☰

Xionglei He, Ph.D. - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
molecular and genomic evolution
Tree Info Similar researchers PubMed Report error

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Wang Y, Jiang B, Wu Y, He X, Liu L. Rapid intraspecies evolution of fitness effects of yeast genes. Genome Biology and Evolution. PMID 35482054 DOI: 10.1093/gbe/evac061  0.325
2020 Liu L, Liu M, Zhang D, Deng S, Chen P, Yang J, Xie Y, He X. Decoupling gene functions from knockout effects by evolutionary analyses. National Science Review. 7: 1169-1180. PMID 34692141 DOI: 10.1093/nsr/nwaa079  0.351
2020 Liu L, Wang Y, Zhang D, Chen Z, Chen X, Su Z, He X. The origin of additive genetic variance driven by positive selection. Molecular Biology and Evolution. PMID 32243529 DOI: 10.1093/Molbev/Msaa085  0.329
2020 Liu L, Liu M, Zhang D, Deng S, Chen P, Yang J, Xie Y, He X. Decoupling gene functions from knockout effects by evolutionary analyses National Science Review. 7: 1169-1180. DOI: 10.1093/Nsr/Nwaa079  0.47
2018 Zhang H, Wang Y, Li J, Chen H, He X, Zhang H, Liang H, Lu J. Biosynthetic energy cost for amino acids decreases in cancer evolution. Nature Communications. 9: 4124. PMID 30297703 DOI: 10.1038/S41467-018-06461-1  0.318
2018 Duan C, Huan Q, Chen X, Wu S, Carey LB, He X, Qian W. Reduced intrinsic DNA curvature leads to increased mutation rate. Genome Biology. 19: 132. PMID 30217230 DOI: 10.1186/S13059-018-1525-Y  0.486
2017 Chen H, Wu CI, He X. The genotype-phenotype relationships in the light of natural selection. Molecular Biology and Evolution. PMID 29136190 DOI: 10.1093/Molbev/Msx288  0.43
2016 Chen P, Wang D, Chen H, Zhou Z, He X. The non-essentiality of essential genes in yeast provides therapeutic insights into a human disease. Genome Research. PMID 27440870 DOI: 10.1101/Gr.205955.116  0.456
2016 He X. The biology complicated by genetic analysis. Molecular Biology and Evolution. PMID 27297473 DOI: 10.1093/Molbev/Msw111  0.441
2016 He X, Liu L. EVOLUTION. Toward a prospective molecular evolution. Science (New York, N.Y.). 352: 769-70. PMID 27174972 DOI: 10.1126/Science.Aaf7543  0.421
2015 Chen H, Lin F, Xing K, He X. Corrigendum: The reverse evolution from multicellularity to unicellularity during carcinogenesis. Nature Communications. 6: 8812. PMID 26511015 DOI: 10.1038/Ncomms9812  0.308
2015 Chen H, He X. The convergent cancer evolution toward a single cellular destination. Molecular Biology and Evolution. PMID 26464125 DOI: 10.1093/Molbev/Msv212  0.424
2015 Ji C, Miao Z, He X. A simple strategy for reducing false negatives in calling variants from single-cell sequencing data. Plos One. 10: e0123789. PMID 25876174 DOI: 10.1371/Journal.Pone.0123789  0.304
2015 Chen H, Xing K, He X. The dJ/dS Ratio Test Reveals Hundreds of Novel Putative Cancer Drivers. Molecular Biology and Evolution. 32: 2181-5. PMID 25873590 DOI: 10.1093/Molbev/Msv083  0.351
2015 Chen H, Lin F, Xing K, He X. The reverse evolution from multicellularity to unicellularity during carcinogenesis. Nature Communications. 6: 6367. PMID 25751731 DOI: 10.1038/Ncomms7367  0.4
2015 Xing K, He X. Reassessing the "duon" hypothesis of protein evolution. Molecular Biology and Evolution. 32: 1056-62. PMID 25582593 DOI: 10.1093/Molbev/Msu409  0.418
2012 Lin F, Xing K, Zhang J, He X. Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proceedings of the National Academy of Sciences of the United States of America. 109: 11752-7. PMID 22753487 DOI: 10.1073/Pnas.1201816109  0.559
2011 Qian W, He X, Chan E, Xu H, Zhang J. Measuring the evolutionary rate of protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 108: 8725-30. PMID 21555556 DOI: 10.1073/Pnas.1104695108  0.597
2011 Xu M, He X. Genetic incompatibility dampens hybrid fertility more than hybrid viability: yeast as a case study. Plos One. 6: e18341. PMID 21494679 DOI: 10.1371/Journal.Pone.0018341  0.365
2011 Wu H, Wang J, Deng R, Xing K, Xiong Y, Huang J, He X, Wang X. Benefits of random-priming: exhaustive survey of a cDNA library from lung tissue of a SARS patient. Journal of Medical Virology. 83: 574-86. PMID 21328370 DOI: 10.1002/Jmv.22012  0.335
2011 He X, Chen X, Xiong Y, Chen Z, Wang X, Shi S, Zhang J. He et al. reply Nature Genetics. 43: 1171-1172. DOI: 10.1038/Ng.1010  0.369
2010 Xiong Y, Chen X, Chen Z, Wang X, Shi S, Wang X, Zhang J, He X. RNA sequencing shows no dosage compensation of the active X-chromosome. Nature Genetics. 42: 1043-7. PMID 21102464 DOI: 10.1038/Ng.711  0.49
2010 He X, Qian W, Wang Z, Li Y, Zhang J. Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks. Nature Genetics. 42: 272-6. PMID 20101242 DOI: 10.1038/Ng.524  0.588
2009 Chen X, Shi S, He X. Evidence for gene length as a determinant of gene coexpression in protein complexes. Genetics. 183: 751-4, 1SI-5SI. PMID 19620395 DOI: 10.1534/Genetics.109.105361  0.474
2009 He X, Zhang J. On the growth of scientific knowledge: yeast biology as a case study. Plos Computational Biology. 5: e1000320. PMID 19300476 DOI: 10.1371/Journal.Pcbi.1000320  0.442
2006 He X, Zhang J. Why do hubs tend to be essential in protein networks? Plos Genetics. 2: e88. PMID 16751849 DOI: 10.1371/Journal.Pgen.0020088  0.505
2006 He X, Zhang J. Toward a molecular understanding of pleiotropy. Genetics. 173: 1885-91. PMID 16702416 DOI: 10.1534/Genetics.106.060269  0.621
2006 He X, Zhang J. Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon? Genetics. 172: 1363-7. PMID 16322517 DOI: 10.1534/Genetics.105.049890  0.604
2006 He X, Zhang J. Higher duplicability of less important genes in yeast genomes. Molecular Biology and Evolution. 23: 144-51. PMID 16151181 DOI: 10.1093/Molbev/Msj015  0.587
2005 He X, Zhang J. Gene complexity and gene duplicability. Current Biology : Cb. 15: 1016-21. PMID 15936271 DOI: 10.1016/J.Cub.2005.04.035  0.605
2005 Zhang J, He X. Significant impact of protein dispensability on the instantaneous rate of protein evolution. Molecular Biology and Evolution. 22: 1147-55. PMID 15689524 DOI: 10.1093/Molbev/Msi101  0.593
2005 He X, Zhang J. Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics. 169: 1157-64. PMID 15654095 DOI: 10.1534/Genetics.104.037051  0.609
2003 Wu W, Wang J, Deng R, Wang X, He X, Long Q. An efficient method for precise gene substitution in the AcMNPV genome by homologous recombination in E. coli. Journal of Virological Methods. 113: 95-101. PMID 14553895 DOI: 10.1016/S0166-0934(03)00225-8  0.344
Show low-probability matches.