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Hillary S. Hayden, Ph.D. - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
Phycology
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Nelson MT, Pope CE, Marsh RL, Wolter DJ, Weiss EJ, Hager KR, Vo AT, Brittnacher MJ, Radey MC, Hayden HS, Eng A, Miller SI, Borenstein E, Hoffman LR. Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles. Cell Reports. 26: 2227-2240.e5. PMID 30784601 DOI: 10.1016/J.Celrep.2019.01.091  0.319
2018 Matamouros S, Hayden HS, Hager KR, Brittnacher MJ, Lachance K, Weiss EJ, Pope CE, Imhaus AF, McNally CP, Borenstein E, Hoffman LR, Miller SI. Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29378945 DOI: 10.1073/Pnas.1714373115  0.319
2016 Brittnacher MJ, Heltshe SL, Hayden HS, Radey MC, Weiss EJ, Damman CJ, Zisman TL, Suskind DL, Miller SI. GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis. Plos One. 11: e0158897. PMID 27391011 DOI: 10.1371/Journal.Pone.0158897  0.42
2016 Hayden HS, Matamouros S, Hager KR, Brittnacher MJ, Rohmer L, Radey MC, Weiss EJ, Kim KB, Jacobs MA, Sims-Day EH, Yue M, Zaidi MB, Schifferli DM, Manning SD, Walson JL, et al. Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress. Mbio. 7. PMID 26956590 DOI: 10.1128/Mbio.00154-16  0.306
2015 Jorth P, Staudinger BJ, Wu X, Hisert KB, Hayden H, Garudathri J, Harding CL, Radey MC, Rezayat A, Bautista G, Berrington WR, Goddard AF, Zheng C, Angermeyer A, Brittnacher MJ, et al. Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs. Cell Host & Microbe. 18: 307-19. PMID 26299432 DOI: 10.1016/J.Chom.2015.07.006  0.329
2015 Gallagher LA, Ramage E, Weiss EJ, Radey M, Hayden HS, Held KG, Huse HK, Zurawski DV, Brittnacher MJ, Manoil C. Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii. Journal of Bacteriology. 197: 2027-35. PMID 25845845 DOI: 10.1128/Jb.00131-15  0.353
2014 Majerczyk CD, Brittnacher MJ, Jacobs MA, Armour CD, Radey MC, Bunt R, Hayden HS, Bydalek R, Greenberg EP. Cross-species comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei quorum-sensing regulons. Journal of Bacteriology. 196: 3862-71. PMID 25182491 DOI: 10.1128/Jb.01974-14  0.35
2012 Svensson K, Sjödin A, Byström M, Granberg M, Brittnacher MJ, Rohmer L, Jacobs MA, Sims-Day EH, Levy R, Zhou Y, Hayden HS, Lim R, Chang J, Guenthener D, Kang A, et al. Genome sequence of Francisella tularensis subspecies holarctica strain FSC200, isolated from a child with tularemia. Journal of Bacteriology. 194: 6965-6. PMID 23209222 DOI: 10.1128/Jb.01040-12  0.33
2012 Hayden HS, Lim R, Brittnacher MJ, Sims EH, Ramage ER, Fong C, Wu Z, Crist E, Chang J, Zhou Y, Radey M, Rohmer L, Haugen E, Gillett W, Wuthiekanun V, et al. Evolution of Burkholderia pseudomallei in recurrent melioidosis. Plos One. 7: e36507. PMID 22615773 DOI: 10.1371/Journal.Pone.0036507  0.344
2011 Brittnacher MJ, Fong C, Hayden HS, Jacobs MA, Radey M, Rohmer L. PGAT: a multistrain analysis resource for microbial genomes. Bioinformatics (Oxford, England). 27: 2429-30. PMID 21765097 DOI: 10.1093/Bioinformatics/Btr418  0.324
2010 Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R, Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell. 143: 837-47. PMID 21111241 DOI: 10.1016/J.Cell.2010.10.027  0.341
2010 Kidd JM, Sampas N, Antonacci F, Graves T, Fulton R, Hayden HS, Alkan C, Malig M, Ventura M, Giannuzzi G, Kallicki J, Anderson P, Tsalenko A, Yamada NA, Tsang P, et al. Characterization of missing human genome sequences and copy-number polymorphic insertions. Nature Methods. 7: 365-71. PMID 20440878 DOI: 10.1038/Nmeth.1451  0.333
2009 Kulasekara BR, Jacobs M, Zhou Y, Wu Z, Sims E, Saenphimmachak C, Rohmer L, Ritchie JM, Radey M, McKevitt M, Freeman TL, Hayden H, Haugen E, Gillett W, Fong C, et al. Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. Infection and Immunity. 77: 3713-21. PMID 19564389 DOI: 10.1128/Iai.00198-09  0.31
2008 Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C, Antonacci F, Haugen E, Zerr T, Yamada NA, Tsang P, Newman TL, et al. Mapping and sequencing of structural variation from eight human genomes. Nature. 453: 56-64. PMID 18451855 DOI: 10.1038/Nature06862  0.332
2008 Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, et al. Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients. Genomics. 91: 530-7. PMID 18445516 DOI: 10.1016/J.Ygeno.2008.02.005  0.346
2008 Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, Cooper GM, Sampas N, Phelps K, Levy R, Morrison VA, Sprague J, Jewett D, Buckley D, et al. Closing gaps in the human genome with fosmid resources generated from multiple individuals. Nature Genetics. 40: 96-101. PMID 18157130 DOI: 10.1038/Ng.2007.34  0.326
2007 Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, Radey M, Guina T, Svensson K, Hayden HS, Jacobs M, Gallagher LA, Manoil C, Ernst RK, Drees B, Buckley D, et al. Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biology. 8: R102. PMID 17550600 DOI: 10.1186/Gb-2007-8-6-R102  0.365
2007 D'Argenio DA, Wu M, Hoffman LR, Kulasekara HD, Déziel E, Smith EE, Nguyen H, Ernst RK, Larson Freeman TJ, Spencer DH, Brittnacher M, Hayden HS, Selgrade S, Klausen M, Goodlett DR, et al. Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients. Molecular Microbiology. 64: 512-33. PMID 17493132 DOI: 10.1111/J.1365-2958.2007.05678.X  0.3
2005 Tuzun E, Sharp AJ, Bailey JA, Kaul R, Morrison VA, Pertz LM, Haugen E, Hayden H, Albertson D, Pinkel D, Olson MV, Eichler EE. Fine-scale structural variation of the human genome. Nature Genetics. 37: 727-32. PMID 15895083 DOI: 10.1038/Ng1562  0.329
2004 Hayden HS, Waaland JR. A molecular systematic study of Ulva (Ulvaceae, Ulvales) from the northeast Pacific Phycologia. 43: 364-382. DOI: 10.2216/I0031-8884-43-4-364.1  0.595
2003 Hayden HS, Blomster J, Maggs CA, Silva PC, Stanhope MJ, Waaland JR. Linnaeus was right all along: Ulva and Enteromorpha are not distinct genera European Journal of Phycology. 38: 277-294. DOI: 10.1080/1364253031000136321  0.607
2002 Hayden HS, Robert Waaland J. Phylogenetic systematics of the Ulvaceae (Ulvales, Ulvophyceae) using chloroplast and nuclear DNA sequences Journal of Phycology. 38: 1200-1212. DOI: 10.1046/J.1529-8817.2002.01167.X  0.364
2000 Hayden H, Waaland J. SYSTEMATICS OF ULVACEAE (ULVOPHYCEAE, CHLOROPHYTA) USING NUCLEAR AND CHLOROPLAST DNA SEQUENCES Journal of Phycology. 36: 29-29. DOI: 10.1046/J.1529-8817.1999.00001-87.X  0.372
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