Ephraim L. Tsalik, Ph.D. - Publications

Affiliations: 
Columbia University, New York, NY 

61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ko ER, Reller ME, Tillekeratne LG, Bodinayake CK, Miller C, Burke TW, Henao R, McClain MT, Suchindran S, Nicholson B, Blatt A, Petzold E, Tsalik EL, Nagahawatte A, Devasiri V, et al. Host-response transcriptional biomarkers accurately discriminate bacterial and viral infections of global relevance. Scientific Reports. 13: 22554. PMID 38110534 DOI: 10.1038/s41598-023-49734-6  0.304
2022 Ko ER, Henao R, Frankey K, Petzold EA, Isner PD, Jaehne AK, Allen N, Gardner-Gray J, Hurst G, Pflaum-Carlson J, Jayaprakash N, Rivers EP, Wang H, Ugalde I, Amanullah S, ... ... Tsalik EL, et al. Prospective Validation of a Rapid Host Gene Expression Test to Discriminate Bacterial From Viral Respiratory Infection. Jama Network Open. 5: e227299. PMID 35420659 DOI: 10.1001/jamanetworkopen.2022.7299  0.328
2021 Jaffe IS, Jaehne AK, Quackenbush E, Ko ER, Rivers EP, McClain MT, Ginsburg GS, Woods CW, Tsalik EL. Comparing the Diagnostic Accuracy of Clinician Judgment to a Novel Host Response Diagnostic for Acute Respiratory Illness. Open Forum Infectious Diseases. 8: ofab564. PMID 34888402 DOI: 10.1093/ofid/ofab564  0.333
2021 Tsalik EL, Henao R, Montgomery JL, Nawrocki JW, Aydin M, Lydon EC, Ko ER, Petzold E, Nicholson BP, Cairns CB, Glickman SW, Quackenbush E, Kingsmore SF, Jaehne AK, Rivers EP, et al. Discriminating Bacterial and Viral Infection Using a Rapid Host Gene Expression Test. Critical Care Medicine. PMID 33938716 DOI: 10.1097/CCM.0000000000005085  0.317
2021 McClain MT, Constantine FJ, Henao R, Liu Y, Tsalik EL, Burke TW, Steinbrink JM, Petzold E, Nicholson BP, Rolfe R, Kraft BD, Kelly MS, Saban DR, Yu C, Shen X, et al. Dysregulated transcriptional responses to SARS-CoV-2 in the periphery. Nature Communications. 12: 1079. PMID 33597532 DOI: 10.1038/s41467-021-21289-y  0.305
2020 Tillekeratne LG, Suchindran S, Ko ER, Petzold EA, Bodinayake CK, Nagahawatte A, Devasiri V, Kurukulasooriya R, Nicholson BP, McClain MT, Burke TW, Tsalik EL, Henao R, Ginsburg GS, Reller ME, et al. Previously Derived Host Gene Expression Classifiers Identify Bacterial and Viral Etiologies of Acute Febrile Respiratory Illness in a South Asian Population. Open Forum Infectious Diseases. 7: ofaa194. PMID 32617371 DOI: 10.1093/Ofid/Ofaa194  0.42
2019 Tsalik EL, Khine A, Talebpour A, Samiei A, Parmar V, Burke TW, Mcclain MT, Ginsburg GS, Woods CW, Henao R, Alavie T. Rapid, Sample-to-Answer Host Gene Expression Test to Diagnose Viral Infection. Open Forum Infectious Diseases. 6: ofz466. PMID 34150923 DOI: 10.1093/ofid/ofz466  0.319
2019 Doernberg SB, Komarow L, Tran TTT, Sund Z, Pandori MW, Jensen D, Tsalik EL, Deal CD, Chambers HF, Fowler VG, Evans SR, Patel R, Klausner JD. Simultaneous Evaluation of Diagnostic Assays for Pharyngeal and Rectal Neisseria gonorrhoeae and Chlamydia trachomatis Using a Master Protocol. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31734695 DOI: 10.1093/Cid/Ciz1105  0.319
2019 Ko ER, Philipson CW, Burke TW, Cer RZ, Bishop-Lilly KA, Voegtly LJ, Tsalik EL, Woods CW, Clark DV, Schully KL. Direct-from-blood RNA sequencing identifies the cause of post-bronchoscopy fever. Bmc Infectious Diseases. 19: 905. PMID 31660864 DOI: 10.1186/S12879-019-4462-9  0.341
2019 Lydon EC, Henao R, Burke TW, Aydin M, Nicholson BP, Glickman SW, Fowler VG, Quackenbush EB, Cairns CB, Kingsmore SF, Jaehne AK, Rivers EP, Langley RJ, Petzold E, Ko ER, ... ... Tsalik EL, et al. Validation of a host response test to distinguish bacterial and viral respiratory infection. Ebiomedicine. PMID 31631046 DOI: 10.1016/J.Ebiom.2019.09.040  0.435
2019 Ross MH, Zick BL, Tsalik EL. Host-Based Diagnostics for Acute Respiratory Infections. Clinical Therapeutics. PMID 31353133 DOI: 10.1016/J.Clinthera.2019.06.007  0.414
2019 Liu Y, Tsalik EL, Jiang Y, Ko ER, Woods CW, Henao R, Evans SR. Average Weighted Accuracy (AWA): Pragmatic Analysis for a RADICAL Study. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31157863 DOI: 10.1093/Cid/Ciz437  0.303
2019 Lydon EC, Bullard C, Aydin M, Better OM, Mazur A, Nicholson BP, Ko ER, McClain MT, Ginsburg GS, Woods CW, Burke TW, Henao R, Tsalik EL. A host gene expression approach for identifying triggers of asthma exacerbations. Plos One. 14: e0214871. PMID 30958855 DOI: 10.1371/Journal.Pone.0214871  0.336
2019 Tsalik EL, Khine A, Talebpour A, Samiei A, Parmar V, Burke TW, Mcclain MT, Ginsburg GS, Woods CW, Henao R, Alavie T. Rapid, Sample-to-Answer Host Gene Expression Test to Diagnose Viral Infection Open Forum Infectious Diseases. 6. DOI: 10.1093/Ofid/Ofz466  0.391
2019 Khan K, Betancourt-Quiroz M, Zaas AK, Treece AE, Que LG, Henao R, Suchindran S, McClain MT, Woods CW, Ginsburg GS, Tsalik EL, Tsalik EL. 2595. Murine Models for the Host Response to Typical and Atypical Pneumonia Open Forum Infectious Diseases. 6: S902-S902. DOI: 10.1093/Ofid/Ofz360.2273  0.426
2019 Ross MH, Henao R, Burke TW, McClain MT, Ginsburg GS, Woods CW, Tsalik EL, Tsalik EL. 1330. Evaluation of Multiple Host Response-Based Strategies to Classify Acute Respiratory Illness Open Forum Infectious Diseases. 6: S481-S481. DOI: 10.1093/Ofid/Ofz360.1194  0.371
2019 Steinbrink JM, Hua K, Myers R, Johnson MD, Seidelman J, Tsalik EL, Tsalik EL, Alexander BD, McClain MT. 2885. A Host Transcriptional Signature for Accurate Diagnosis of Candidemia in the Hospital Setting Open Forum Infectious Diseases. 6: S76-S76. DOI: 10.1093/Ofid/Ofz359.163  0.445
2018 Poore GD, Ko ER, Valente A, Henao R, Sumner K, Hong C, Burke TW, Nichols M, McClain MT, Huang ES, Ginsburg GS, Woods CW, Tsalik EL. A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies. Frontiers in Microbiology. 9: 2957. PMID 30619110 DOI: 10.3389/Fmicb.2018.02957  0.343
2018 Fourati S, Talla A, Mahmoudian M, Burkhart JG, Klén R, Henao R, Yu T, Aydın Z, Yeung KY, Ahsen ME, Almugbel R, Jahandideh S, Liang X, Nordling TEM, Shiga M, ... ... Tsalik EL, et al. A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection. Nature Communications. 9: 4418. PMID 30356117 DOI: 10.1038/S41467-018-06735-8  0.34
2018 Lydon EC, Ko ER, Tsalik EL. The host response as a tool for infectious disease diagnosis and management. Expert Review of Molecular Diagnostics. PMID 29939801 DOI: 10.1080/14737159.2018.1493378  0.382
2018 Dela Cruz CS, Wunderink RG, Christiani DC, Cormier SA, Crothers K, Doerschuk CM, Evans SE, Goldstein DR, Khatri P, Kobzik L, Kolls JK, Levy BD, Metersky ML, Niederman MS, Nusrat R, ... ... Tsalik EL, et al. Future Research Directions in Pneumonia: NHLBI Working Group Report. American Journal of Respiratory and Critical Care Medicine. PMID 29546996 DOI: 10.1164/Rccm.201801-0139Ws  0.364
2018 Sweeney TE, Perumal TM, Henao R, Nichols M, Howrylak JA, Choi AM, Bermejo-Martin JF, Almansa R, Tamayo E, Davenport EE, Burnham KL, Hinds CJ, Knight JC, Woods CW, Kingsmore SF, ... ... Tsalik EL, et al. A community approach to mortality prediction in sepsis via gene expression analysis. Nature Communications. 9: 694. PMID 29449546 DOI: 10.1038/S41467-018-03078-2  0.321
2018 Tsalik EL, Bonomo RA, Fowler VG. New Molecular Diagnostic Approaches to Bacterial Infections and Antibacterial Resistance. Annual Review of Medicine. 69: 379-394. PMID 29414265 DOI: 10.1146/Annurev-Med-052716-030320  0.404
2018 Gayani Tillekeratne L, Suchindran S, Ko E, Petzold E, Bodinayake CK, Nagahawatte A, Devasiri V, Kurukulasooriya R, Reller ME, Nicholson BP, Burke T, Mcclain MT, Tsalik EL, Henao R, Ginsburg GS, et al. 2018. Host Gene Expression Classifiers Distinguish Bacterial and Viral Infections in Sri Lankan Patients with Acute Febrile Respiratory Illness Open Forum Infectious Diseases. 5: S588-S588. DOI: 10.1093/Ofid/Ofy210.1674  0.415
2018 Lydon E, Bullard C, Aydin M, Better O, Mazur A, Mcclain MT, Ginsburg GS, Woods CW, Burke T, Henao R, Tsalik EL. 2015. Host Gene Expression Identifies Infectious Triggers of Asthma Exacerbation Open Forum Infectious Diseases. 5: S587-S587. DOI: 10.1093/Ofid/Ofy210.1671  0.318
2018 Lydon E, Bullard C, Aydin M, Better O, Mazur A, Mcclain MT, Ginsburg GS, Woods CW, Burke T, Henao R, Tsalik EL. 2014. TLDA Validation of a Host Response Signature to Discriminate Bacterial, Viral, and Non-infectious Causes of Illness Open Forum Infectious Diseases. 5: S587-S587. DOI: 10.1093/Ofid/Ofy210.1670  0.361
2018 Tsalik EL, Henao R, Aydin M, Bullard C, Montgomery J, Nawrocki J, Deneris M, Gritzen C, Jones J, Crisp R, Mcclain MT, Burke T, Ginsburg GS, Hemmert A, Woods CW. 2012. FilmArray® Measurement of Host Response Signatures RapidLy Discriminates Viral, Bacterial, and Non-infectious Etiologies of Illness Open Forum Infectious Diseases. 5: S586-S586. DOI: 10.1093/Ofid/Ofy210.1668  0.346
2017 Yan Q, Ahn SH, Medie FM, Sharma-Kuinkel BK, Park LP, Scott WK, Deshmukh H, Tsalik EL, Cyr DD, Woods CW, Yu CA, Adams C, Qi R, Hansen B, Fowler VG. Candidate genes on murine chromosome 8 are associated with susceptibility to Staphylococcus aureus infection in mice and are involved with Staphylococcus aureus septicemia in humans. Plos One. 12: e0179033. PMID 28594911 DOI: 10.1371/Journal.Pone.0179033  0.327
2017 Tsalik EL, Petzold E, Kreiswirth BN, Bonomo RA, Banerjee R, Lautenbach E, Evans SR, Hanson KE, Klausner JD, Patel R. Advancing Diagnostics to Address Antibacterial Resistance: The Diagnostics and Devices Committee of the Antibacterial Resistance Leadership Group. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 64: S41-S47. PMID 28350903 DOI: 10.1093/Cid/Ciw831  0.332
2017 Wang L, Ko ER, Gilchrist JJ, Pittman KJ, Rautanen A, Pirinen M, Thompson JW, Dubois LG, Langley RJ, Jaslow SL, Salinas RE, Rouse DC, Moseley MA, Mwarumba S, Njuguna P, ... ... Tsalik EL, et al. Human genetic and metabolite variation reveals that methylthioadenosine is a prognostic biomarker and an inflammatory regulator in sepsis. Science Advances. 3: e1602096. PMID 28345042 DOI: 10.1126/Sciadv.1602096  0.358
2017 Burke TW, Henao R, Soderblom E, Tsalik EL, Thompson JW, McClain MT, Nichols M, Nicholson BP, Veldman T, Lucas JE, Moseley MA, Turner RB, Lambkin-Williams R, Hero AO, Woods CW, et al. Nasopharyngeal Protein Biomarkers of Acute Respiratory Virus Infection. Ebiomedicine. PMID 28238698 DOI: 10.1016/J.Ebiom.2017.02.015  0.402
2016 Patel R, Tsalik EL, Petzold E, Fowler VG, Klausner JD, Evans S. MASTERMIND - Bringing Microbial Diagnostics to the Clinic. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 27927867 DOI: 10.1093/Cid/Ciw788  0.341
2016 Holcomb ZE, Tsalik EL, Woods CW, McClain MT. Host-based Peripheral Blood Gene Expression Analysis for the Diagnosis of Infectious Diseases. Journal of Clinical Microbiology. PMID 27795332 DOI: 10.1128/Jcm.01057-16  0.407
2016 McClain MT, Nicholson BP, Park LP, Liu TY, Hero AO, Tsalik EL, Zaas AK, Veldman T, Hudson LL, Lambkin-Williams R, Gilbert A, Burke T, Nichols M, Ginsburg GS, Woods CW. A Genomic Signature of Influenza Infection Shows Potential for Presymptomatic Detection, Guiding Early Therapy, and Monitoring Clinical Responses. Open Forum Infectious Diseases. 3: ofw007. PMID 26933666 DOI: 10.1093/Ofid/Ofw007  0.366
2016 Tsalik EL, Henao R, Nichols M, Burke T, Ko ER, McClain MT, Hudson LL, Mazur A, Freeman DH, Veldman T, Langley RJ, Quackenbush EB, Glickman SW, Cairns CB, Jaehne AK, et al. Host gene expression classifiers diagnose acute respiratory illness etiology. Science Translational Medicine. 8: 322ra11. PMID 26791949 DOI: 10.1126/Scitranslmed.Aad6873  0.453
2016 Yang WE, Suchindran S, Nicholson BP, McClain MT, Burke T, Ginsburg GS, Harro CD, Chakraborty S, Sack DA, Woods CW, Tsalik EL. Transcriptomic Analysis of the Host Response and Innate Resilience to Enterotoxigenic Escherichia coli Infection in Humans. The Journal of Infectious Diseases. PMID 26787651 DOI: 10.1093/Infdis/Jiv593  0.389
2016 McClain MT, Woods CW, Tsalik EL, Ginsburg GS, Nicholson BP, Burke T, Hudson L, Veldman T, Better O, Dobos S, Suchindran S, Nichols M, Valente A, Park L, Henao R. Host Transcriptomic Signatures for Early Diagnosis of Acute Respiratory Viral Infection in a University-Based Index-Cluster Cohort Open Forum Infectious Diseases. 3. DOI: 10.1093/Ofid/Ofw194.70  0.358
2015 Tsalik EL, Li Y, Hudson LL, Chu VH, Himmel T, Limkakeng AT, Katz JN, Glickman SW, McClain MT, Welty-Wolf KE, Fowler VG, Ginsburg GS, Woods CW, Reed SD. Potential Cost-effectiveness of Early Identification of Hospital-acquired Infection in Critically Ill Patients. Annals of the American Thoracic Society. PMID 26700878 DOI: 10.1513/Annalsats.201504-205Oc  0.351
2015 McClain MT, Henao R, Williams J, Nicholson B, Veldman T, Hudson L, Tsalik EL, Lambkin-Williams R, Gilbert A, Mann A, Ginsburg GS, Woods CW. Differential evolution of peripheral cytokine levels in symptomatic and asymptomatic responses to experimental influenza virus challenge. Clinical and Experimental Immunology. PMID 26506932 DOI: 10.1111/Cei.12736  0.334
2015 Ruopp M, Chiswell K, Thaden JT, Merchant K, Tsalik EL. Respiratory Tract Infection Clinical Trials from 2007-2012: A Systematic Review of ClinicalTrials.gov. Annals of the American Thoracic Society. PMID 26360527 DOI: 10.1513/Annalsats.201505-291Oc  0.368
2015 Ko ER, Yang WE, McClain MT, Woods CW, Ginsburg GS, Tsalik EL. What was old is new again: using the host response to diagnose infectious disease. Expert Review of Molecular Diagnostics. 1-16. PMID 26145249 DOI: 10.1586/14737159.2015.1059278  0.37
2015 Tsalik EL, McClain M, Zaas AK. Moving toward prime time: host signatures for diagnosis of respiratory infections. The Journal of Infectious Diseases. 212: 173-5. PMID 25637349 DOI: 10.1093/Infdis/Jiv032  0.365
2015 Tsalik EL. Seq and the city Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aaa5547  0.306
2015 Yang WE, Suchindran S, Nicholson BP, McClain MT, Burke T, Ginsburg GS, Harro CD, Chakraborty S, Sack DA, Woods CW, Tsalik EL. Transcriptomic Analysis of the Host Response to Enterotoxigenic E. coli (ETEC) Infection in Humans Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv133.594  0.341
2015 Yan Q, Ahn S, Sharma-Kuinkel BK, Tsalik EL, Cyr DD, Woods CW, Thaden JT, Qi R, Hu M, Ruffin F, Hecker E, Fowler VG. Crif1 Is Associated With Susceptibility to Staphylococcus aureus Infection Through Regulating Host Cell Apoptosis Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv131.67  0.338
2015 Yang WE, Woods CW, Tsalik EL. Host-based diagnostics for detection and prognosis of infectious diseases Methods in Microbiology. DOI: 10.1016/Bs.Mim.2015.06.001  0.378
2014 Tsalik EL, Langley RJ, Dinwiddie DL, Miller NA, Yoo B, van Velkinburgh JC, Smith LD, Thiffault I, Jaehne AK, Valente AM, Henao R, Yuan X, Glickman SW, Rice BJ, McClain MT, et al. An integrated transcriptome and expressed variant analysis of sepsis survival and death. Genome Medicine. 6: 111. PMID 25538794 DOI: 10.1186/S13073-014-0111-5  0.375
2014 Zaas AK, Garner BH, Tsalik EL, Burke T, Woods CW, Ginsburg GS. The current epidemiology and clinical decisions surrounding acute respiratory infections. Trends in Molecular Medicine. 20: 579-88. PMID 25201713 DOI: 10.1016/J.Molmed.2014.08.001  0.363
2014 Langley RJ, Tipper JL, Bruse S, Baron RM, Tsalik EL, Huntley J, Rogers AJ, Jaramillo RJ, O'Donnell D, Mega WM, Keaton M, Kensicki E, Gazourian L, Fredenburgh LE, Massaro AF, et al. Integrative "omic" analysis of experimental bacteremia identifies a metabolic signature that distinguishes human sepsis from systemic inflammatory response syndromes. American Journal of Respiratory and Critical Care Medicine. 190: 445-55. PMID 25054455 DOI: 10.1164/Rccm.201404-0624Oc  0.314
2014 Yan Q, Sharma-Kuinkel BK, Deshmukh H, Tsalik EL, Cyr DD, Lucas J, Woods CW, Scott WK, Sempowski GD, Thaden JT, Thaden J, Rude TH, Ahn SH, Fowler VG. Dusp3 and Psme3 are associated with murine susceptibility to Staphylococcus aureus infection and human sepsis. Plos Pathogens. 10: e1004149. PMID 24901344 DOI: 10.1371/Journal.Ppat.1004149  0.356
2014 Tsalik EL. Sequence-specific antibiotics Science Translational Medicine. 6: 259ec183. DOI: 10.1126/Scitranslmed.Aaa0896  0.345
2014 Tsalik EL. The microbial origins of obesity Science Translational Medicine. 6. DOI: 10.1126/Scitranslmed.3010265  0.311
2014 Tsalik EL. Cardiovascular genetics: All systems point to TREML4 Science Translational Medicine. 6. DOI: 10.1126/Scitranslmed.3009814  0.323
2013 Zaas AK, Burke T, Chen M, McClain M, Nicholson B, Veldman T, Tsalik EL, Fowler V, Rivers EP, Otero R, Kingsmore SF, Voora D, Lucas J, Hero AO, Carin L, et al. A host-based RT-PCR gene expression signature to identify acute respiratory viral infection. Science Translational Medicine. 5: 203ra126. PMID 24048524 DOI: 10.1126/Scitranslmed.3006280  0.423
2013 Ahn SH, Tsalik EL, Cyr DD, Zhang Y, van Velkinburgh JC, Langley RJ, Glickman SW, Cairns CB, Zaas AK, Rivers EP, Otero RM, Veldman T, Kingsmore SF, Lucas J, Woods CW, et al. Gene expression-based classifiers identify Staphylococcus aureus infection in mice and humans. Plos One. 8: e48979. PMID 23326304 DOI: 10.1371/Journal.Pone.0048979  0.393
2010 Glickman SW, Cairns CB, Otero RM, Woods CW, Tsalik EL, Langley RJ, van Velkinburgh JC, Park LP, Glickman LT, Fowler VG, Kingsmore SF, Rivers EP. Disease progression in hemodynamically stable patients presenting to the emergency department with sepsis. Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 17: 383-90. PMID 20370777 DOI: 10.1111/J.1553-2712.2010.00664.X  0.331
2010 Tsalik EL, Jones D, Nicholson B, Waring L, Liesenfeld O, Park LP, Glickman SW, Caram LB, Langley RJ, van Velkinburgh JC, Cairns CB, Rivers EP, Otero RM, Kingsmore SF, Lalani T, et al. Multiplex PCR to diagnose bloodstream infections in patients admitted from the emergency department with sepsis. Journal of Clinical Microbiology. 48: 26-33. PMID 19846634 DOI: 10.1128/Jcm.01447-09  0.379
2009 Tsalik EL, Woods CW. Sepsis redefined: the search for surrogate markers. International Journal of Antimicrobial Agents. 34: S16-20. PMID 19931810 DOI: 10.1016/S0924-8579(09)70560-6  0.328
2003 Tsalik EL, Niacaris T, Wenick AS, Pau K, Avery L, Hobert O. LIM homeobox gene-dependent expression of biogenic amine receptors in restricted regions of the C. elegans nervous system. Developmental Biology. 263: 81-102. PMID 14568548 DOI: 10.1016/S0012-1606(03)00447-0  0.656
2003 Tsalik EL, Hobert O. Functional mapping of neurons that control locomotory behavior in Caenorhabditis elegans. Journal of Neurobiology. 56: 178-97. PMID 12838583 DOI: 10.1002/Neu.10245  0.484
2001 Altun-Gultekin Z, Andachi Y, Tsalik EL, Pilgrim D, Kohara Y, Hobert O. A regulatory cascade of three homeobox genes, ceh-10, ttx-3 and ceh-23, controls cell fate specification of a defined interneuron class in C. elegans. Development (Cambridge, England). 128: 1951-69. PMID 11493519  0.485
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