| Year |
Citation |
Score |
| 2023 |
Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8 |
0.343 |
|
| 2021 |
Zhang Q, Wu E, Tang Y, Zhang L, Wang J, Hao Y, Zhang B, Zhou Y, Guo X, Luo J, Cai T, Chen R, Yang F. Deeply Mining a Universe of Peptides Encoded by Long Noncoding RNAs. Molecular & Cellular Proteomics : McP. 100109. PMID 34129944 DOI: 10.1016/j.mcpro.2021.100109 |
0.309 |
|
| 2019 |
Zhang S, Wang Y, Jia L, Wen X, Zhonghua D, Wang C, Hao Y, Yu D, Zhou L, Chen N, Chen J, Chen H, Zhang H, Celik I, Gulsoy G, ... ... Chen R, et al. Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing. Genome Research. PMID 31315906 DOI: 10.1101/Gr.244996.118 |
0.334 |
|
| 2017 |
Fang S, Zhang L, Guo J, Niu Y, Wu Y, Li H, Zhao L, Li X, Teng X, Sun X, Sun L, Zhang MQ, Chen R, Zhao Y. NONCODEV5: a comprehensive annotation database for long non-coding RNAs. Nucleic Acids Research. PMID 29140524 DOI: 10.1093/Nar/Gkx1107 |
0.308 |
|
| 2016 |
Chen X, Hao Y, Cui Y, Fan Z, He S, Luo J, Chen R. LncVar: a database of genetic variation associated with long noncoding genes. Bioinformatics (Oxford, England). PMID 27605101 DOI: 10.1093/Bioinformatics/Btw581 |
0.306 |
|
| 2016 |
Chen J, Liu L, Wei G, Wu W, Luo H, Yuan J, Luo J, Chen R. The long noncoding RNA ASNR regulates degradation of Bcl-2 mRNA through its interaction with AUF1. Scientific Reports. 6: 32189. PMID 27578251 DOI: 10.1038/Srep32189 |
0.3 |
|
| 2016 |
Zhang B, Wang D, Wu J, Tang J, Chen W, Chen X, Zhang D, Deng Y, Guo M, Wang Y, Luo J, Chen R. Expression profiling and functional prediction of long noncoding RNAs in nasopharyngeal nonkeratinizing carcinoma. Discovery Medicine. 21: 239-250. PMID 27232510 |
0.323 |
|
| 2016 |
Zhao Y, Yuan J, Chen R. NONCODEv4: Annotation of Noncoding RNAs with Emphasis on Long Noncoding RNAs. Methods in Molecular Biology (Clifton, N.J.). 1402: 243-54. PMID 26721496 DOI: 10.1007/978-1-4939-3378-5_19 |
0.323 |
|
| 2015 |
Yuan J, Zhang P, Cui Y, Wang J, Skogerbø G, Huang DW, Chen R, He S. Computational identification of piRNA targets on mouse mRNAs. Bioinformatics (Oxford, England). PMID 26677964 DOI: 10.1093/bioinformatics/btv729 |
0.34 |
|
| 2014 |
Luo H, Bu D, Sun L, Chen R, Zhao Y. De novo approach to classify protein-coding and noncoding transcripts based on sequence composition. Methods in Molecular Biology (Clifton, N.J.). 1182: 203-7. PMID 25055913 DOI: 10.1007/978-1-4939-1062-5_18 |
0.305 |
|
| 2014 |
Wang JJ, Cui DY, Xiao T, Sun X, Zhang P, Chen R, He S, Huang DW. The influences of PRG-1 on the expression of small RNAs and mRNAs. Bmc Genomics. 15: 321. PMID 24884413 DOI: 10.1186/1471-2164-15-321 |
0.313 |
|
| 2014 |
Wang Y, Wang X, Deng W, Fan X, Liu TT, He G, Chen R, Terzaghi W, Zhu D, Deng XW. Genomic features and regulatory roles of intermediate-sized non-coding RNAs in Arabidopsis. Molecular Plant. 7: 514-27. PMID 24398630 DOI: 10.1093/mp/sst177 |
0.334 |
|
| 2014 |
Xie C, Yuan J, Li H, Li M, Zhao G, Bu D, Zhu W, Wu W, Chen R, Zhao Y. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Research. 42: D98-103. PMID 24285305 DOI: 10.1093/Nar/Gkt1222 |
0.318 |
|
| 2013 |
Liu T, Ren X, Xiao T, Yang J, Xu X, Dong J, Sun L, Chen R, Jin Q. Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum. Bmc Genomics. 14: 931. PMID 24377353 DOI: 10.1186/1471-2164-14-931 |
0.326 |
|
| 2013 |
Guo X, Gao L, Liao Q, Xiao H, Ma X, Yang X, Luo H, Zhao G, Bu D, Jiao F, Shao Q, Chen R, Zhao Y. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. Nucleic Acids Research. 41: e35. PMID 23132350 DOI: 10.1093/nar/gks967 |
0.306 |
|
| 2013 |
Liu TT, Zhu D, Chen W, Deng W, He H, He G, Bai B, Qi Y, Chen R, Deng XW. A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa. Molecular Plant. 6: 830-46. PMID 22986792 DOI: 10.1093/mp/sss087 |
0.309 |
|
| 2012 |
Sleumer MC, Wei G, Wang Y, Chang H, Xu T, Chen R, Zhang MQ. Regulatory elements of Caenorhabditis elegans ribosomal protein genes. Bmc Genomics. 13: 433. PMID 22928635 DOI: 10.1186/1471-2164-13-433 |
0.3 |
|
| 2012 |
Xiao T, Wang Y, Luo H, Liu L, Wei G, Chen X, Sun Y, Chen X, Skogerbø G, Chen R. A differential sequencing-based analysis of the C. elegans noncoding transcriptome. Rna (New York, N.Y.). 18: 626-39. PMID 22345127 DOI: 10.1261/rna.030965.111 |
0.314 |
|
| 2011 |
Wang Y, Chen J, Wei G, He H, Zhu X, Xiao T, Yuan J, Dong B, He S, Skogerbø G, Chen R. The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression. Nucleic Acids Research. 39: 5203-14. PMID 21378118 DOI: 10.1093/nar/gkr102 |
0.306 |
|
| 2011 |
Li D, Wang Y, Zhang K, Jiao Z, Zhu X, Skogerboe G, Guo X, Chinnusamy V, Bi L, Huang Y, Dong S, Chen R, Kan Y. Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori. Nucleic Acids Research. 39: 3792-805. PMID 21227919 DOI: 10.1093/nar/gkq1317 |
0.322 |
|
| 2009 |
Zhang Y, Wang J, Huang S, Zhu X, Liu J, Yang N, Song D, Wu R, Deng W, Skogerbø G, Wang XJ, Chen R, Zhu D. Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Research. 37: 6562-74. PMID 19720738 DOI: 10.1093/nar/gkp704 |
0.309 |
|
| 2009 |
Tan Y, Zhang B, Wu T, Skogerbø G, Zhu X, Guo X, He S, Chen R. Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells. Bmc Molecular Biology. 10: 12-12. PMID 19232136 DOI: 10.1186/1471-2199-10-12 |
0.342 |
|
| 2007 |
He H, Wang J, Liu T, Liu XS, Li T, Wang Y, Qian Z, Zheng H, Zhu X, Wu T, Shi B, Deng W, Zhou W, Skogerbø G, Chen R. Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray. Genome Research. 17: 1471-7. PMID 17785534 DOI: 10.1101/Gr.6611807 |
0.395 |
|
| 2007 |
Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Deng XW. Global identification and characterization of transcriptionally active regions in the rice genome Plos One. 2. PMID 17372628 DOI: 10.1371/Journal.Pone.0000294 |
0.332 |
|
| 2006 |
He H, Cai L, Skogerbø G, Deng W, Liu T, Zhu X, Wang Y, Jia D, Zhang Z, Tao Y, Zeng H, Aftab MN, Cui Y, Liu G, Chen R. Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray. Nucleic Acids Research. 34: 2976-83. PMID 16738136 DOI: 10.1093/Nar/Gkl371 |
0.302 |
|
| 2006 |
Zhang Y, Sun S, Wu T, Wang J, Liu C, Chen L, Zhu X, Zhao Y, Zhang Z, Shi B, Lu H, Chen R. Identifying Hfq-binding small RNA targets in Escherichia coli. Biochemical and Biophysical Research Communications. 343: 950-5. PMID 16574072 DOI: 10.1016/J.Bbrc.2006.02.196 |
0.328 |
|
| 2006 |
Missal K, Zhu X, Rose D, Deng W, Skogerbø G, Chen R, Stadler PF. Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 379-92. PMID 16425273 DOI: 10.1002/Jez.B.21086 |
0.301 |
|
| 2006 |
Wu T, Wang J, Liu C, Zhang Y, Shi B, Zhu X, Zhang Z, Skogerbø G, Chen L, Lu H, Zhao Y, Chen R. NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. Nucleic Acids Research. 34: D150-2. PMID 16381834 DOI: 10.1093/Nar/Gkj025 |
0.366 |
|
| 2006 |
Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, ... ... Chen R, et al. Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Research. 16: 20-9. PMID 16344563 DOI: 10.1101/gr.4139206 |
0.359 |
|
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