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Jef D. Boeke, PhD Dsc

Affiliations: 
1985-2013 Molecular Biology & Genetics Johns Hopkins University, Baltimore, MD 
 2014- Institute for Systems Genetics NYU Langone Health  
Area:
Molecular Biology, Genetics, Microbiology Biology
Website:
https://med.nyu.edu/research/boeke-lab/
Google:
"Jef Boeke"
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Parents

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Norton D. Zinder grad student 1982 Rockefeller (Chemistry Tree)
Peter Model grad student 1977-1982 Rockefeller (Chemistry Tree)
 (coadvised by Norton Zinder and Peter Model)
Gerald R. Fink post-doc (Evolution Tree)

Children

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Allen T Yu research assistant 2007-2008 Johns Hopkins (Cell Biology Tree)
James E DiCarlo research assistant 2006-2010 Johns Hopkins (Chemistry Tree)
Kalpana Gupta grad student 2000 Johns Hopkins
Oxana K. Pickeral grad student 2000 Johns Hopkins
Gregory J. Cost grad student 2001 Johns Hopkins
Eric C. Bolton grad student 2003 Johns Hopkins
Siew L. Ooi grad student 2003 Johns Hopkins
Nurjana Bachman grad student 2004 Johns Hopkins
Jeffrey S. Han grad student 2005 Johns Hopkins
Ivana Celic grad student 2007 Johns Hopkins
Wen-Chih W. Cheng grad student 2007 Johns Hopkins
Edel Hyland grad student 2003-2008 NYU School of Medicine (Evolution Tree)
Yu-yi Lin grad student 2009 Johns Hopkins
Anne Norris grad student 2009 Johns Hopkins
Brad P. Barnett grad student 2010 Johns Hopkins
Jessica S. Dymond grad student 2011 Johns Hopkins
Veena P. Gnanakkan grad student 2012 Johns Hopkins
Giovanni Stracquadanio post-doc 2010-2014 Johns Hopkins (Computational Biology Tree)
Paolo Mita post-doc 2012-2018 Johns Hopkins University School of Medicine; NYU Langone Medical center

Collaborators

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Publications

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Jiang S, Luo Z, Wu J, et al. (2023) Building a eukaryotic chromosome arm by de novo design and synthesis. Nature Communications. 14: 7886
Williams TC, Kroukamp H, Xu X, et al. (2023) Parallel laboratory evolution and rational debugging reveal genomic plasticity to synthetic chromosome XIV defects. Cell Genomics. 3: 100379
McCulloch LH, Sambasivam V, Hughes AL, et al. (2023) Consequences of a telomerase-related fitness defect and chromosome substitution technology in yeast strains. Cell Genomics. 3: 100419
Blount BA, Lu X, Driessen MRM, et al. (2023) Synthetic yeast chromosome XI design provides a testbed for the study of extrachromosomal circular DNA dynamics. Cell Genomics. 3: 100418
Foo JL, Kitano S, Susanto AV, et al. (2023) Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration. Cell Genomics. 3: 100435
Lauer S, Luo J, Lazar-Stefanita L, et al. (2023) Context-dependent neocentromere activity in synthetic yeast chromosome . Cell Genomics. 3: 100437
Shen Y, Gao F, Wang Y, et al. (2023) Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast. Cell Genomics. 3: 100364
Luo J, Vale-Silva LA, Raghavan AR, et al. (2023) Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function. Cell Genomics. 3: 100439
Zhang W, Lazar-Stefanita L, Yamashita H, et al. (2023) Manipulating the 3D organization of the largest synthetic yeast chromosome. Molecular Cell
Zhao Y, Coelho C, Hughes AL, et al. (2023) Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions. Cell
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