| Year |
Citation |
Score |
| 2020 |
Yu X, Buck MJ. Pioneer factors and their in vitro identification methods. Molecular Genetics and Genomics : Mgg. PMID 32296927 DOI: 10.1007/S00438-020-01675-9 |
0.345 |
|
| 2019 |
Tsompana M, Gluck C, Sethi I, Joshi I, Bard J, Nowak NJ, Sinha S, Buck MJ. Reactivation of super-enhancers by KLF4 in human Head and Neck Squamous Cell Carcinoma. Oncogene. PMID 31477832 DOI: 10.1038/S41388-019-0990-4 |
0.406 |
|
| 2019 |
Gluck C, Glathar A, Tsompana M, Nowak N, Garrett-Sinha LA, Buck MJ, Sinha S. Molecular dissection of the oncogenic role of ETS1 in the mesenchymal subtypes of head and neck squamous cell carcinoma. Plos Genetics. 15: e1008250. PMID 31306413 DOI: 10.1371/Journal.Pgen.1008250 |
0.335 |
|
| 2018 |
Yu X, Buck MJ. Defining TP53 pioneering capabilities with competitive nucleosome binding assays. Genome Research. PMID 30409772 DOI: 10.1101/Gr.234104.117 |
0.352 |
|
| 2018 |
LaMonte MJ, Genco RJ, Zheng W, McSkimming DI, Andrews CA, Hovey KM, Li L, Sun Y, Buck MJ, Millen AE, Falkner KL, Wactawski-Wende J. Substantial Differences in the Subgingival Microbiome Measured by 16S Metagenomics According to Periodontitis Status in Older Women. Dentistry Journal. 6. PMID 30347640 DOI: 10.3390/Dj6040058 |
0.319 |
|
| 2017 |
Simpson RM, Bruno AE, Chen R, Lott K, Tylec BL, Bard JE, Sun Y, Buck MJ, Read LK. Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization. Nucleic Acids Research. PMID 28535252 DOI: 10.1093/Nar/Gkx458 |
0.324 |
|
| 2017 |
Sethi I, Gluck C, Zhou H, Buck MJ, Sinha S. Evolutionary re-wiring of p63 and the epigenomic regulatory landscape in keratinocytes and its potential implications on species-specific gene expression and phenotypes. Nucleic Acids Research. PMID 28505376 DOI: 10.1093/Nar/Gkx416 |
0.387 |
|
| 2017 |
Zhu J, Wang J, Chen X, Tsompana M, Gaile D, Buck M, Ren X. A Time-Series Analysis of Altered Histone H3 Acetylation and Gene Expression during the Course of MMAIII-Induced Malignant Transformation of Urinary Bladder Cells. Carcinogenesis. PMID 28182198 DOI: 10.1093/Carcin/Bgx011 |
0.378 |
|
| 2016 |
Tomov ML, Olmsted ZT, Dogan H, Gongorurler E, Tsompana M, Otu HH, Buck M, Chang EA, Cibelli J, Paluh JL. Distinct and Shared Determinants of Cardiomyocyte Contractility in Multi-Lineage Competent Ethnically Diverse Human iPSCs. Scientific Reports. 6: 37637. PMID 27917881 DOI: 10.1038/Srep37637 |
0.308 |
|
| 2016 |
Simpson RM, Bruno AE, Bard JE, Buck MJ, Read LK. High-throughput sequencing of partially edited trypanosome mRNAs reveals barriers to editing progression and evidence for alternative editing. Rna (New York, N.Y.). PMID 26908922 DOI: 10.1261/Rna.055160.115 |
0.323 |
|
| 2016 |
Sethi I, Tsompana M, Gluck C, Buck MJ, Sinha S. Abstract B13: Genomic mistargeting of p63 drives the cancer phenotype in head and neck squamous cell carcinoma Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-B13 |
0.371 |
|
| 2015 |
Sethi I, Romano RA, Gluck C, Smalley K, Vojtesek B, Buck MJ, Sinha S. A global analysis of the complex landscape of isoforms and regulatory networks of p63 in human cells and tissues. Bmc Genomics. 16: 584. PMID 26251276 DOI: 10.1186/S12864-015-1793-9 |
0.327 |
|
| 2015 |
Terranova C, Narla ST, Lee YW, Bard J, Parikh A, Stachowiak EK, Tzanakakis ES, Buck MJ, Birkaya B, Stachowiak MK. Global Developmental Gene Programing Involves a Nuclear Form of Fibroblast Growth Factor Receptor-1 (FGFR1). Plos One. 10: e0123380. PMID 25923916 DOI: 10.1371/Journal.Pone.0123380 |
0.382 |
|
| 2015 |
Tsompana M, Valiyaparambil S, Bard J, Marzullo B, Nowak N, Buck MJ. An automated method for efficient, accurate and reproducible construction of RNA-seq libraries. Bmc Research Notes. 8: 124. PMID 25879881 DOI: 10.1186/S13104-015-1089-9 |
0.366 |
|
| 2015 |
Jiang K, Zhu L, Buck MJ, Chen Y, Carrier B, Liu T, Jarvis JN. Disease-Associated Single-Nucleotide Polymorphisms From Noncoding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells. Arthritis & Rheumatology (Hoboken, N.J.). 67: 1966-77. PMID 25833190 DOI: 10.1002/Art.39135 |
0.325 |
|
| 2015 |
Paul E, Tirosh I, Lai W, Buck MJ, Palumbo MJ, Morse RH. Chromatin mediation of a transcriptional memory effect in yeast. G3 (Bethesda, Md.). 5: 829-38. PMID 25748434 DOI: 10.1534/G3.115.017418 |
0.371 |
|
| 2014 |
Tsompana M, Buck MJ. Chromatin accessibility: a window into the genome. Epigenetics & Chromatin. 7: 33. PMID 25473421 DOI: 10.1186/1756-8935-7-33 |
0.436 |
|
| 2014 |
Sethi I, Sinha S, Buck MJ. Role of chromatin and transcriptional co-regulators in mediating p63-genome interactions in keratinocytes. Bmc Genomics. 15: 1042. PMID 25433490 DOI: 10.1186/1471-2164-15-1042 |
0.359 |
|
| 2014 |
Buck MJ, Raaijmakers LM, Ramakrishnan S, Wang D, Valiyaparambil S, Liu S, Nowak NJ, Pili R. Alterations in chromatin accessibility and DNA methylation in clear cell renal cell carcinoma. Oncogene. 33: 4961-5. PMID 24186201 DOI: 10.1038/Onc.2013.455 |
0.364 |
|
| 2014 |
Jiang K, Liu T, Buck M, Chen Y, Carrier B, Jarvis J. OP0191 Disease-Associated SNPS from Non-Coding Regions in Juvenile Idiopathic Arthritis Are Located within or Adjacent to Functional Genomic Elements of Human Neutrophils Annals of the Rheumatic Diseases. 73: 134.3-135. DOI: 10.1136/Annrheumdis-2014-Eular.4577 |
0.36 |
|
| 2014 |
Jarvis JN, Jiang K, Liu T, Buck M, Carrier B, Chen Y. A174: JIA-Associated SNPs From Non-Coding Regions Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils Arthritis & Rheumatology. 66: S227-S227. DOI: 10.1002/Art.38600 |
0.373 |
|
| 2013 |
Ge Y, Gong Z, Olson JR, Xu P, Buck MJ, Ren X. Inhibition of monomethylarsonous acid (MMA(III))-induced cell malignant transformation through restoring dysregulated histone acetylation. Toxicology. 312: 30-5. PMID 23891734 DOI: 10.1016/J.Tox.2013.07.011 |
0.305 |
|
| 2013 |
Garcia H, Miecznikowski JC, Safina A, Commane M, Ruusulehto A, Kilpinen S, Leach RW, Attwood K, Li Y, Degan S, Omilian AR, Guryanova O, Papantonopoulou O, Wang J, Buck M, et al. Facilitates chromatin transcription complex is an "accelerator" of tumor transformation and potential marker and target of aggressive cancers. Cell Reports. 4: 159-73. PMID 23831030 DOI: 10.1016/J.Celrep.2013.06.013 |
0.368 |
|
| 2013 |
Lai WK, Buck MJ. An integrative approach to understanding the combinatorial histone code at functional elements. Bioinformatics (Oxford, England). 29: 2231-7. PMID 23821650 DOI: 10.1093/Bioinformatics/Btt382 |
0.403 |
|
| 2013 |
Yang CC, Buck MJ, Chen MH, Chen YF, Lan HC, Chen JJ, Cheng C, Liu CC. Discovering chromatin motifs using FAIRE sequencing and the human diploid genome. Bmc Genomics. 14: 310. PMID 23656909 DOI: 10.1186/1471-2164-14-310 |
0.424 |
|
| 2013 |
Lai WK, Buck MJ. Identifying genomic features by BLASTing through chromatin Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P43 |
0.357 |
|
| 2012 |
Rizzo JM, Buck MJ. Key principles and clinical applications of "next-generation" DNA sequencing. Cancer Prevention Research (Philadelphia, Pa.). 5: 887-900. PMID 22617168 DOI: 10.1158/1940-6207.Capr-11-0432 |
0.306 |
|
| 2012 |
Givens RM, Lai WK, Rizzo JM, Bard JE, Mieczkowski PA, Leatherwood J, Huberman JA, Buck MJ. Chromatin architectures at fission yeast transcriptional promoters and replication origins. Nucleic Acids Research. 40: 7176-89. PMID 22573177 DOI: 10.1093/Nar/Gks351 |
0.392 |
|
| 2012 |
Rizzo JM, Bard JE, Buck MJ. Standardized collection of MNase-seq experiments enables unbiased dataset comparisons. Bmc Molecular Biology. 13: 15. PMID 22559821 DOI: 10.1186/1471-2199-13-15 |
0.352 |
|
| 2011 |
Givens RM, Mesner LD, Hamlin JL, Buck MJ, Huberman JA. Integrity of chromatin and replicating DNA in nuclei released from fission yeast by semi-automated grinding in liquid nitrogen. Bmc Research Notes. 4: 499. PMID 22088094 DOI: 10.1186/1756-0500-4-499 |
0.309 |
|
| 2011 |
Rizzo JM, Mieczkowski PA, Buck MJ. Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes. Nucleic Acids Research. 39: 8803-19. PMID 21785133 DOI: 10.1093/Nar/Gkr557 |
0.421 |
|
| 2011 |
Hanlon SE, Rizzo JM, Tatomer DC, Lieb JD, Buck MJ. The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae. Plos One. 6: e19060. PMID 21552514 DOI: 10.1371/Journal.Pone.0019060 |
0.41 |
|
| 2011 |
Rizzo JM, Buck MJ. All Things Ch IP: Ch IP‐Chip, Ch IP‐Seq, Ch IP‐PCR Reviews in Cell Biology and Molecular Medicine. DOI: 10.1002/3527600906.Mcb.201100007 |
0.308 |
|
| 2010 |
Lai WK, Buck MJ. ArchAlign: coordinate-free chromatin alignment reveals novel architectures. Genome Biology. 11: R126. PMID 21182771 DOI: 10.1186/Gb-2010-11-12-R126 |
0.383 |
|
| 2010 |
Escamilla-Hernandez R, Chakrabarti R, Romano RA, Smalley K, Zhu Q, Lai W, Halfon MS, Buck MJ, Sinha S. Genome-wide search identifies Ccnd2 as a direct transcriptional target of Elf5 in mouse mammary gland. Bmc Molecular Biology. 11: 68. PMID 20831799 DOI: 10.1186/1471-2199-11-68 |
0.407 |
|
| 2009 |
Sun W, Buck MJ, Patel M, Davis IJ. Improved ChIP-chip analysis by a mixture model approach. Bmc Bioinformatics. 10: 173. PMID 19500407 DOI: 10.1186/1471-2105-10-173 |
0.329 |
|
| 2007 |
Mieczkowski PA, Dominska M, Buck MJ, Lieb JD, Petes TD. Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 104: 3955-60. PMID 17360459 DOI: 10.1073/Pnas.0700412104 |
0.377 |
|
| 2007 |
Xiao T, Shibata Y, Rao B, Laribee RN, O'Rourke R, Buck MJ, Greenblatt JF, Krogan NJ, Lieb JD, Strahl BD. The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes. Molecular and Cellular Biology. 27: 721-31. PMID 17088384 DOI: 10.1128/Mcb.01628-06 |
0.354 |
|
| 2006 |
Buck MJ, Lieb JD. A chromatin-mediated mechanism for specification of conditional transcription factor targets. Nature Genetics. 38: 1446-51. PMID 17099712 DOI: 10.1038/Ng1917 |
0.402 |
|
| 2006 |
Mieczkowski PA, Dominska M, Buck MJ, Gerton JL, Lieb JD, Petes TD. Global analysis of the relationship between the binding of the Bas1p transcription factor and meiosis-specific double-strand DNA breaks in Saccharomyces cerevisiae. Molecular and Cellular Biology. 26: 1014-27. PMID 16428454 DOI: 10.1128/Mcb.26.3.1014-1027.2006 |
0.375 |
|
| 2005 |
Buck MJ, Nobel AB, Lieb JD. ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data. Genome Biology. 6: R97. PMID 16277752 DOI: 10.1186/Gb-2005-6-11-R97 |
0.345 |
|
| 2005 |
Buck MJ, Atchley WR. Networks of coevolving sites in structural and functional domains of serpin proteins. Molecular Biology and Evolution. 22: 1627-34. PMID 15858204 DOI: 10.1093/Molbev/Msi157 |
0.549 |
|
| 2004 |
Buck MJ, Lieb JD. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics. 83: 349-60. PMID 14986705 DOI: 10.1016/J.Ygeno.2003.11.004 |
0.349 |
|
| 2003 |
Buck MJ, Atchley WR. Phylogenetic analysis of plant basic helix-loop-helix proteins. Journal of Molecular Evolution. 56: 742-50. PMID 12911037 DOI: 10.1007/S00239-002-2449-3 |
0.558 |
|
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