Nikesh Kotecha, Ph.D.

Affiliations: 
2008 Stanford University, Palo Alto, CA 
Area:
Immunology, Computer Science, Bioinformatics Biology
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"Nikesh Kotecha"

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Garry P. Nolan grad student 2008 Stanford
 (Development, management and analysis of flow cytometry based cell signaling assays in a translational research environment to diagnose juvenile myelomonocytic leukemia.)
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Publications

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Karr JR, Guturu H, Chen EY, et al. (2015) NetworkPainter: dynamic intracellular pathway animation in Cytobank. Bmc Bioinformatics. 16: 172
Chen TJ, Kotecha N. (2014) Cytobank: providing an analytics platform for community cytometry data analysis and collaboration. Current Topics in Microbiology and Immunology. 377: 127-57
Chen TJ, Kotecha N. (2014) Revealing the Immune Population Hierarchy Using Novel Interactive Visualization Tools, a Comparison of Methods: Sunburst, viSNE, and Spade on Mass Cytometry Data Blood. 124: 5122-5122
Spidlen J, Breuer K, Rosenberg C, et al. (2012) FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 81: 727-31
Kotecha N, Krutzik PO, Irish JM. (2010) Web-based analysis and publication of flow cytometry experiments. Current Protocols in Cytometry / Editorial Board, J. Paul Robinson, Managing Editor ... [Et Al.]. Unit10.17
Hammer MM, Kotecha N, Irish JM, et al. (2009) WebFlow: a software package for high-throughput analysis of flow cytometry data. Assay and Drug Development Technologies. 7: 44-55
Kotecha N, Flores NJ, Irish JM, et al. (2008) Single-cell profiling identifies aberrant STAT5 activation in myeloid malignancies with specific clinical and biologic correlates. Cancer Cell. 14: 335-43
Kotecha N, Bruck K, Lu W, et al. (2008) Pathway knowledge base: An integrated pathway resource using BioPAX Applied Ontology. 3: 235-245
Van Meter ME, Díaz-Flores E, Archard JA, et al. (2007) K-RasG12D expression induces hyperproliferation and aberrant signaling in primary hematopoietic stem/progenitor cells. Blood. 109: 3945-52
Kotecha N, Flores NJ, Irish JM, et al. (2007) A Novel Assay for Juvenile Myelomonocytic Leukemia Based on Aberrant Signaling Networks Measured Via Phospho-Specific Flow Cytometry Reduces Diagnosis Time from Weeks to Days. Blood. 110: 546-546
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