Ioan Andricioaei
Affiliations: | Chemistry | University of California, Irvine, Irvine, CA |
Area:
Theoretical Chemistry and BiophysicsWebsite:
http://www.faculty.uci.edu/profile.cfm?faculty_id=5491Google:
"Ioan Andricioaei"Bio:
http://um2017.org/faculty-history/faculty/ioan-andricioaei
Cross-listing: Chemistry Tree
Parents
Sign in to add mentor| John E. Straub | grad student | 1999 | Boston University (Chemistry Tree) | |
| (Computer methods for enhanced sampling and global minimization for biomolecular systems) | ||||
| Martin Karplus | post-doc | 2003 | Harvard (Chemistry Tree) | |
Children
Sign in to add trainee| Praveen Ranganath Prabhakar | grad student | UC Irvine (Chemistry Tree) | |
| Dhiman Ray | grad student | 2018- | UC Irvine (Chemistry Tree) |
| Aaron T. Frank | grad student | 2011 | UC Irvine (Chemistry Tree) |
| Ahmet Mentes | grad student | 2013 | UC Irvine (Chemistry Tree) |
| Gavin D. Bascom | grad student | 2014 | UC Irvine (Chemistry Tree) |
| Mahua Roy | grad student | 2014 | UC Irvine (Chemistry Tree) |
| Maryna Taranova | grad student | 2014 | UC Irvine (Chemistry Tree) |
| Prasanth P. Jose | post-doc | 2008-2010 | UC Irvine (Chemistry Tree) |
BETA: Related publications
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Publications
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| Mereuta L, Roy M, Asandei A, et al. (2025) Author Correction: Slowing down single-molecule trafficking through a protein nanopore reveals intermediates for peptide translocation. Scientific Reports. 15: 7156 |
| Bogetti AT, Leung JMG, Russo JD, et al. (2023) A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]. Living Journal of Computational Molecular Science. 5 |
| Prabhakar PR, Ray D, Andricioaei I. (2023) Predicting residue cooperativity during protein folding: A combined, molecular dynamics and unsupervised learning approach. The Journal of Chemical Physics. 158: 134108 |
| Stone SE, Ray D, Andricioaei I. (2022) Force-Field-Dependent DNA Breathing Dynamics: A Case Study of Hoogsteen Base Pairing in A6-DNA. Journal of Chemical Information and Modeling |
| Ray D, Quijano RN, Andricioaei I. (2022) Point mutations in SARS-CoV-2 variants induce long-range dynamical perturbations in neutralizing antibodies. Chemical Science. 13: 7224-7239 |
| Ray D, Stone SE, Andricioaei I. (2021) Markovian Weighted Ensemble Milestoning (M-WEM): Long-Time Kinetics from Short Trajectories. Journal of Chemical Theory and Computation |
| Ray D, Le L, Andricioaei I. (2021) Distant residues modulate conformational opening in SARS-CoV-2 spike protein. Proceedings of the National Academy of Sciences of the United States of America. 118 |
| Ray D, Gokey T, Mobley DL, et al. (2020) Kinetics and free energy of ligand dissociation using weighted ensemble milestoning. The Journal of Chemical Physics. 153: 154117 |
| Ray D, Andricioaei I. (2020) Free Energy Landscape and Conformational Kinetics of Hoogsteen Base Pairing in DNA vs. RNA. Biophysical Journal |
| Ray D, Andricioaei I. (2020) Weighted ensemble milestoning (WEM): A combined approach for rare event simulations. The Journal of Chemical Physics. 152: 234114 |