethanimine Australian Journal of Chemistry. 33: 1-7. DOI: 10.1071/Ch9800001  0.428
1977 Blackman GL, Brown RD, Godfrey PD, Bassez MP, Ottrey AL, Winkler D, Robinson BJ. Detection of J = 2 -> 1 emission of acetonitrile (CH3CN) in Sgr B2 Monthly Notices of the Royal Astronomical Society. 180: 1P-3P. DOI: 10.1093/MNRAS/180.1.1P  0.389
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