Michael J. Axtell, Ph.D.

2003 University of California, Berkeley, Berkeley, CA 
Plant Pathology Agriculture, Molecular Biology, Genetics
"Michael Axtell"


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Brian J. Staskawicz grad student 2003 UC Berkeley
 (Indirect pathogen recognition in plant innate immunity.)
David P. Bartel post-doc (Chemistry Tree)


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Seth Polydore grad student Penn State University, University Park (Plant Biology Tree)
Charles A. Addo-Quaye grad student 2009 Penn State (Computational Biology Tree)
Qikun Liu grad student 2014 Penn State (Plant Biology Tree)
Ceyda Coruh grad student 2007-2014 Penn State (Plant Biology Tree)
Feng Wang grad student 2011-2016 Penn State University, University Park (Cell Biology Tree)
Saima Shahid grad student 2011-2017 Penn State (Plant Biology Tree)
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Lunardon A, Kariuki SM, Axtell MJ. (2021) Expression and processing of polycistronic artificial microRNAs and trans-acting siRNAs from transiently introduced transgenes in Solanum lycopersicum and Nicotiana benthamiana. The Plant Journal : For Cell and Molecular Biology
Lunardon A, Johnson NR, Hagerott E, et al. (2020) Integrated annotations and analyses of small RNA-producing loci from 47 diverse plants. Genome Research
Johnson NR, dePamphilis CW, Axtell MJ. (2019) Compensatory sequence variation between -species small RNAs and their target sites. Elife. 8
Yang Z, Wafula EK, Kim G, et al. (2019) Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants. Nature Plants
Johnson NR, Axtell MJ. (2019) Small RNA warfare: exploring origins and function of trans-species microRNAs from the parasitic plant Cuscuta. Current Opinion in Plant Biology. 50: 76-81
Polydore S, Lunardon A, Axtell MJ. (2018) Several phased siRNA annotation methods can frequently misidentify 24 nucleotide siRNA-dominated loci. Plant Direct. 2: e00101
Polydore S, Axtell MJ. (2018) Analysis of RDR1/RDR2/RDR6-independent small RNAs in Arabidopsis thaliana improves MIRNA annotations and reveals unexplained types of siRNA loci. The Plant Journal : For Cell and Molecular Biology
Shahid S, Kim G, Johnson NR, et al. (2018) MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs. Nature. 553: 82-85
Wang F, Axtell MJ. (2016) AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology
Wang F, Johnson NR, Coruh C, et al. (2016) Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAs. Nucleic Acids Research
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