| Year |
Citation |
Score |
| 2023 |
Evans-Yamamoto D, Dubé AK, Saha G, Plante S, Bradley D, Gagnon-Arsenault I, Landry CR. Parallel nonfunctionalization of CK1δ/ε kinase ohnologs following a whole-genome duplication event. Molecular Biology and Evolution. PMID 37979156 DOI: 10.1093/molbev/msad246 |
0.354 |
|
| 2023 |
Bradley D, Hogrebe A, Dandage R, Dubé AK, Leutert M, Dionne U, Chang A, Villén J, Landry CR. The fitness cost of spurious phosphorylation. Biorxiv : the Preprint Server For Biology. PMID 37873463 DOI: 10.1101/2023.10.08.561337 |
0.327 |
|
| 2023 |
Evans-Yamamoto D, Dubé AK, Saha G, Plante S, Bradley D, Gagnon-Arsenault I, Landry CR. Parallel nonfunctionalization of CK1δ/ε kinase ohnologs following a whole-genome duplication event. Biorxiv : the Preprint Server For Biology. PMID 37873368 DOI: 10.1101/2023.10.02.560513 |
0.357 |
|
| 2023 |
Aubé S, Nielly-Thibault L, Landry CR. Evolutionary trade-off and mutational bias could favor transcriptional over translational divergence within paralog pairs. Plos Genetics. 19: e1010756. PMID 37235586 DOI: 10.1371/journal.pgen.1010756 |
0.302 |
|
| 2022 |
Dubé AK, Dandage R, Dibyachintan S, Dionne U, Després PC, Landry CR. Deep Mutational Scanning of Protein-Protein Interactions Between Partners Expressed from Their Endogenous Loci In Vivo. Methods in Molecular Biology (Clifton, N.J.). 2477: 237-259. PMID 35524121 DOI: 10.1007/978-1-0716-2257-5_14 |
0.305 |
|
| 2022 |
Evans-Yamamoto D, Rouleau FD, Nanda P, Makanae K, Liu Y, Després PC, Matsuo H, Seki M, Dubé AK, Ascencio D, Yachie N, Landry CR. Barcode fusion genetics-protein-fragment complementation assay (BFG-PCA): tools and resources that expand the potential for binary protein interaction discovery. Nucleic Acids Research. PMID 35137167 DOI: 10.1093/nar/gkac045 |
0.347 |
|
| 2022 |
Diss G, Landry CR. Corrigendum: Combining the Dihydrofolate Reductase Protein-Fragment Complementation Assay with Gene Deletions to Establish Genotype-to-Phenotype Maps of Protein Complexes and Interaction Networks. Cold Spring Harbor Protocols. 2022: pdb.corr107813. PMID 34983864 DOI: 10.1101/pdb.corr107813 |
0.77 |
|
| 2021 |
Berger CM, Landry CR. Yeast proteins do not practice social distancing as species hybridize. Current Genetics. PMID 33948708 DOI: 10.1007/s00294-021-01188-x |
0.354 |
|
| 2021 |
Ascencio D, Diss G, Gagnon-Arsenault I, Dubé AK, DeLuna A, Landry CR. Expression attenuation as a mechanism of robustness against gene duplication. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33526669 DOI: 10.1073/pnas.2014345118 |
0.778 |
|
| 2020 |
Dandage R, Berger CM, Gagnon-Arsenault I, Moon KM, Stacey RG, Foster LJ, Landry CR. Frequent assembly of chimeric complexes in the protein interaction network of an interspecies yeast hybrid. Molecular Biology and Evolution. PMID 33252673 DOI: 10.1093/molbev/msaa298 |
0.365 |
|
| 2020 |
Hénault M, Marsit S, Charron G, Landry CR. The effect of hybridization on transposable element accumulation in an undomesticated fungal species. Elife. 9. PMID 32955438 DOI: 10.7554/Elife.60474 |
0.354 |
|
| 2020 |
Hallin J, Cisneros AF, Hénault M, Fijarczyk A, Dandage R, Bautista C, Landry CR. Similarities in biological processes can be used to bridge ecology and molecular biology. Evolutionary Applications. 13: 1335-1350. PMID 32684962 DOI: 10.1111/Eva.12961 |
0.323 |
|
| 2020 |
Després PC, Dubé AK, Seki M, Yachie N, Landry CR. Perturbing proteomes at single residue resolution using base editing. Nature Communications. 11: 1871. PMID 32313011 DOI: 10.1038/S41467-020-15796-7 |
0.396 |
|
| 2020 |
Hessenauer P, Fijarczyk A, Martin H, Prunier J, Charron G, Chapuis J, Bernier L, Tanguay P, Hamelin RC, Landry CR. Hybridization and introgression drive genome evolution of Dutch elm disease pathogens. Nature Ecology & Evolution. PMID 32123324 DOI: 10.1038/S41559-020-1133-6 |
0.357 |
|
| 2020 |
Bleuven C, Nguyen GQ, Després PC, Filteau M, Landry CR. Competition experiments in a soil microcosm reveal the impact of genetic and biotic factors on natural yeast populations. The Isme Journal. PMID 32080356 DOI: 10.1038/S41396-020-0612-8 |
0.3 |
|
| 2019 |
Hallin J, Landry CR. Regulation plays a multifaceted role in the retention of gene duplicates. Plos Biology. 17: e3000519. PMID 31756186 DOI: 10.1371/Journal.Pbio.3000519 |
0.402 |
|
| 2019 |
Dandage R, Landry CR. Paralog dependency indirectly affects the robustness of human cells. Molecular Systems Biology. 15: e8871. PMID 31556487 DOI: 10.15252/Msb.20198871 |
0.462 |
|
| 2019 |
Charron G, Marsit S, Hénault M, Martin H, Landry CR. Spontaneous whole-genome duplication restores fertility in interspecific hybrids. Nature Communications. 10: 4126. PMID 31511504 DOI: 10.1038/S41467-019-12041-8 |
0.321 |
|
| 2019 |
Marchant A, Cisneros AF, Dubé AK, Gagnon-Arsenault I, Ascencio D, Jain H, Aubé S, Eberlein C, Evans-Yamamoto D, Yachie N, Landry CR. The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs. Elife. 8. PMID 31454312 DOI: 10.7554/Elife.46754 |
0.439 |
|
| 2019 |
Nielly-Thibault L, Landry CR. Differences Between the Raw Material and the Products of Gene Birth Can Result from Mutational Biases. Genetics. PMID 31227545 DOI: 10.1534/Genetics.119.302187 |
0.446 |
|
| 2019 |
Durand É, Gagnon-Arsenault I, Hallin J, Hatin I, Dubé AK, Nielly-Thibault L, Namy O, Landry CR. Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations. Genome Research. PMID 31152050 DOI: 10.1101/Gr.239822.118 |
0.394 |
|
| 2019 |
Eberlein C, Hénault M, Fijarczyk A, Charron G, Bouvier M, Kohn LM, Anderson JB, Landry CR. Hybridization is a recurrent evolutionary stimulus in wild yeast speciation. Nature Communications. 10: 923. PMID 30804385 DOI: 10.1038/S41467-019-08809-7 |
0.319 |
|
| 2018 |
Després PC, Dubé AK, Nielly-Thibault L, Yachie N, Landry CR. Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast. G3 (Bethesda, Md.). PMID 30097473 DOI: 10.1534/G3.118.200461 |
0.314 |
|
| 2018 |
Dionne U, Chartier FJM, López de Los Santos Y, Lavoie N, Bernard DN, Banerjee SL, Otis F, Jacquet K, Tremblay MG, Jain M, Bourassa S, Gish GD, Gagné JP, Poirier GG, Laprise P, ... ... Landry CR, et al. Direct Phosphorylation of SRC Homology 3 Domains by Tyrosine Kinase Receptors Disassembles Ligand-Induced Signaling Networks. Molecular Cell. PMID 29910111 DOI: 10.1016/J.Molcel.2018.05.013 |
0.349 |
|
| 2018 |
Wolters JF, Charron G, Gaspary A, Landry CR, Fiumera AC, Fiumera HL. Mitochondrial Recombination Reveals Mito-Mito Epistasis in Yeast. Genetics. PMID 29531011 DOI: 10.1534/Genetics.117.300660 |
0.334 |
|
| 2018 |
Chrétien AÈ, Gagnon-Arsenault I, Dubé AK, Barbeau X, Després PC, Lamothe C, Dion-Côté AM, Lagüe P, Landry CR. Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells. Molecular & Cellular Proteomics : McP. 17: 373-383. PMID 29391386 DOI: 10.1074/mcp.RA117.000385 |
0.342 |
|
| 2017 |
Chretien AE, Gagnon-Arsenault I, Dubé AK, Barbeau X, Després PC, Lamothe C, Dion-Coté AM, Lague P, Landry C. Extended linkers improve the detection of PPIs by DHFR PCA in living cells. Molecular & Cellular Proteomics : McP. PMID 29203496 DOI: 10.1074/Mcp.Tir117.000385 |
0.447 |
|
| 2017 |
Samandi S, Roy AV, Delcourt V, Lucier JF, Gagnon J, Beaudoin MC, Vanderperre B, Breton MA, Motard J, Jacques JF, Brunelle M, Gagnon-Arsenault I, Fournier I, Ouangraoua A, Hunting DJ, ... ... Landry CR, et al. Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins. Elife. 6. PMID 29083303 DOI: 10.7554/Elife.27860 |
0.452 |
|
| 2017 |
Landry CR, Diss G. Molecular Dependency Impacts on the Compensating Ability of Paralogs. Trends in Genetics : Tig. PMID 28870654 DOI: 10.1016/J.Tig.2017.07.012 |
0.704 |
|
| 2017 |
Marsit S, Leducq JB, Durand É, Marchant A, Filteau M, Landry CR. Evolutionary biology through the lens of budding yeast comparative genomics. Nature Reviews. Genetics. PMID 28714481 DOI: 10.1038/Nrg.2017.49 |
0.361 |
|
| 2017 |
Charron G, Landry CR. No evidence for extrinsic post-zygotic isolation in a wild Saccharomyces yeast system. Biology Letters. 13. PMID 28592521 DOI: 10.1098/Rsbl.2017.0197 |
0.318 |
|
| 2017 |
Eberlein C, Nielly-Thibault L, Maaroufi H, Dubé AK, Leducq JB, Charron G, Landry CR. The rapid evolution of an ohnolog contributes to the ecological specialization of incipient yeast species. Molecular Biology and Evolution. PMID 28482005 DOI: 10.1093/Molbev/Msx153 |
0.424 |
|
| 2017 |
Turner HN, Landry C, Galko MJ. Novel Assay for Cold Nociception in Drosophila Larvae. Journal of Visualized Experiments : Jove. PMID 28448025 DOI: 10.3791/55568 |
0.304 |
|
| 2017 |
Leducq JB, Henault M, Charron G, Nielly-Thibault L, Terrat Y, Fiumera HL, Jesse Shapiro B, Landry CR. Mitochondrial recombination and introgression during speciation by hybridization. Molecular Biology and Evolution. PMID 28444332 DOI: 10.1093/Molbev/Msx139 |
0.312 |
|
| 2017 |
Diss G, Gagnon-Arsenault I, Dion-Coté AM, Vignaud H, Ascencio DI, Berger CM, Landry CR. Gene duplication can impart fragility, not robustness, in the yeast protein interaction network. Science (New York, N.Y.). 355: 630-634. PMID 28183979 DOI: 10.1126/Science.Aai7685 |
0.782 |
|
| 2017 |
Samandi S, Roy AV, Delcourt V, Lucier J, Gagnon J, Beaudoin MC, Vanderperre B, Breton M, Motard J, Jacques J, Brunelle M, Gagnon-Arsenault I, Fournier I, Ouangraoua A, Hunting DJ, ... ... Landry CR, et al. Author response: Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins Elife. DOI: 10.7554/Elife.27860.083 |
0.379 |
|
| 2016 |
Hébert FO, Grambauer S, Barber I, Landry CR, Aubin-Horth N. Major host transitions are modulated through transcriptome-wide reprograming events in Schistocephalus solidus, a threespine stickleback parasite. Molecular Ecology. PMID 27997044 DOI: 10.1111/Mec.13970 |
0.336 |
|
| 2016 |
Xia W, Nielly-Thibault L, Charron G, Landry CR, Kasimer D, Anderson JB, Kohn LM. Population genomics reveals structure at the individual, host-tree scale and persistence of genotypic variants of the undomesticated yeast Saccharomyces paradoxus in a natural woodland. Molecular Ecology. PMID 27988980 DOI: 10.1111/Mec.13954 |
0.303 |
|
| 2016 |
Hénault M, Landry CR. When nuclear-encoded proteins and mitochondrial RNAs do not get along, species split apart. Embo Reports. PMID 27986790 DOI: 10.15252/Embr.201643645 |
0.392 |
|
| 2016 |
Caron D, Byrne DP, Thebault P, Soulet D, Landry CR, Eyers PA, Elowe S. Mitotic phosphotyrosine network analysis reveals that tyrosine phosphorylation regulates Polo-like kinase 1 (PLK1). Science Signaling. 9: rs14. PMID 27965426 DOI: 10.1126/Scisignal.Aah3525 |
0.32 |
|
| 2016 |
Filteau M, Charron G, Landry CR. Identification of the fitness determinants of budding yeast on a natural substrate. The Isme Journal. PMID 27935595 DOI: 10.1038/Ismej.2016.170 |
0.359 |
|
| 2016 |
Michnick SW, Landry CR, Levy ED, Diss G, Ear PH, Kowarzyk J, Malleshaiah MK, Messier V, Tchekanda E. Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein-Protein Interactions in Living Cells. Cold Spring Harbor Protocols. 2016: pdb.top083543. PMID 27803260 DOI: 10.1101/Pdb.Top083543 |
0.763 |
|
| 2016 |
Diss G, Landry CR. Combining the Dihydrofolate Reductase Protein-Fragment Complementation Assay with Gene Deletions to Establish Genotype-to-Phenotype Maps of Protein Complexes and Interaction Networks. Cold Spring Harbor Protocols. 2016: pdb.prot090035. PMID 27803253 DOI: 10.1101/Pdb.Prot090035 |
0.788 |
|
| 2016 |
Michnick SW, Levy ED, Landry CR, Kowarzyk J, Messier V. The Dihydrofolate Reductase Protein-Fragment Complementation Assay: A Survival-Selection Assay for Large-Scale Analysis of Protein-Protein Interactions. Cold Spring Harbor Protocols. 2016: pdb.prot090027. PMID 27803252 DOI: 10.1101/Pdb.Prot090027 |
0.414 |
|
| 2016 |
Bleuven C, Landry CR. Molecular and cellular bases of adaptation to a changing environment in microorganisms. Proceedings. Biological Sciences. 283. PMID 27798299 DOI: 10.1098/Rspb.2016.1458 |
0.405 |
|
| 2016 |
Leducq JB, Nielly-Thibault L, Charron G, Eberlein C, Verta JP, Samani P, Sylvester K, Hittinger CT, Bell G, Landry CR. Speciation driven by hybridization and chromosomal plasticity in a wild yeast. Nature Microbiology. 1: 15003. PMID 27571751 DOI: 10.1038/Nmicrobiol.2015.3 |
0.343 |
|
| 2016 |
Peris D, Langdon QK, Moriarty RV, Sylvester K, Bontrager M, Charron G, Leducq JB, Landry CR, Libkind D, Hittinger CT. Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus. Plos Genetics. 12: e1006155. PMID 27385107 DOI: 10.1371/Journal.Pgen.1006155 |
0.322 |
|
| 2016 |
Hébert FO, Grambauer S, Barber I, Landry CR, Aubin-Horth N. Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus, a threespine stickleback parasite. Gigascience. 5: 24. PMID 27259971 DOI: 10.1186/S13742-016-0128-3 |
0.321 |
|
| 2016 |
Verta JP, Landry CR, MacKay J. Dissection of expression-quantitative trait locus and allele specificity using a haploid/diploid plant system - insights into compensatory evolution of transcriptional regulation within populations. The New Phytologist. PMID 26891783 DOI: 10.1111/Nph.13888 |
0.379 |
|
| 2016 |
Barbosa R, Almeida P, Safar SV, Santos RO, Morais PB, Nielly-Thibault L, Leducq JB, Landry CR, Gonçalves P, Rosa CA, Sampaio JP. Evidence of natural hybridization in Brazilian wild lineages of Saccharomyces cerevisiae. Genome Biology and Evolution. PMID 26782936 DOI: 10.1093/Gbe/Evv263 |
0.32 |
|
| 2015 |
Eberlein C, Leducq JB, Landry CR. The genomics of wild yeast populations sheds light on the domestication of man's best (micro) friend. Molecular Ecology. 24: 5309-11. PMID 26509691 DOI: 10.1111/Mec.13380 |
0.375 |
|
| 2015 |
Filteau M, Vignaud H, Rochette S, Diss G, Chrétien AÈ, Berger CM, Landry CR. Multi-scale perturbations of protein interactomes reveal their mechanisms of regulation, robustness and insights into genotype-phenotype maps. Briefings in Functional Genomics. PMID 26476431 DOI: 10.1093/Bfgp/Elv043 |
0.777 |
|
| 2015 |
Filteau M, Hamel V, Pouliot MC, Gagnon-Arsenault I, Dubé AK, Landry CR. Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds. Molecular Systems Biology. 11: 832. PMID 26459777 DOI: 10.15252/Msb.20156444 |
0.354 |
|
| 2015 |
Nigg M, Laroche J, Landry CR, Bernier L. RNAseq Analysis Highlights Specific Transcriptome Signatures of Yeast and Mycelial Growth Phases in the Dutch Elm Disease Fungus Ophiostoma novo-ulmi. G3 (Bethesda, Md.). PMID 26384770 DOI: 10.1534/G3.115.021022 |
0.336 |
|
| 2015 |
Torres-Quiroz F, Filteau M, Landry CR. Feedback regulation between autophagy and PKA. Autophagy. 11: 1181-3. PMID 26046386 DOI: 10.1080/15548627.2015.1055440 |
0.44 |
|
| 2015 |
Hebert FO, Phelps L, Samonte I, Panchal M, Grambauer S, Barber I, Kalbe M, Landry CR, Aubin-Horth N. Identification of candidate mimicry proteins involved in parasite-driven phenotypic changes. Parasites & Vectors. 8: 225. PMID 25888917 DOI: 10.1186/S13071-015-0834-1 |
0.413 |
|
| 2015 |
Rochette S, Diss G, Filteau M, Leducq JB, Dubé AK, Landry CR. Genome-wide protein-protein interaction screening by protein-fragment complementation assay (PCA) in living cells. Journal of Visualized Experiments : Jove. PMID 25867901 DOI: 10.3791/52255 |
0.769 |
|
| 2015 |
Filteau M, Diss G, Torres-Quiroz F, Dubé AK, Schraffl A, Bachmann VA, Gagnon-Arsenault I, Chrétien AÈ, Steunou AL, Dionne U, Côté J, Bisson N, Stefan E, Landry CR. Systematic identification of signal integration by protein kinase A. Proceedings of the National Academy of Sciences of the United States of America. 112: 4501-6. PMID 25831502 DOI: 10.1073/Pnas.1409938112 |
0.768 |
|
| 2015 |
Landry CR, Zhong X, Nielly-Thibault L, Roucou X. Found in translation: functions and evolution of a recently discovered alternative proteome. Current Opinion in Structural Biology. 32: 74-80. PMID 25795211 DOI: 10.1016/J.Sbi.2015.02.017 |
0.444 |
|
| 2015 |
Boutchueng-Djidjou M, Collard-Simard G, Fortier S, Hébert SS, Kelly I, Landry CR, Faure RL. The last enzyme of the de novo purine synthesis pathway 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (ATIC) plays a central role in insulin signaling and the Golgi/endosomes protein network. Molecular & Cellular Proteomics : McP. 14: 1079-92. PMID 25687571 DOI: 10.1074/Mcp.M114.047159 |
0.316 |
|
| 2015 |
Stockwell SR, Landry CR, Rifkin SA. The yeast galactose network as a quantitative model for cellular memory. Molecular Biosystems. 11: 28-37. PMID 25328105 DOI: 10.1039/C4Mb00448E |
0.653 |
|
| 2014 |
Nguyen Ba AN, Strome B, Hua JJ, Desmond J, Gagnon-Arsenault I, Weiss EL, Landry CR, Moses AM. Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences. Plos Computational Biology. 10: e1003977. PMID 25474245 DOI: 10.1371/Journal.Pcbi.1003977 |
0.478 |
|
| 2014 |
Landry CR, Freschi L, Zarin T, Moses AM. Turnover of protein phosphorylation evolving under stabilizing selection. Frontiers in Genetics. 5: 245. PMID 25101120 DOI: 10.3389/Fgene.2014.00245 |
0.714 |
|
| 2014 |
Charron G, Leducq JB, Landry CR. Chromosomal variation segregates within incipient species and correlates with reproductive isolation. Molecular Ecology. 23: 4362-72. PMID 25039979 DOI: 10.1111/Mec.12864 |
0.364 |
|
| 2014 |
Goldman A, Roy J, Bodenmiller B, Wanka S, Landry CR, Aebersold R, Cyert MS. The calcineurin signaling network evolves via conserved kinase-phosphatase modules that transcend substrate identity. Molecular Cell. 55: 422-35. PMID 24930733 DOI: 10.1016/J.Molcel.2014.05.012 |
0.365 |
|
| 2014 |
Freschi L, Osseni M, Landry CR. Functional divergence and evolutionary turnover in mammalian phosphoproteomes. Plos Genetics. 10: e1004062. PMID 24465218 DOI: 10.1371/Journal.Pgen.1004062 |
0.711 |
|
| 2014 |
Diss G, Ascencio D, DeLuna A, Landry CR. Molecular mechanisms of paralogous compensation and the robustness of cellular networks. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 322: 488-99. PMID 24376223 DOI: 10.1002/Jez.B.22555 |
0.768 |
|
| 2014 |
Landry CR, Aubin-Horth N. Recent advances in ecological genomics: from phenotypic plasticity to convergent and adaptive evolution and speciation. Advances in Experimental Medicine and Biology. 781: 1-5. PMID 24277292 DOI: 10.1007/978-94-007-7347-9_1 |
0.369 |
|
| 2014 |
Rochette S, Gagnon-Arsenault I, Diss G, Landry CR. Modulation of the yeast protein interactome in response to DNA damage. Journal of Proteomics. 100: 25-36. PMID 24262151 DOI: 10.1016/J.Jprot.2013.11.007 |
0.763 |
|
| 2014 |
Charron G, Leducq JB, Bertin C, Dubé AK, Landry CR. Exploring the northern limit of the distribution of Saccharomyces cerevisiae and Saccharomyces paradoxus in North America. Fems Yeast Research. 14: 281-8. PMID 24119009 DOI: 10.1111/1567-1364.12100 |
0.32 |
|
| 2013 |
Landry CR, Levy ED, Abd Rabbo D, Tarassov K, Michnick SW. Extracting insight from noisy cellular networks. Cell. 155: 983-9. PMID 24267884 DOI: 10.1016/J.Cell.2013.11.003 |
0.338 |
|
| 2013 |
Diss G, Dubé AK, Boutin J, Gagnon-Arsenault I, Landry CR. A systematic approach for the genetic dissection of protein complexes in living cells. Cell Reports. 3: 2155-67. PMID 23746448 DOI: 10.1016/J.Celrep.2013.05.004 |
0.768 |
|
| 2013 |
Diss G, Filteau M, Freschi L, Leducq JB, Rochette S, Torres-Quiroz F, Landry CR. Integrative avenues for exploring the dynamics and evolution of protein interaction networks. Current Opinion in Biotechnology. 24: 775-83. PMID 23571097 DOI: 10.1016/J.Copbio.2013.02.023 |
0.792 |
|
| 2013 |
Verta JP, Landry CR, Mackay JJ. Are long-lived trees poised for evolutionary change? Single locus effects in the evolution of gene expression networks in spruce. Molecular Ecology. 22: 2369-79. PMID 23294325 DOI: 10.1111/Mec.12189 |
0.466 |
|
| 2013 |
Freschi L, Torres-Quiroz F, Dubé AK, Landry CR. qPCA: a scalable assay to measure the perturbation of protein-protein interactions in living cells. Molecular Biosystems. 9: 36-43. PMID 23099892 DOI: 10.1039/C2Mb25265A |
0.741 |
|
| 2013 |
Gagnon-Arsenault I, Marois Blanchet FC, Rochette S, Diss G, Dubé AK, Landry CR. Transcriptional divergence plays a role in the rewiring of protein interaction networks after gene duplication. Journal of Proteomics. 81: 112-25. PMID 23063722 DOI: 10.1016/J.Jprot.2012.09.038 |
0.792 |
|
| 2013 |
Leducq J, Charron G, Diss G, Gagnon-Arsenault I, Dubé AK, Landry CR. Correction: Evidence for the Robustness of Protein Complexes to Inter-Species Hybridization Plos Genetics. 9. DOI: 10.1371/Annotation/76B70Ba2-F53D-4D7B-A348-9C941173Aece |
0.747 |
|
| 2012 |
Leducq JB, Charron G, Diss G, Gagnon-Arsenault I, Dubé AK, Landry CR. Evidence for the robustness of protein complexes to inter-species hybridization. Plos Genetics. 8: e1003161. PMID 23300466 DOI: 10.1371/Journal.Pgen.1003161 |
0.769 |
|
| 2012 |
Goyette G, Boulais J, Carruthers NJ, Landry CR, Jutras I, Duclos S, Dermine JF, Michnick SW, LaBoissière S, Lajoie G, Barreiro L, Thibault P, Desjardins M. Proteomic characterization of phagosomal membrane microdomains during phagolysosome biogenesis and evolution. Molecular & Cellular Proteomics : McP. 11: 1365-77. PMID 22915823 DOI: 10.1074/Mcp.M112.021048 |
0.358 |
|
| 2012 |
Pavey SA, Bernatchez L, Aubin-Horth N, Landry CR. What is needed for next-generation ecological and evolutionary genomics? Trends in Ecology & Evolution. 27: 673-8. PMID 22902072 DOI: 10.1016/J.Tree.2012.07.014 |
0.391 |
|
| 2012 |
Levy ED, Michnick SW, Landry CR. Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 2594-606. PMID 22889910 DOI: 10.1098/Rstb.2012.0078 |
0.436 |
|
| 2012 |
Landry CR, Rifkin SA. The genotype-phenotype maps of systems biology and quantitative genetics: distinct and complementary. Advances in Experimental Medicine and Biology. 751: 371-98. PMID 22821467 DOI: 10.1007/978-1-4614-3567-9_17 |
0.662 |
|
| 2012 |
Diss G, Freschi L, Landry CR. Where do phosphosites come from and where do they go after gene duplication? International Journal of Evolutionary Biology. 2012: 843167. PMID 22779031 DOI: 10.1155/2012/843167 |
0.79 |
|
| 2012 |
Lee S, Thebault P, Freschi L, Beaufils S, Blundell TL, Landry CR, Bolanos-Garcia VM, Elowe S. Characterization of spindle checkpoint kinase Mps1 reveals domain with functional and structural similarities to tetratricopeptide repeat motifs of Bub1 and BubR1 checkpoint kinases. The Journal of Biological Chemistry. 287: 5988-6001. PMID 22187426 DOI: 10.1074/Jbc.M111.307355 |
0.673 |
|
| 2011 |
Michnick SW, Ear PH, Landry C, Malleshaiah MK, Messier V. Protein-fragment complementation assays for large-scale analysis, functional dissection and dynamic studies of protein-protein interactions in living cells. Methods in Molecular Biology (Clifton, N.J.). 756: 395-425. PMID 21870242 DOI: 10.1007/978-1-61779-160-4_25 |
0.452 |
|
| 2011 |
Freschi L, Courcelles M, Thibault P, Michnick SW, Landry CR. Phosphorylation network rewiring by gene duplication. Molecular Systems Biology. 7: 504. PMID 21734643 DOI: 10.1038/Msb.2011.43 |
0.75 |
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| 2011 |
Verta J, Caron S, Giguère I, Boyle B, Landry CR, MacKay J. Haploid transcriptome analysis reveals allelelic gene expression variants, co-expressed gene groups, and linkages between expression and copy number variation Bmc Proceedings. 5. DOI: 10.1186/1753-6561-5-S7-O47 |
0.417 |
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| 2010 |
Landry CR, Rifkin SA. Chromatin regulators shape the genotype-phenotype map. Molecular Systems Biology. 6: 434. PMID 21119628 DOI: 10.1038/Msb.2010.97 |
0.685 |
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| 2010 |
Landry CR, Aubin-Horth N. Gene network architecture as a canvas for the interpretation of ecological genomics investigations. Molecular Ecology. 19: 5084-5. PMID 21091660 DOI: 10.1111/J.1365-294X.2010.04830.X |
0.381 |
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| 2010 |
Boulais J, Trost M, Landry CR, Dieckmann R, Levy ED, Soldati T, Michnick SW, Thibault P, Desjardins M. Molecular characterization of the evolution of phagosomes. Molecular Systems Biology. 6: 423. PMID 20959821 DOI: 10.1038/Msb.2010.80 |
0.382 |
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| 2010 |
Michnick SW, Ear PH, Landry C, Malleshaiah MK, Messier V. A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells. Methods in Enzymology. 470: 335-68. PMID 20946817 DOI: 10.1016/S0076-6879(10)70014-8 |
0.433 |
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| 2010 |
Moses AM, Landry CR. Moving from transcriptional to phospho-evolution: generalizing regulatory evolution? Trends in Genetics : Tig. 26: 462-7. PMID 20817339 DOI: 10.1016/J.Tig.2010.08.002 |
0.467 |
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| 2010 |
Levy ED, Landry CR, Michnick SW. Cell signaling. Signaling through cooperation. Science (New York, N.Y.). 328: 983-4. PMID 20489011 DOI: 10.1126/Science.1190993 |
0.332 |
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| 2010 |
Fontanillas P, Landry CR, Wittkopp PJ, Russ C, Gruber JD, Nusbaum C, Hartl DL. Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing. Molecular Ecology. 19: 212-27. PMID 20331781 DOI: 10.1111/J.1365-294X.2010.04472.X |
0.564 |
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| 2009 |
Landry CR, Levy ED, Michnick SW. Weak functional constraints on phosphoproteomes. Trends in Genetics : Tig. 25: 193-7. PMID 19349092 DOI: 10.1016/J.Tig.2009.03.003 |
0.388 |
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| 2009 |
Levy ED, Landry CR, Michnick SW. How perfect can protein interactomes be? Science Signaling. 2: pe11. PMID 19261595 DOI: 10.1126/Scisignal.260Pe11 |
0.45 |
|
| 2009 |
Landry CR. Systems biology spins off a new model for the study of canalization. Trends in Ecology & Evolution. 24: 63-6. PMID 19100652 DOI: 10.1016/J.Tree.2008.10.004 |
0.436 |
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| 2008 |
Cheung V, Chua G, Batada NN, Landry CR, Michnick SW, Hughes TR, Winston F. Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. Plos Biology. 6: e277. PMID 18998772 DOI: 10.1371/Journal.Pbio.0060277 |
0.352 |
|
| 2008 |
Lynch M, Sung W, Morris K, Coffey N, Landry CR, Dopman EB, Dickinson WJ, Okamoto K, Kulkarni S, Hartl DL, Thomas WK. A genome-wide view of the spectrum of spontaneous mutations in yeast. Proceedings of the National Academy of Sciences of the United States of America. 105: 9272-7. PMID 18583475 DOI: 10.1073/Pnas.0803466105 |
0.517 |
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| 2008 |
Tarassov K, Messier V, Landry CR, Radinovic S, Serna Molina MM, Shames I, Malitskaya Y, Vogel J, Bussey H, Michnick SW. An in vivo map of the yeast protein interactome. Science (New York, N.Y.). 320: 1465-70. PMID 18467557 DOI: 10.1126/Science.1153878 |
0.486 |
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| 2008 |
Brown KM, Landry CR, Hartl DL, Cavalieri D. Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae. Molecular Ecology. 17: 2985-97. PMID 18422925 DOI: 10.1111/J.1365-294X.2008.03765.X |
0.695 |
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| 2007 |
Stefan E, Aquin S, Berger N, Landry CR, Nyfeler B, Bouvier M, Michnick SW. Quantification of dynamic protein complexes using Renilla luciferase fragment complementation applied to protein kinase A activities in vivo. Proceedings of the National Academy of Sciences of the United States of America. 104: 16916-21. PMID 17942691 DOI: 10.1073/Pnas.0704257104 |
0.401 |
|
| 2007 |
Landry CR, Aubin-Horth N. Ecological annotation of genes and genomes through ecological genomics. Molecular Ecology. 16: 4419-21. PMID 17883391 DOI: 10.1111/J.1365-294X.2007.03504.X |
0.31 |
|
| 2007 |
Landry CR, Hartl DL, Ranz JM. Genome clashes in hybrids: insights from gene expression. Heredity. 99: 483-93. PMID 17687247 DOI: 10.1038/Sj.Hdy.6801045 |
0.755 |
|
| 2007 |
Salathia N, Lee HN, Sangster TA, Morneau K, Landry CR, Schellenberg K, Behere AS, Gunderson KL, Cavalieri D, Jander G, Queitsch C. Indel arrays: an affordable alternative for genotyping. The Plant Journal : For Cell and Molecular Biology. 51: 727-37. PMID 17645438 DOI: 10.1111/J.1365-313X.2007.03194.X |
0.347 |
|
| 2007 |
Landry CR, Lemos B, Rifkin SA, Dickinson WJ, Hartl DL. Genetic properties influencing the evolvability of gene expression. Science (New York, N.Y.). 317: 118-21. PMID 17525304 DOI: 10.1126/Science.1140247 |
0.731 |
|
| 2007 |
Landry CR, Castillo-Davis CI, Ogura A, Liu JS, Hartl DL. Systems-level analysis and evolution of the phototransduction network in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 104: 3283-8. PMID 17360639 DOI: 10.1073/Pnas.0611402104 |
0.799 |
|
| 2006 |
Landry CR, Townsend JP, Hartl DL, Cavalieri D. Ecological and evolutionary genomics of Saccharomyces cerevisiae. Molecular Ecology. 15: 575-91. PMID 16499686 DOI: 10.1111/J.1365-294X.2006.02778.X |
0.671 |
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| 2006 |
Landry CR, Oh J, Hartl DL, Cavalieri D. Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes. Gene. 366: 343-51. PMID 16427747 DOI: 10.1016/J.Gene.2005.10.042 |
0.594 |
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| 2005 |
Giuntini E, Mengoni A, De Filippo C, Cavalieri D, Aubin-Horth N, Landry CR, Becker A, Bazzicalupo M. Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains. Bmc Genomics. 6: 158. PMID 16283928 DOI: 10.1186/1471-2164-6-158 |
0.345 |
|
| 2005 |
Landry CR, Wittkopp PJ, Taubes CH, Ranz JM, Clark AG, Hartl DL. Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Genetics. 171: 1813-22. PMID 16143608 DOI: 10.1534/Genetics.105.047449 |
0.723 |
|
| 2005 |
Aubin-Horth N, Landry CR, Letcher BH, Hofmann HA. Alternative life histories shape brain gene expression profiles in males of the same population. Proceedings. Biological Sciences / the Royal Society. 272: 1655-62. PMID 16087419 DOI: 10.1098/Rspb.2005.3125 |
0.323 |
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| 2003 |
Bernatchez L, Landry C. MHC studies in nonmodel vertebrates: What have we learned about natural selection in 15 years? Journal of Evolutionary Biology. 16: 363-377. PMID 14635837 DOI: 10.1046/J.1420-9101.2003.00531.X |
0.367 |
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| 2003 |
Landry C, Geyer LB, Arakaki Y, Uehara T, Palumbi SR. Recent speciation in the Indo-West Pacific: rapid evolution of gamete recognition and sperm morphology in cryptic species of sea urchin. Proceedings. Biological Sciences / the Royal Society. 270: 1839-47. PMID 12964987 DOI: 10.1098/Rspb.2003.2395 |
0.38 |
|
| 2001 |
Landry C, Bernatchez L. Comparative analysis of population structure across environments and geographical scales at major histocompatibility complex and microsatellite loci in Atlantic salmon (Salmo salar) Molecular Ecology. 10: 2525-2539. PMID 11742552 DOI: 10.1046/J.1365-294X.2001.01383.X |
0.339 |
|
| 2001 |
Landry C, Garant D, Duchesne P, Bernatchez L. 'Good genes as heterozygosity': The major histocompatibility complex and mate choice in Atlantic salmon (Salmo salar) Proceedings of the Royal Society B: Biological Sciences. 268: 1279-1285. PMID 11410155 DOI: 10.1098/Rspb.2001.1659 |
0.339 |
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