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Andrew Magis - Publications

Affiliations: 
2010-2014 Biophysics and Computational Biology University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Watanabe K, Wilmanski T, Diener C, Earls JC, Zimmer A, Lincoln B, Hadlock JJ, Lovejoy JC, Gibbons SM, Magis AT, Hood L, Price ND, Rappaport N. Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention. Nature Medicine. PMID 36941332 DOI: 10.1038/s41591-023-02248-0  0.483
2022 Wilmanski T, Kornilov SA, Diener C, Conomos MP, Lovejoy JC, Sebastiani P, Orwoll ES, Hood L, Price ND, Rappaport N, Magis AT, Gibbons SM. Heterogeneity in statin responses explained by variation in the human gut microbiome. Med (New York, N.Y.). 3: 388-405.e6. PMID 35690059 DOI: 10.1016/j.medj.2022.04.007  0.447
2022 Omenn GS, Magis AT, Price ND, Hood L. Personal Dense Dynamic Data Clouds Connect Systems Biomedicine to Scientific Wellness. Methods in Molecular Biology (Clifton, N.J.). 2486: 315-334. PMID 35437729 DOI: 10.1007/978-1-0716-2265-0_15  0.508
2022 Heath L, Earls JC, Magis AT, Kornilov SA, Lovejoy JC, Funk CC, Rappaport N, Logsdon BA, Mangravite LM, Kunkle BW, Martin ER, Naj AC, Ertekin-Taner N, Golde TE, Hood L, et al. Manifestations of Alzheimer's disease genetic risk in the blood are evident in a multiomic analysis in healthy adults aged 18 to 90. Scientific Reports. 12: 6117. PMID 35413975 DOI: 10.1038/s41598-022-09825-2  0.494
2022 Su Y, Yuan D, Chen DG, Ng RH, Wang K, Choi J, Li S, Hong S, Zhang R, Xie J, Kornilov SA, Scherler K, Pavlovitch-Bedzyk AJ, Dong S, Lausted C, ... ... Magis AT, et al. Multiple early factors anticipate post-acute COVID-19 sequelae. Cell. PMID 35216672 DOI: 10.1016/j.cell.2022.01.014  0.467
2021 Diener C, Qin S, Zhou Y, Patwardhan S, Tang L, Lovejoy JC, Magis AT, Price ND, Hood L, Gibbons SM. Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans. Msystems. e0096421. PMID 34519531 DOI: 10.1128/mSystems.00964-21  0.466
2021 Lee JW, Su Y, Baloni P, Chen D, Pavlovitch-Bedzyk AJ, Yuan D, Duvvuri VR, Ng RH, Choi J, Xie J, Zhang R, Murray K, Kornilov S, Smith B, Magis AT, et al. Integrated analysis of plasma and single immune cells uncovers metabolic changes in individuals with COVID-19. Nature Biotechnology. PMID 34489601 DOI: 10.1038/s41587-021-01020-4  0.487
2021 Zimmer A, Korem Y, Rappaport N, Wilmanski T, Baloni P, Jade K, Robinson M, Magis AT, Lovejoy J, Gibbons SM, Hood L, Price ND. The geometry of clinical labs and wellness states from deeply phenotyped humans. Nature Communications. 12: 3578. PMID 34117230 DOI: 10.1038/s41467-021-23849-8  0.496
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, ... Magis AT, et al. Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. PMID 33731896 DOI: 10.1038/s42255-021-00377-9  0.436
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, ... Magis AT, et al. Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. 3: 274-286. PMID 33619379 DOI: 10.1038/s42255-021-00348-0  0.467
2020 Su Y, Chen D, Yuan D, Lausted C, Choi J, Dai CL, Voillet V, Duvvuri VR, Scherler K, Troisch P, Baloni P, Qin G, Smith B, Kornilov SA, Rostomily C, ... ... Magis AT, et al. Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19. Cell. PMID 33171100 DOI: 10.1016/j.cell.2020.10.037  0.49
2020 Manor O, Dai CL, Kornilov SA, Smith B, Price ND, Lovejoy JC, Gibbons SM, Magis AT. Health and disease markers correlate with gut microbiome composition across thousands of people. Nature Communications. 11: 5206. PMID 33060586 DOI: 10.1038/s41467-020-18871-1  0.489
2020 Magis AT, Rappaport N, Conomos MP, Omenn GS, Lovejoy JC, Hood L, Price ND. Untargeted longitudinal analysis of a wellness cohort identifies markers of metastatic cancer years prior to diagnosis. Scientific Reports. 10: 16275. PMID 33004987 DOI: 10.1038/s41598-020-73451-z  0.459
2020 Wainberg M, Magis AT, Earls JC, Lovejoy JC, Sinnott-Armstrong N, Omenn GS, Hood L, Price ND. Multiomic blood correlates of genetic risk identify presymptomatic disease alterations. Proceedings of the National Academy of Sciences of the United States of America. 117: 21813-21820. PMID 32817414 DOI: 10.1073/Pnas.2001429117  0.52
2020 Su Y, Chen D, Lausted C, Yuan D, Choi J, Dai C, Voillet V, Scherler K, Troisch P, Duvvuri VR, Baloni P, Qin G, Smith B, Kornilov S, Rostomily C, ... ... Magis A, et al. Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories. Biorxiv : the Preprint Server For Biology. PMID 32766585 DOI: 10.1101/2020.07.27.224063  0.447
2020 Levy R, Magis AT, Earls JC, Manor O, Wilmanski T, Lovejoy J, Gibbons SM, Omenn GS, Hood L, Price ND. Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome. Proceedings of the National Academy of Sciences of the United States of America. PMID 32471946 DOI: 10.1073/Pnas.1922498117  0.481
2019 Earls JC, Rappaport N, Heath L, Wilmanski T, Magis AT, Schork NJ, Omenn GS, Lovejoy J, Hood L, Price ND. Multi-Omic Biological Age Estimation and Its Correlation With Wellness and Disease Phenotypes: A Longitudinal Study of 3,558 Individuals. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 74: S52-S60. PMID 31724055 DOI: 10.1093/Gerona/Glz220  0.493
2019 Wilmanski T, Rappaport N, Earls JC, Magis AT, Manor O, Lovejoy J, Omenn GS, Hood L, Gibbons SM, Price ND. Blood metabolome predicts gut microbiome α-diversity in humans. Nature Biotechnology. PMID 31477923 DOI: 10.1038/S41587-019-0233-9  0.483
2019 Zubair N, Conomos MP, Hood L, Omenn GS, Price ND, Spring BJ, Magis AT, Lovejoy JC. Genetic Predisposition Impacts Clinical Changes in a Lifestyle Coaching Program. Scientific Reports. 9: 6805. PMID 31048771 DOI: 10.1038/S41598-019-43058-0  0.481
2019 Heath LM, Earls JC, Magis AT, Kornilov SA, Hood L, Lovejoy JC, Price ND. P2-141: THE MANIFESTATION OF GENETIC RISK FOR ALZHEIMER'S DISEASE IN BLOOD ACROSS ADULTHOOD: A MULTI-OMIC PHENOME-WIDE ASSOCIATION STUDY (PHEWAS) APPROACH Alzheimer's & Dementia. 15: P627-P627. DOI: 10.1016/J.Jalz.2019.06.2548  0.464
2018 Magis AT, Earls JC, Glusman G, Omenn GS, Lovejoy JC, Price ND, Hood L. Reply to "Precision medicine in the clouds". Nature Biotechnology. 36: 680-682. PMID 30080845 DOI: 10.1038/Nbt.4211  0.384
2017 Seo SO, Janssen H, Magis A, Wang Y, Lu T, Price ND, Jin YS, Blaschek HP. Genomic, transcriptional and phenotypic analysis of the glucose derepressed Clostridium beijerinckii mutant exhibiting acid crash phenotype. Biotechnology Journal. PMID 28762642 DOI: 10.1002/Biot.201700182  0.501
2017 Price ND, Magis AT, Earls JC, Glusman G, Levy R, Lausted C, McDonald DT, Kusebauch U, Moss CL, Zhou Y, Qin S, Moritz RL, Brogaard K, Omenn GS, Lovejoy JC, et al. A wellness study of 108 individuals using personal, dense, dynamic data clouds. Nature Biotechnology. PMID 28714965 DOI: 10.1038/Nbt.3870  0.521
2015 Magis AT, Funk CC, Price ND. SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis. Ieee Life Sciences Letters. 1: 22-25. PMID 29270443 DOI: 10.1109/LLS.2015.2465870  0.466
2014 Ma S, Sung J, Magis AT, Wang Y, Geman D, Price ND. Measuring the effect of inter-study variability on estimating prediction error. Plos One. 9: e110840. PMID 25330348 DOI: 10.1371/Journal.Pone.0110840  0.711
2014 Craig TA, Zhang Y, Magis AT, Funk CC, Price ND, Ekker SC, Kumar R. Detection of 1α,25-dihydroxyvitamin D-regulated miRNAs in zebrafish by whole transcriptome sequencing. Zebrafish. 11: 207-18. PMID 24650217 DOI: 10.1089/Zeb.2013.0899  0.397
2014 Ma S, Sung J, Magis AT, Wang Y, Geman D, Price ND. Measuring the effect of inter-study variability on estimating prediction error Plos One. 9. DOI: 10.1371/journal.pone.0110840  0.711
2013 Sung J, Kim PJ, Ma S, Funk CC, Magis AT, Wang Y, Hood L, Geman D, Price ND. Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures. Plos Computational Biology. 9: e1003148. PMID 23935471 DOI: 10.1371/Journal.Pcbi.1003148  0.702
2013 Earls JC, Eddy JA, Funk CC, Ko Y, Magis AT, Price ND. AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures. Bmc Bioinformatics. 14: 78. PMID 23496976 DOI: 10.1186/1471-2105-14-78  0.698
2012 Magis AT, Price ND. The top-scoring 'N' algorithm: a generalized relative expression classification method from small numbers of biomolecules. Bmc Bioinformatics. 13: 227. PMID 22966958 DOI: 10.1186/1471-2105-13-227  0.49
2012 Craig TA, Zhang Y, McNulty MS, Middha S, Ketha H, Singh RJ, Magis AT, Funk C, Price ND, Ekker SC, Kumar R. Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish. Molecular Endocrinology (Baltimore, Md.). 26: 1630-42. PMID 22734042 DOI: 10.1210/Me.2012-1113  0.412
2011 Magis AT, Earls JC, Ko YH, Eddy JA, Price ND. Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup. Bioinformatics (Oxford, England). 27: 872-3. PMID 21257608 DOI: 10.1093/Bioinformatics/Btr033  0.68
2006 Heath LM, Earls JC, Magis AT, Conomos MP, Rohwer JE, Hood L, Lovejoy JC, Price ND. P2-123: A PHENOME-WIDE ASSOCIATION STUDY (PHEWAS) OF BLOOD-BASED BIOLOGICAL MARKERS AND APOLIPOPROTEIN E GENOTYPE ACROSS THE ADULT LIFESPAN Alzheimer's & Dementia. 14: P716-P716. DOI: 10.1016/J.Jalz.2018.06.809  0.441
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