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Keith R. Weninger, PhD - Publications

Affiliations: 
Physics North Carolina State University, Raleigh, NC 
Area:
Membrane dynamics, SNAREs
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63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Li J, Xie J, Godec A, Weninger KR, Liu C, Smith JC, Hong L. Non-ergodicity of a globular protein extending beyond its functional timescale. Chemical Science. 13: 9668-9677. PMID 36091909 DOI: 10.1039/d2sc03069a  0.305
2021 Saikia N, Yanez-Orozco IS, Qiu R, Hao P, Milikisiyants S, Ou E, Hamilton GL, Weninger KR, Smirnova TI, Sanabria H, Ding F. Integrative structural dynamics probing of the conformational heterogeneity in synaptosomal-associated protein 25. Cell Reports. Physical Science. 2. PMID 34888535 DOI: 10.1016/j.xcrp.2021.100616  0.564
2020 Larsen JB, Rosholm KR, Kennard C, Pedersen SL, Munch HK, Tkach V, Sakon JJ, Bjørnholm T, Weninger KR, Bendix PM, Jensen KJ, Hatzakis NS, Uline MJ, Stamou D. How Membrane Geometry Regulates Protein Sorting Independently of Mean Curvature. Acs Central Science. 6: 1159-1168. PMID 32724850 DOI: 10.1021/Acscentsci.0C00419  0.679
2020 Hao P, LeBlanc SJ, Case BC, Elston TC, Hingorani MM, Erie DA, Weninger KR. Recurrent mismatch binding by MutS mobile clamps on DNA localizes repair complexes nearby. Proceedings of the National Academy of Sciences of the United States of America. PMID 32669440 DOI: 10.1073/Pnas.1918517117  0.373
2020 Bradford KC, Wilkins H, Hao P, Li ZM, Wang B, Burke D, Wu D, Smith AE, Spaller L, Du C, Gauer JW, Chan E, Hsieh P, Weninger KR, Erie DA. Dynamic human MutSα-MutLα complexes compact mismatched DNA. Proceedings of the National Academy of Sciences of the United States of America. PMID 32586954 DOI: 10.1073/Pnas.1918519117  0.392
2020 Xu P, Pan F, Roland C, Sagui C, Weninger K. Dynamics of strand slippage in DNA hairpins formed by CAG repeats: roles of sequence parity and trinucleotide interrupts. Nucleic Acids Research. PMID 31974547 DOI: 10.1093/Nar/Gkaa036  0.361
2019 Choi UB, Sanabria H, Smirnova T, Bowen ME, Weninger KR. Spontaneous Switching among Conformational Ensembles in Intrinsically Disordered Proteins. Biomolecules. 9. PMID 30909517 DOI: 10.3390/biom9030114  0.693
2019 Qiu R, DeRocco VC, Harris C, Sharma A, Hingorani MM, Erie DA, Weninger KR. Large conformational changes in MutS during DNA scanning, mismatch recognition and repair signaling. The Embo Journal. 38. PMID 30770383 DOI: 10.15252/embj.2019101518  0.509
2019 Xu P, Hensley A, Chan E, Weninger KR. Toward Single Molecule FRET Studies of DNA Mismatch Repair in Live Bacteria Biophysical Journal. 116: 139a. DOI: 10.1016/J.Bpj.2018.11.772  0.378
2018 Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Adariani SR, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Weninger KR, et al. Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. PMID 30327572 DOI: 10.1038/S41592-018-0193-X  0.609
2018 LeBlanc SJ, Gauer JW, Hao P, Case BC, Hingorani MM, Weninger KR, Erie DA. Coordinated protein and DNA conformational changes govern mismatch repair initiation by MutS. Nucleic Acids Research. PMID 30272207 DOI: 10.1093/Nar/Gky865  0.387
2018 Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Rezaei Adariani S, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Weninger KR, et al. Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. 15: 669-676. PMID 30171252 DOI: 10.1038/S41592-018-0085-0  0.646
2018 Roushan M, Azad Z, Movahed S, Ray PD, Livshits GI, Lim SF, Weninger KR, Riehn R. Motor-like DNA motion due to an ATP-hydrolyzing protein under nanoconfinement. Scientific Reports. 8: 10036. PMID 29968756 DOI: 10.1038/S41598-018-28278-0  0.359
2018 Lin X, Roy S, Jolly MK, Bocci F, Schafer NP, Tsai MY, Chen Y, He Y, Grishaev A, Weninger K, Orban J, Kulkarni P, Rangarajan G, Levine H, Onuchic JN. PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer. Journal of Molecular Biology. PMID 29758263 DOI: 10.1016/J.Jmb.2018.05.011  0.358
2018 Hao P, LeBlanc S, Erie D, Weninger K. Single Molecule Experiments Reveal Molecular Level Details of MutS-MutL Interactions in DNA Mismatch Activated Sliding Clamp Biophysical Journal. 114: 85a. DOI: 10.1016/J.Bpj.2017.11.508  0.38
2018 Xu P, Weninger K. Single Molecule FRET Observations of Folding for DNA Hairpins Containing Trinucleotide Repeats Biophysical Journal. 114: 599a. DOI: 10.1016/J.Bpj.2017.11.3275  0.398
2017 Kulkarni P, Jolly MK, Jia D, Mooney SM, Bhargava A, Kagohara LT, Chen Y, Hao P, He Y, Veltri RW, Grishaev A, Weninger K, Levine H, Orban J. Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity. Proceedings of the National Academy of Sciences of the United States of America. PMID 28289210 DOI: 10.1073/Pnas.1700082114  0.34
2017 LeBlanc S, Gauer J, Hao P, Walser TY, Weninger K, Erie D. Dynamic Studies of MutS-MutL-DNA Complexes in Mismatch Repair Biophysical Journal. 112: 516a-517a. DOI: 10.1016/J.Bpj.2016.11.2793  0.341
2017 Hao P, Qiu R, Erie D, Weninger K. Mismatch Repair on the Go: Extending the Mechanical Model of DNA Mismatch Repair through Single Molecule Study Biophysical Journal. 112: 514a-515a. DOI: 10.1016/J.Bpj.2016.11.2782  0.573
2017 Erie D, Bradford K, Wilkins H, Bower J, Wang Z, Gauer J, Satusky M, Qiu R, Weninger K, Kaur P, Wang H. Single Molecule Fluorescence and Atomic Force Microscopy Studies of DNA Repair Biophysical Journal. 112: 7a. DOI: 10.1016/J.Bpj.2016.11.061  0.42
2016 Gauer JW, LeBlanc S, Hao P, Qiu R, Case BC, Sakato M, Hingorani MM, Erie DA, Weninger KR. Single-Molecule FRET to Measure Conformational Dynamics of DNA Mismatch Repair Proteins. Methods in Enzymology. 581: 285-315. PMID 27793283 DOI: 10.1016/Bs.Mie.2016.08.012  0.647
2016 Fletcher PL, Fletcher MD, Weninger KR. “Metalloproteases in new world scorpion venoms cleave intracellular membrane fusion SNARE proteins VAMP2 and VAMP8” Toxicon. 117: 104. DOI: 10.1016/J.Toxicon.2016.04.008  0.349
2016 Weninger K, Qiu R, Ou E, Milikisiyants S, Sanabria H, Smirnova TI. smFRET and DEER Distance Measurements as Applied to Disordered and Structured Proteins Biophysical Journal. 110: 559a. DOI: 10.1016/J.Bpj.2015.11.2987  0.611
2016 Breuer A, Larsen J, Røskva Rosholm K, Pedersenb SL, Munch HK, Tkach V, Sakon JJ, Bjørnholm T, Weninger KR, Bendix PM, Jensen KJ, Uline MJ, Hatzakis NS, Stamou D. tN-Ras, Synaptotagmin1 C2Ab, Annexinb12 and Amphiphysin NBAR can Discriminate Spherical from Cylindrical Membrane Curvature Biophysical Journal. 110: 357a. DOI: 10.1016/J.Bpj.2015.11.1924  0.669
2015 Qiu R, Sakato M, Sacho EJ, Wilkins H, Zhang X, Modrich P, Hingorani MM, Erie DA, Weninger KR. MutL traps MutS at a DNA mismatch. Proceedings of the National Academy of Sciences of the United States of America. 112: 10914-9. PMID 26283381 DOI: 10.1073/Pnas.1505655112  0.605
2015 He Y, Chen Y, Mooney SM, Rajagopalan K, Bhargava A, Sacho E, Weninger K, Bryan PN, Kulkarni P, Orban J. Phosphorylation-induced Conformational Ensemble Switching in an Intrinsically Disordered Cancer/Testis Antigen. The Journal of Biological Chemistry. 290: 25090-102. PMID 26242913 DOI: 10.1074/Jbc.M115.658583  0.313
2015 weninger k, Hao P, Yang Y, Sacho EJ, Qiu R. Toward Adding Complexity in Single Molecule FRET Studies of DNA Mismatch Repair Biophysical Journal. 108: 69a-70a. DOI: 10.1016/J.Bpj.2014.11.414  0.608
2014 Erie DA, Weninger KR. Single molecule studies of DNA mismatch repair. Dna Repair. 20: 71-81. PMID 24746644 DOI: 10.1016/J.Dnarep.2014.03.007  0.409
2014 DeRocco VC, Sass LE, Qiu R, Weninger KR, Erie DA. Dynamics of MutS-mismatched DNA complexes are predictive of their repair phenotypes. Biochemistry. 53: 2043-52. PMID 24588663 DOI: 10.1021/Bi401429B  0.599
2014 Mooney SM, Qiu R, Kim JJ, Sacho EJ, Rajagopalan K, Johng D, Shiraishi T, Kulkarni P, Weninger KR. Cancer/testis antigen PAGE4, a regulator of c-Jun transactivation, is phosphorylated by homeodomain-interacting protein kinase 1, a component of the stress-response pathway. Biochemistry. 53: 1670-9. PMID 24559171 DOI: 10.1021/Bi500013W  0.523
2014 Rajagopalan K, Qiu R, Mooney SM, Rao S, Shiraishi T, Sacho E, Huang H, Shapiro E, Weninger KR, Kulkarni P. The Stress-response protein prostate-associated gene 4, interacts with c-Jun and potentiates its transactivation. Biochimica Et Biophysica Acta. 1842: 154-63. PMID 24263171 DOI: 10.1016/J.Bbadis.2013.11.014  0.55
2014 Wessels L, Weninger K. Investigation of Calcein for Reporting Content Mixing During Viral Membrane Fusion Experiments Biophysical Journal. 106: 707a. DOI: 10.1016/J.Bpj.2013.11.3922  0.333
2013 Qiu R, Weninger K. Dynamics of DNA Mismatch Repair Initiation Complex Revealed by Single Molecule Fluorescence Biophysical Journal. 104: 368a. DOI: 10.1016/J.Bpj.2012.11.2043  0.628
2013 Brunger AT, Strop P, Vrljic M, Bowen M, Chu S, Weninger KR. Macromolecular models by single molecule FRET Nato Science For Peace and Security Series B: Physics and Biophysics. 1-19. DOI: 10.1007/978-94-007-4923-8-1  0.436
2012 Choi UB, Weninger KR, Bowen ME. Immobilization of proteins for single-molecule fluorescence resonance energy transfer measurements of conformation and dynamics. Methods in Molecular Biology (Clifton, N.J.). 896: 3-20. PMID 22821514 DOI: 10.1007/978-1-4614-3704-8_1  0.747
2012 Qiu R, DeRocco VC, Harris C, Sharma A, Hingorani MM, Erie DA, Weninger KR. Large conformational changes in MutS during DNA scanning, mismatch recognition and repair signalling. The Embo Journal. 31: 2528-40. PMID 22505031 DOI: 10.1038/Emboj.2012.95  0.632
2012 Stamou D, Christensen SM, Ehrlich N, Tkach V, Sakon JJ, Choi UB, Weninger KR. Cooperative All-Or-None Recruitment of Synaptotagmin C2AB on Single Vesicles Explains Why Ca2+ Regulates the Amplitude of SNARE Mediated Vesicle Fusion Biophysical Journal. 102: 318a-319a. DOI: 10.1016/J.Bpj.2011.11.1750  0.755
2012 Qiu R, Weninger K. Conformational Changes in MutS during Mismtach Repair Signaling Determined with Single Molecule FRET Biophysical Journal. 102: 283a. DOI: 10.1016/J.Bpj.2011.11.1564  0.617
2012 Sacho EJ, Weninger KR. Single Molecule FRET Studies of the DNA Mismatch Repair Protein MutSα using Specific Labeling with Unnatural Amino Acids Biophysical Journal. 102: 282a. DOI: 10.1016/J.Bpj.2011.11.1560  0.406
2012 Weninger K. Dynamics of DNA Mismatch Repair Revealed by Single Molecule FRET Biophysical Journal. 102: 235a. DOI: 10.1016/J.Bpj.2011.11.1291  0.443
2011 Weninger KR. Complexin arrests a neighbor. Nature Structural & Molecular Biology. 18: 861-3. PMID 21811310 DOI: 10.1038/Nsmb.2118  0.303
2011 Choi UB, McCann JJ, Weninger KR, Bowen ME. Beyond the random coil: stochastic conformational switching in intrinsically disordered proteins. Structure (London, England : 1993). 19: 566-76. PMID 21481779 DOI: 10.1016/J.Str.2011.01.011  0.723
2011 Brunger AT, Strop P, Vrljic M, Chu S, Weninger KR. Three-dimensional molecular modeling with single molecule FRET. Journal of Structural Biology. 173: 497-505. PMID 20837146 DOI: 10.1016/J.Jsb.2010.09.004  0.556
2011 Qiu R, Weninger K. Single Molecule FRET Study of Nucleotide Binding Effects on Muts Proteins Biophysical Journal. 100: 223a. DOI: 10.1016/J.Bpj.2010.12.1431  0.608
2010 DeRocco V, Anderson T, Piehler J, Erie DA, Weninger K. Four-color single-molecule fluorescence with noncovalent dye labeling to monitor dynamic multimolecular complexes. Biotechniques. 49: 807-16. PMID 21091445 DOI: 10.2144/000113551  0.479
2010 McCann JJ, Choi UB, Zheng L, Weninger K, Bowen ME. Optimizing methods to recover absolute FRET efficiency from immobilized single molecules. Biophysical Journal. 99: 961-70. PMID 20682275 DOI: 10.1016/J.Bpj.2010.04.063  0.723
2010 Sass LE, Lanyi C, Weninger K, Erie DA. Single-molecule FRET TACKLE reveals highly dynamic mismatched DNA-MutS complexes. Biochemistry. 49: 3174-90. PMID 20180598 DOI: 10.1021/Bi901871U  0.438
2010 Choi UB, Strop P, Vrljic M, Chu S, Brunger AT, Weninger KR. Single-molecule FRET-derived model of the synaptotagmin 1-SNARE fusion complex. Nature Structural & Molecular Biology. 17: 318-24. PMID 20173763 DOI: 10.1038/Nsmb.1763  0.756
2010 Sakon JJ, Weninger KR. Detecting the conformation of individual proteins in live cells. Nature Methods. 7: 203-5. PMID 20118931 DOI: 10.1038/Nmeth.1421  0.708
2010 Fletcher PL, Fletcher MD, Weninger K, Anderson TE, Martin BM. Vesicle-associated membrane protein (VAMP) cleavage by a new metalloprotease from the Brazilian scorpion Tityus serrulatus. The Journal of Biological Chemistry. 285: 7405-16. PMID 20026600 DOI: 10.1074/Jbc.M109.028365  0.352
2010 McCann JJ, Choi UB, Zheng L, Weninger K, Bowen ME. Recovering Absolute Fret Efficiency from Single Molecules: Comparing Methods of Gamma Correction Biophysical Journal. 98: 186a-187a. DOI: 10.1016/J.Bpj.2009.12.998  0.717
2009 Wessels L, Weninger K. Physical aspects of viral membrane fusion. Thescientificworldjournal. 9: 764-80. PMID 19705037 DOI: 10.1100/Tsw.2009.76  0.631
2009 Weninger K. How Do Adhesion Proteins Stick? Structure. 17: 1035-1036. PMID 19679080 DOI: 10.1016/J.Str.2009.07.003  0.34
2009 Brunger AT, Weninger K, Bowen M, Chu S. Single-molecule studies of the neuronal SNARE fusion machinery. Annual Review of Biochemistry. 78: 903-28. PMID 19489736 DOI: 10.1146/Annurev.Biochem.77.070306.103621  0.569
2009 Thongthai W, Weninger K. Photoinactivation of sindbis virus infectivity without inhibition of membrane Fusion Photochemistry and Photobiology. 85: 801-806. PMID 19067945 DOI: 10.1111/J.1751-1097.2008.00475.X  0.333
2009 Sakon JJ, Ribeill GJ, Garguilo JM, Perkins J, Weninger KR, Nemanich RJ. Fluorescence quenching effects of nanocrystalline diamond surfaces Diamond and Related Materials. 18: 82-87. DOI: 10.1016/J.Diamond.2008.10.028  0.656
2009 Weninger KR, Sass LE, DeRocco VC, Anderson T, Erie DA. DNA repair protein dynamics through single-molecule fluorescence Optics Infobase Conference Papers.  0.328
2008 Weninger K, Bowen ME, Choi UB, Chu S, Brunger AT. Accessory proteins stabilize the acceptor complex for synaptobrevin, the 1:1 syntaxin/SNAP-25 complex. Structure (London, England : 1993). 16: 308-20. PMID 18275821 DOI: 10.1016/J.Str.2007.12.010  0.743
2007 Li Y, Augustine GJ, Weninger K. Kinetics of complexin binding to the SNARE complex: correcting single molecule FRET measurements for hidden events. Biophysical Journal. 93: 2178-87. PMID 17513363 DOI: 10.1529/Biophysj.106.101220  0.408
2007 Wessels L, Elting MW, Scimeca D, Weninger K. Rapid membrane fusion of individual virus particles with supported lipid bilayers. Biophysical Journal. 93: 526-38. PMID 17449662 DOI: 10.1529/Biophysj.106.097485  0.615
2005 Bowen ME, Weninger K, Ernst J, Chu S, Brunger AT. Single-molecule studies of synaptotagmin and complexin binding to the SNARE complex. Biophysical Journal. 89: 690-702. PMID 15821166 DOI: 10.1529/Biophysj.104.054064  0.582
2004 Bowen ME, Weninger K, Brunger AT, Chu S. Single molecule observation of liposome-bilayer fusion thermally induced by soluble N-ethyl maleimide sensitive-factor attachment protein receptors (SNAREs). Biophysical Journal. 87: 3569-84. PMID 15347585 DOI: 10.1529/Biophysj.104.048637  0.569
2003 Weninger K, Bowen ME, Chu S, Brunger AT. Single-molecule studies of SNARE complex assembly reveal parallel and antiparallel configurations. Proceedings of the National Academy of Sciences of the United States of America. 100: 14800-5. PMID 14657376 DOI: 10.1073/Pnas.2036428100  0.579
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