Peter G. Kennedy, Ph.D. - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
Area:
Marine Ecology

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cantoran A, Maillard F, Baldrian P, Kennedy PG. Defining a core microbial necrobiome associated with decomposing fungal necromass. Fems Microbiology Ecology. 99. PMID 37656873 DOI: 10.1093/femsec/fiad098  0.32
2021 Erlandson SR, Margis R, Ramirez A, Nguyen N, Lofgren L, Liao HL, Vilgalys R, Kennedy PG, Peay KG. Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus Suillus pungens. The New Phytologist. PMID 34668199 DOI: 10.1111/nph.17816  0.722
2021 Pérez-Pazos E, Certano A, Gagne J, Lebeuf R, Siegel N, Nguyen N, Kennedy PG. The slippery nature of ectomycorrhizal host specificity: fungi associated with novel pinoid () and abietoid () hosts. Mycologia. 1-11. PMID 34236933 DOI: 10.1080/00275514.2021.1921525  0.308
2021 Lekberg Y, Arnillas CA, Borer ET, Bullington LS, Fierer N, Kennedy PG, Leff JW, Luis AD, Seabloom EW, Henning JA. Nitrogen and phosphorus fertilization consistently favor pathogenic over mutualistic fungi in grassland soils. Nature Communications. 12: 3484. PMID 34108462 DOI: 10.1038/s41467-021-23605-y  0.317
2021 Maillard F, Kennedy PG, Adamczyk B, Heinonsalo J, Buée M. Root presence modifies the long-term decomposition dynamics of fungal necromass and the associated microbial communities in a boreal forest. Molecular Ecology. PMID 33544953 DOI: 10.1111/mec.15828  0.332
2020 Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, ... ... Kennedy PG, et al. Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi. The New Phytologist. PMID 33355923 DOI: 10.1111/nph.17160  0.742
2020 Kennedy PG, Gagne J, Perez-Pazos E, Lofgren LA, Nguyen NH. Does fungal competitive ability explain host specificity or rarity in ectomycorrhizal symbioses? Plos One. 15: e0234099. PMID 32810132 DOI: 10.1371/Journal.Pone.0234099  0.763
2020 McCormack ML, Kaproth MA, Cavender-Bares J, Carlson E, Hipp AL, Han Y, Kennedy PG. Climate and phylogenetic history structure morphological and architectural trait variation among fine-root orders. The New Phytologist. PMID 32654151 DOI: 10.1111/Nph.16804  0.345
2020 Voitk A, Saar I, Lebeuf R, Kennedy P. The Pseudoomphalina kalchbrenneri complex in North America Botany. 98: 91-101. DOI: 10.1139/Cjb-2019-0011  0.328
2020 Daws SC, Cline LA, Rotenberry J, Sadowsky MJ, Staley C, Dalzell B, Kennedy PG. Do shared traits create the same fates? Examining the link between morphological type and the biogeography of fungal and bacterial communities Fungal Ecology. 46: 100948. DOI: 10.1016/J.Funeco.2020.100948  0.412
2020 Ryan ME, Schreiner KM, Swenson JT, Gagne J, Kennedy PG. Rapid changes in the chemical composition of degrading ectomycorrhizal fungal necromass Fungal Ecology. 45: 100922. DOI: 10.1016/J.Funeco.2020.100922  0.341
2020 Maillard F, Andrews E, Moran M, Kennedy PG, Bloem SJV, Schilling JS. Stem-inhabiting fungal communities differ between intact and snapped trees after hurricane Maria in a Puerto Rican tropical dry forest Forest Ecology and Management. 475: 118350. DOI: 10.1016/J.Foreco.2020.118350  0.397
2019 Maillard F, Schilling J, Andrews E, Schreiner K, Kennedy P. Functional convergence in the decomposition of fungal necromass in soil and wood. Fems Microbiology Ecology. PMID 31868883 DOI: 10.1093/Femsec/Fiz209  0.42
2019 Zanne AE, Abarenkov K, Afkhami ME, Aguilar-Trigueros CA, Bates S, Bhatnagar JM, Busby PE, Christian N, Cornwell WK, Crowther TW, Flores-Moreno H, Floudas D, Gazis R, Hibbett D, Kennedy P, et al. Fungal functional ecology: bringing a trait-based approach to plant-associated fungi. Biological Reviews of the Cambridge Philosophical Society. PMID 31763752 DOI: 10.1111/Brv.12570  0.387
2019 Fernandez CW, See CR, Kennedy PG. Decelerated carbon cycling by ectomycorrhizal fungi is controlled by substrate quality and community composition. The New Phytologist. PMID 31622518 DOI: 10.1111/Nph.16269  0.404
2019 Grossman JJ, Butterfield AJ, Cavender-Bares J, Hobbie SE, Reich PB, Gutknecht J, Kennedy PG. Non-symbiotic soil microbes are more strongly influenced by altered tree biodiversity than arbuscular mycorrhizal fungi during initial forest establishment. Fems Microbiology Ecology. PMID 31437281 DOI: 10.1093/Femsec/Fiz134  0.5
2019 See CR, Luke McCormack M, Hobbie SE, Flores-Moreno H, Silver WL, Kennedy PG. Global patterns in fine root decomposition: climate, chemistry, mycorrhizal association and woodiness. Ecology Letters. PMID 30891910 DOI: 10.1111/Ele.13248  0.398
2019 Bogar L, Peay K, Kornfeld A, Huggins J, Hortal S, Anderson I, Kennedy P. Plant-mediated partner discrimination in ectomycorrhizal mutualisms. Mycorrhiza. PMID 30617861 DOI: 10.1007/S00572-018-00879-7  0.432
2019 Fernandez CW, Heckman K, Kolka R, Kennedy PG. Melanin mitigates the accelerated decay of mycorrhizal necromass with peatland warming. Ecology Letters. PMID 30609141 DOI: 10.1111/Ele.13209  0.355
2018 Lofgren LA, Uehling JK, Branco S, Bruns TD, Martin F, Kennedy PG. Genome-based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles. Molecular Ecology. PMID 30582650 DOI: 10.1111/Mec.14995  0.734
2018 Nilsson RH, Larsson KH, Taylor AFS, Bengtsson-Palme J, Jeppesen TS, Schigel D, Kennedy P, Picard K, Glöckner FO, Tedersoo L, Saar I, Kõljalg U, Abarenkov K. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research. PMID 30371820 DOI: 10.1093/Nar/Gky1022  0.346
2018 Kennedy PG, Mielke LA, Nguyen NH. Ecological responses to forest age, habitat, and host vary by mycorrhizal type in boreal peatlands. Mycorrhiza. PMID 29504037 DOI: 10.1007/S00572-018-0821-4  0.467
2018 Lofgren L, Nguyen NH, Kennedy PG. Ectomycorrhizal host specificity in a changing world: can legacy effects explain anomalous current associations? The New Phytologist. PMID 29411381 DOI: 10.1111/Nph.15008  0.765
2018 Fernandez CW, Kennedy PG. Melanization of mycorrhizal fungal necromass structures microbial decomposer communities Journal of Ecology. 106: 468-479. DOI: 10.1111/1365-2745.12920  0.318
2018 Certano AK, Fernandez CW, Heckman KA, Kennedy PG. The afterlife effects of fungal morphology: Contrasting decomposition rates between diffuse and rhizomorphic necromass Soil Biology and Biochemistry. 126: 76-81. DOI: 10.1016/J.Soilbio.2018.08.002  0.351
2018 Cline LC, Huggins JA, Hobbie SE, Kennedy PG. Organic nitrogen addition suppresses fungal richness and alters community composition in temperate forest soils Soil Biology and Biochemistry. 125: 222-230. DOI: 10.1016/J.Soilbio.2018.07.008  0.422
2017 Põlme S, Bahram M, Jacquemyn H, Kennedy P, Kohout P, Moora M, Oja J, Öpik M, Pecoraro L, Tedersoo L. Host preference and network properties in biotrophic plant-fungal associations. The New Phytologist. PMID 29165806 DOI: 10.1111/Nph.14895  0.408
2017 Ballhorn DJ, Elias JD, Balkan MA, Fordyce RF, Kennedy PG. Colonization by nitrogen-fixing Frankia bacteria causes short-term increases in herbivore susceptibility in red alder (Alnus rubra) seedlings. Oecologia. PMID 28528390 DOI: 10.1007/S00442-017-3888-2  0.349
2017 Cline LC, Schilling JS, Menke J, Groenhof E, Kennedy PG. Ecological and functional effects of fungal endophytes on wood decomposition Functional Ecology. 32: 181-191. DOI: 10.1111/1365-2435.12949  0.435
2016 Nguyen N, Vellinga EC, Bruns TD, Kennedy P. Phylogenetic assessment of global Suillus ITS sequences supports morphologically defined species and reveals synonymous and undescribed taxa. Mycologia. PMID 27760855 DOI: 10.3852/16-106  0.368
2016 Fernandez CW, Nguyen NH, Stefanski A, Han Y, Hobbie SE, Montgomery RA, Reich PB, Kennedy PG. Ectomycorrhizal fungal response to warming is linked to poor host performance at the boreal-temperate ecotone. Global Change Biology. PMID 27658686 DOI: 10.1111/Gcb.13510  0.476
2016 Peay KG, Kennedy PG, Talbot JM. Dimensions of biodiversity in the Earth mycobiome. Nature Reviews. Microbiology. 14: 434-47. PMID 27296482 DOI: 10.1038/Nrmicro.2016.59  0.42
2016 Nguyen NH, Williams L, Vincent JB, Stefanski A, Cavender-Bares J, Messier C, Paquette A, Gravel D, Reich PB, Kennedy PG. Ectomycorrhizal and saprotrophic fungal diversity are linked to different tree community attributes in a field-based tree experiment. Molecular Ecology. PMID 27284759 DOI: 10.1111/Mec.13719  0.493
2016 Song Z, Kennedy PG, Liew FJ, Schilling JS. Fungal endophytes as priority colonizers initiating wood decomposition Functional Ecology. 31: 407-418. DOI: 10.1111/1365-2435.12735  0.309
2015 Rineau F, Stas J, Nguyen NH, Kuyper TW, Carleer R, Vangronsveld J, Colpaert JV, Kennedy PG. Soil organic nitrogen availability predicts ectomycorrhizal fungal protein degradation ability. Applied and Environmental Microbiology. PMID 26682855 DOI: 10.1128/Aem.03191-15  0.377
2015 Mujic AB, Durall DM, Spatafora JW, Kennedy PG. Competitive avoidance not edaphic specialization drives vertical niche partitioning among sister species of ectomycorrhizal fungi. The New Phytologist. PMID 26391726 DOI: 10.1111/Nph.13677  0.359
2015 Fernandez CW, Kennedy PG. Revisiting the 'Gadgil effect': do interguild fungal interactions control carbon cycling in forest soils? The New Phytologist. PMID 26365785 DOI: 10.1111/Nph.13648  0.391
2015 Song Z, Schlatter D, Kennedy P, Kinkel LL, Kistler HC, Nguyen N, Bates ST. Effort versus Reward: Preparing Samples for Fungal Community Characterization in High-Throughput Sequencing Surveys of Soils. Plos One. 10: e0127234. PMID 25974078 DOI: 10.1371/Journal.Pone.0127234  0.357
2015 Fernandez CW, Kennedy PG. Moving beyond the black-box: fungal traits, community structure, and carbon sequestration in forest soils. The New Phytologist. 205: 1378-80. PMID 25645716 DOI: 10.1111/Nph.13289  0.353
2015 Kennedy P, Stajich J. Twenty-first century mycology: a diverse, collaborative, and highly relevant science. The New Phytologist. 205: 23-6. PMID 25427217 DOI: 10.1111/Nph.13165  0.582
2015 Bogar LM, Dickie IA, Kennedy PG. Testing the co-invasion hypothesis: Ectomycorrhizal fungal communities on Alnus glutinosa and Salix fragilis in New Zealand Diversity and Distributions. 21: 268-278. DOI: 10.1111/Ddi.12304  0.446
2015 Nguyen NH, Song Z, Bates ST, Branco S, Tedersoo L, Menke J, Schilling JS, Kennedy PG. FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild Fungal Ecology. DOI: 10.1016/J.Funeco.2015.06.006  0.456
2014 Kennedy P, Nguyen N, Cohen H, Peay K. Missing checkerboards? An absence of competitive signal in Alnus-associated ectomycorrhizal fungal communities. Peerj. 2: e686. PMID 25548729 DOI: 10.7717/Peerj.686  0.42
2014 Walker JK, Cohen H, Higgins LM, Kennedy PG. Testing the link between community structure and function for ectomycorrhizal fungi involved in a global tripartite symbiosis. The New Phytologist. 202: 287-96. PMID 24320607 DOI: 10.1111/Nph.12638  0.457
2014 Huggins JA, Talbot J, Gardes M, Kennedy PG. Unlocking environmental keys to host specificity: Differential tolerance of acidity and nitrate byAlnus-associated ectomycorrhizal fungi Fungal Ecology. 12: 52-61. DOI: 10.1016/J.Funeco.2014.04.003  0.388
2013 Põlme S, Bahram M, Yamanaka T, Nara K, Dai YC, Grebenc T, Kraigher H, Toivonen M, Wang PH, Matsuda Y, Naadel T, Kennedy PG, Kõljalg U, Tedersoo L. Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale. The New Phytologist. 198: 1239-49. PMID 23421531 DOI: 10.1111/Nph.12170  0.453
2013 Bogar LM, Kennedy PG. New wrinkles in an old paradigm: neighborhood effects can modify the structure and specificity of Alnus-associated ectomycorrhizal fungal communities. Fems Microbiology Ecology. 83: 767-77. PMID 23078526 DOI: 10.1111/1574-6941.12032  0.409
2012 Kennedy PG, Smith DP, Horton TR, Molina RJ. Arbutus menziesii (Ericaceae) facilitates regeneration dynamics in mixed evergreen forests by promoting mycorrhizal fungal diversity and host connectivity. American Journal of Botany. 99: 1691-701. PMID 22986083 DOI: 10.3732/Ajb.1200277  0.478
2012 Kennedy PG, Matheny PB, Ryberg KM, Henkel TW, Uehling JK, Smith ME. Scaling up: examining the macroecology of ectomycorrhizal fungi. Molecular Ecology. 21: 4151-4. PMID 22924792 DOI: 10.1111/J.1365-294X.2012.05703.X  0.431
2012 Higgins LM, Kennedy PG. Symbiotic Frankia bacteria in Alnus forests in Mexico and the United States of America: Is geographic location a good predictor of assemblage structure? Botany. 90: 423-431. DOI: 10.1139/B2012-006  0.318
2011 Kennedy PG, Higgins LM, Rogers RH, Weber MG. Colonization-competition tradeoffs as a mechanism driving successional dynamics in ectomycorrhizal fungal communities. Plos One. 6: e25126. PMID 21949867 DOI: 10.1371/Journal.Pone.0025126  0.438
2011 Kennedy PG, Garibay-Orijel R, Higgins LM, Angeles-Arguiz R. Ectomycorrhizal fungi in Mexican Alnus forests support the host co-migration hypothesis and continental-scale patterns in phylogeography. Mycorrhiza. 21: 559-68. PMID 21331794 DOI: 10.1007/S00572-011-0366-2  0.455
2011 Lipus A, Kennedy PG. Frankia assemblages associated with alnus rubra and alnus viridis are strongly influenced by host species identity International Journal of Plant Sciences. 172: 403-410. DOI: 10.1086/658156  0.443
2011 Peay KG, Kennedy PG, Bruns TD. Rethinking ectomycorrhizal succession: Are root density and hyphal exploration types drivers of spatial and temporal zonation? Fungal Ecology. 4: 233-240. DOI: 10.1016/J.Funeco.2010.09.010  0.361
2010 Kennedy P. Ectomycorrhizal fungi and interspecific competition: Species interactions, community structure, coexistence mechanisms, and future research directions New Phytologist. 187: 895-910. PMID 20673286 DOI: 10.1111/J.1469-8137.2010.03399.X  0.417
2010 Peay KG, Kennedy PG, Davies SJ, Tan S, Bruns TD. Potential link between plant and fungal distributions in a dipterocarp rainforest: community and phylogenetic structure of tropical ectomycorrhizal fungi across a plant and soil ecotone. The New Phytologist. 185: 529-42. PMID 19878464 DOI: 10.1111/J.1469-8137.2009.03075.X  0.487
2010 Kennedy PG, Schouboe JL, Rogers RH, Weber MG, Nadkarni NM. Frankia and Alnus rubra canopy roots: An assessment of genetic diversity, propagule availability, and effects on soil nitrogen Microbial Ecology. 59: 214-220. PMID 19787390 DOI: 10.1007/S00248-009-9587-8  0.386
2010 Kennedy PG, Hill LT. A molecular and phylogenetic analysis of the structure and specificity of Alnus rubra ectomycorrhizal assemblages Fungal Ecology. 3: 195-204. DOI: 10.1016/J.Funeco.2009.08.005  0.385
2010 Kennedy PG, Weber MG, Bluhm AA. Frankia bacteria in Alnus rubra forests: Genetic diversity and determinants of assemblage structure Plant and Soil. 335: 479-492. DOI: 10.1007/S11104-010-0436-9  0.361
2009 Kennedy PG, Peay KG, Bruns TD. Root tip competition among ectomycorrhizal fungi: are priority effects a rule or an exception? Ecology. 90: 2098-107. PMID 19739372 DOI: 10.1890/08-1291.1  0.399
2008 Bruns TD, Blackwell M, Edwards I, Taylor AFS, Horton T, Zhang N, Kõljalg U, May G, Kuyper TW, Bever JD, Gilbert G, Taylor JW, DeSantis TZ, Pringle A, Borneman J, ... ... Kennedy P, et al. Preserving accuracy in GenBank Science. 319: 1616. PMID 18356505 DOI: 10.1126/Science.319.5870.1616A  0.496
2008 Peay KG, Kennedy PG, Bruns TD. Fungal community ecology: A hybrid beast with a molecular master Bioscience. 58: 799-810. DOI: 10.1641/B580907  0.395
2007 Peay KG, Bruns TD, Kennedy PG, Bergemann SE, Garbelotto M. A strong species-area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi. Ecology Letters. 10: 470-80. PMID 17498146 DOI: 10.1111/J.1461-0248.2007.01035.X  0.449
2007 Kennedy PG, Bergemann SE, Hortal S, Bruns TD. Determining the outcome of field-based competition between two Rhizopogon species using real-time PCR. Molecular Ecology. 16: 881-90. PMID 17284218 DOI: 10.1111/J.1365-294X.2006.03191.X  0.403
2007 Sousa WP, Kennedy PG, Mitchell BJ, Ordóñez L BM. Supply-side ecology in mangroves: Do propagule dispersal and seedling establishment explain forest structure? Ecological Monographs. 77: 53-76. DOI: 10.1890/05-1935  0.721
2007 Kennedy PG, Hortal S, Bergemann SE, Bruns TD. Competitive interactions among three ectomycorrhizal fungi and their relation to host plant performance Journal of Ecology. 95: 1338-1345. DOI: 10.1111/J.1365-2745.2007.01306.X  0.396
2007 Palomino M, Kennedy PG, Simms EL. Nickel hyperaccumulation as an anti-herbivore trait: Considering the role of tolerance to damage Plant and Soil. 293: 189-195. DOI: 10.1007/S11104-007-9236-2  0.343
2007 Kennedy PG, Peay KG. Different soil moisture conditions change the outcome of the ectomycorrhizal symbiosis between Rhizopogon species and Pinus muricata Plant and Soil. 291: 155-165. DOI: 10.1007/S11104-006-9183-3  0.397
2006 Rusca TA, Kennedy PG, Bruns TD. The effect of different pine hosts on the sampling of Rhizopogon spore banks in five Eastern Sierra Nevada forests. The New Phytologist. 170: 551-60. PMID 16626476 DOI: 10.1111/J.1469-8137.2006.01689.X  0.404
2006 Kennedy PG, Sousa WP. Forest encroachment into a Californian grassland: examining the simultaneous effects of facilitation and competition on tree seedling recruitment. Oecologia. 148: 464-74. PMID 16496180 DOI: 10.1007/S00442-006-0382-7  0.721
2005 Kennedy PG, Bruns TD. Priority effects determine the outcome of ectomycorrhizal competition between two Rhizopogon species colonizing Pinus muricata seedlings. The New Phytologist. 166: 631-8. PMID 15819925 DOI: 10.1111/J.1469-8137.2005.01355.X  0.32
2005 Kennedy PG. POST-DISPERSAL SEED PREDATION VARIES BY HABITAT NOT ACORN SIZE FOR QUERCUS CHRYSOLEPIS (FAGACEAE) AND LITHOCARPUS DENSIFLORA (FAGACEAE) IN CENTRAL COASTAL CALIFORNIA MadroñO. 52: 30-34. DOI: 10.3120/0024-9637(2005)52[30:Pspvbh]2.0.Co;2  0.41
2005 Kennedy PG, Diaz JM. THE INFLUENCE OF SEED DISPERSAL AND PREDATION ON FOREST ENCROACHMENT INTO A CALIFORNIA GRASSLAND MadroñO. 52: 21-29. DOI: 10.3120/0024-9637(2005)52[21:Tiosda]2.0.Co;2  0.396
2004 Kennedy PG, Hausmann NJ, Wenk EH, Dawson TE. The importance of seed reserves for seedling performance: an integrated approach using morphological, physiological, and stable isotope techniques. Oecologia. 141: 547-54. PMID 15338415 DOI: 10.1007/S00442-004-1686-0  0.726
2003 Sousa WP, Kennedy PG, Mitchell BJ. Propagule size and predispersal damage by insects affect establishment and early growth of mangrove seedlings. Oecologia. 135: 564-75. PMID 12684857 DOI: 10.1007/S00442-003-1237-0  0.699
2003 Kennedy PG, Izzo AD, Bruns TD. There is high potential for the formation of common mycorrhizal networks between understorey and canopy trees in a mixed evergreen forest Journal of Ecology. 91: 1071-1080. DOI: 10.1046/J.1365-2745.2003.00829.X  0.451
2001 Kennedy PG, Quinn T. Understory plant establishment on old-growth stumps and the forest floor in western Washington Forest Ecology and Management. 154: 193-200. DOI: 10.1016/S0378-1127(00)00622-8  0.438
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