Daniel P. Smith

2011 Oregon State University, Corvallis, OR 
"Daniel Smith"


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Stephen J. Giovannoni grad student 2011 Oregon State
 (The Proteomic and Transcriptomic Responses to Iron, Sulfur, and Nitrogen Limitation in the Abundant Marine Bacterium Candidatus Pelagibacter ubique.)
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Smith DP, Nicora CD, Carini P, et al. (2016) Proteome Remodeling in Response to Sulfur Limitation in "Candidatus Pelagibacter ubique". Msystems. 1
Smith DP, Thrash JC, Nicora CD, et al. (2013) Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium. Mbio. 4: e00133-12
Zarraonaindia I, Smith DP, Gilbert JA. (2013) Beyond the genome: community-level analysis of the microbial world. Biology & Philosophy. 28: 261-282
Gilbert JA, Bao Y, Wang H, et al. (2012) Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012. Standards in Genomic Sciences. 6: 276-86
Sun J, Steindler L, Thrash JC, et al. (2011) One carbon metabolism in SAR11 pelagic marine bacteria. Plos One. 6: e23973
Steindler L, Schwalbach MS, Smith DP, et al. (2011) Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration. Plos One. 6: e19725
Sowell SM, Abraham PE, Shah M, et al. (2011) Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. The Isme Journal. 5: 856-65
Smith DP, Kitner JB, Norbeck AD, et al. (2010) Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique. Plos One. 5: e10487
Schwalbach MS, Tripp HJ, Steindler L, et al. (2010) The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environmental Microbiology. 12: 490-500
Meyer MM, Ames TD, Smith DP, et al. (2009) Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'. Bmc Genomics. 10: 268
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