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Ondrej Podlaha, Ph.D. - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
molecular and genomic evolution
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21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Podlaha O, Wu G, Downie B, Ramamurthy R, Gaggar A, Subramanian M, Ye Z, Jiang Z. Genomic modeling of hepatitis B virus integration frequency in the human genome. Plos One. 14: e0220376. PMID 31356634 DOI: 10.1371/Journal.Pone.0220376  0.316
2019 Podlaha O, Gane E, Brunetto M, Fung S, Chuang WL, Pan CQ, Jiang Z, Liu Y, Bhardwaj N, Mukherjee P, Flaherty J, Gaggar A, Subramanian M, Izumi N, Shalimar, et al. Large-scale viral genome analysis identifies novel clinical associations between hepatitis B virus and chronically infected patients. Scientific Reports. 9: 10529. PMID 31324819 DOI: 10.1038/S41598-019-46609-7  0.317
2019 Podlaha O, Wu G, Downie B, Ramamurthy RR, Gaggar A, Subramanian M, Ye Z, Jiang Z. SAT-191-Host genome integration of hepatitis B is prolific and is the primary contributor to viral HBs antigen gene expression Journal of Hepatology. 70: e714. DOI: 10.1016/S0618-8278(19)31426-4  0.348
2018 Podlaha O, Agarwal K, Thompson A, Foster G, Samuel D, Yatsuhashi H, Gaggar A, Kitrinos K, Jiang Z, Tong M, Gane E, Brunetto M. Whole genome viral sequencing reveals subgenotype specific dynamics of antiviral treatment response in HBeAg positive and treatment naive chronic hepatitis B patients Journal of Hepatology. 68: S778-S779. DOI: 10.1016/S0168-8278(18)31824-5  0.307
2017 Podlaha O, Revill P, Bhardwaj N, Zhuo L, Kitrinos K, Gaggar A, Jiang Z, Marcellin P, Locarnini S, Chan HL. Whole-genome deep sequencing of hepatitis B virus in chronic hepatitis B patients reveals single nucleotide variants associated with baseline HBV DNA levels and HBeAg status Journal of Hepatology. 66. DOI: 10.1016/S0168-8278(17)31829-9  0.308
2015 Bainer R, Yui Y, Mumenthaler S, Mallick P, Liu L, Wu H, Podlaha O, Michor F, Liphardt J, Licht J, Weaver V. Abstract PR09: Extracellular stiffness cues drive spatial reorganization of the genome to globally constrain RNA abundance Cancer Research. 75. DOI: 10.1158/1538-7445.Compsysbio-Pr09  0.328
2014 Tong X, Hrycaj S, Podlaha O, Popadic A, Monteiro A. Over-expression of Ultrabithorax alters embryonic body plan and wing patterns in the butterfly Bicyclus anynana. Developmental Biology. 394: 357-66. PMID 25169193 DOI: 10.1016/J.Ydbio.2014.08.020  0.345
2014 Podlaha O, De S, Gonen M, Michor F. Histone modifications are associated with transcript isoform diversity in normal and cancer cells. Plos Computational Biology. 10: e1003611. PMID 24901363 DOI: 10.1371/Journal.Pcbi.1003611  0.384
2014 Bainer R, Yui Y, Mumenthaler S, Mallick P, Podlaha O, Michor F, Liphardt J, Licht J, Weaver V. Abstract 2344: 3D extracellular stiffness cues drive localized changes in gene expression Cancer Research. 74: 2344-2344. DOI: 10.1158/1538-7445.Am2014-2344  0.411
2012 Seher TD, Ng CS, Signor SA, Podlaha O, Barmina O, Kopp A. Genetic basis of a violation of Dollo's Law: re-evolution of rotating sex combs in Drosophila bipectinata. Genetics. 192: 1465-75. PMID 23086218 DOI: 10.1534/Genetics.112.145524  0.365
2012 Podlaha O, Riester M, De S, Michor F. Evolution of the cancer genome. Trends in Genetics : Tig. 28: 155-63. PMID 22342180 DOI: 10.1016/J.Tig.2012.01.003  0.325
2011 Park SH, Podlaha O, Grus WE, Zhang J. The microevolution of V1r vomeronasal receptor genes in mice. Genome Biology and Evolution. 3: 401-12. PMID 21551350 DOI: 10.1093/Gbe/Evr039  0.578
2011 Chen B, Hrycaj S, Schinko JB, Podlaha O, Wimmer EA, Popadić A, Monteiro A. Pogostick: a new versatile piggyBac vector for inducible gene over-expression and down-regulation in emerging model systems. Plos One. 6: e18659. PMID 21533190 DOI: 10.1371/Journal.Pone.0018659  0.345
2009 Podlaha O, Zhang J. Processed pseudogenes: the 'fossilized footprints' of past gene expression. Trends in Genetics : Tig. 25: 429-34. PMID 19796837 DOI: 10.1016/J.Tig.2009.09.002  0.54
2009 Monteiro A, Podlaha O. Wings, horns, and butterfly eyespots: how do complex traits evolve? Plos Biology. 7: e37. PMID 19243218 DOI: 10.1371/Journal.Pbio.1000037  0.386
2006 Podlaha O, Webb DM, Zhang J. Accelerated evolution and loss of a domain of the sperm-egg-binding protein SED1 in ancestral primates. Molecular Biology and Evolution. 23: 1828-31. PMID 16864605 DOI: 10.1093/Molbev/Msl066  0.494
2005 Podlaha O, Webb DM, Tucker PK, Zhang J. Positive selection for indel substitutions in the rodent sperm protein catsper1. Molecular Biology and Evolution. 22: 1845-52. PMID 15930155 DOI: 10.1093/Molbev/Msi178  0.555
2004 Podlaha O, Zhang J. Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice. Molecular Biology and Evolution. 21: 2202-9. PMID 15306660 DOI: 10.1093/Molbev/Msh230  0.532
2004 Zhang J, Wang X, Podlaha O. Testing the chromosomal speciation hypothesis for humans and chimpanzees. Genome Research. 14: 845-51. PMID 15123584 DOI: 10.1101/Gr.1891104  0.497
2003 Podlaha O, Zhang J. Positive selection on protein-length in the evolution of a primate sperm ion channel. Proceedings of the National Academy of Sciences of the United States of America. 100: 12241-6. PMID 14523237 DOI: 10.1073/Pnas.2033555100  0.519
2002 Zhang J, Webb DM, Podlaha O. Accelerated protein evolution and origins of human-specific features: Foxp2 as an example. Genetics. 162: 1825-35. PMID 12524352  0.494
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