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Stephanie M. Cologna, Ph.D. - Publications

Affiliations: 
2010 Texas A & M University, College Station, TX, United States 
Area:
Biological Mass Spectrometry
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Horvath JD, Casas M, Kutchukian C, Sánchez SC, Pergande MR, Cologna SM, Simó S, Dixon RE, Dickson EJ. α-Synuclein-dependent increases in PIP5K1γ drive inositol signaling to promote neurotoxicity. Cell Reports. 42: 113244. PMID 37838947 DOI: 10.1016/j.celrep.2023.113244  0.633
2023 Khamidova N, Pergande MR, Pathmasiri KC, Khan R, Mohr JT, Cologna SM. DBDA Matrix Increases Ion Abundance of Fatty Acids and Sulfatides in MALDI-TOF and Mass Spectrometry Imaging Studies. Journal of the American Society For Mass Spectrometry. PMID 37424084 DOI: 10.1021/jasms.3c00061  0.67
2023 Cologna SM, Pathmasiri KC, Pergande MR, Rosenhouse-Dantsker A. Alterations in Cholesterol and Phosphoinositides Levels in the Intracellular Cholesterol Trafficking Disorder NPC. Advances in Experimental Medicine and Biology. 1422: 143-165. PMID 36988880 DOI: 10.1007/978-3-031-21547-6_5  0.673
2023 Cougnoux A, Pergande MR, Serna-Perez F, Cologna SM. Investigation of 2-Hydroxypropyl-β-Cyclodextrin Treatment in a Neuronal-Like Cell Model of Niemann-Pick Type C Using Quantitative Proteomics. Journal of the American Society For Mass Spectrometry. 34: 668-675. PMID 36920149 DOI: 10.1021/jasms.2c00342  0.666
2023 Khamidova N, Pergande MR, Pathmasiri KC, Khan R, Mohr JT, Cologna SM. DBDA matrix increases ion abundance of fatty acids and sulfatides in MALDI-TOF and mass spectrometry imaging studies. Biorxiv : the Preprint Server For Biology. PMID 36711800 DOI: 10.1101/2023.01.13.524013  0.668
2023 Li W, Pergande MR, Crutchfield CA, Searle BC, Backlund PS, Picache JA, Burkert K, Yanjanin-Farhat NM, Blank PS, Toth CL, Wassif CA, Porter FD, Cologna SM. A Differential Proteomics Study of Cerebrospinal Fluid from Individuals with Niemann-Pick Disease, Type C1. Proteomics. e2200378. PMID 36638187 DOI: 10.1002/pmic.202200378  0.68
2022 Salvi A, Hardy LR, Heath KN, Watry S, Pergande MR, Cologna SM, Burdette JE. PAX8 modulates the tumor microenvironment of high grade serous ovarian cancer through changes in the secretome. Neoplasia (New York, N.Y.). 36: 100866. PMID 36586182 DOI: 10.1016/j.neo.2022.100866  0.665
2022 Bergsten TM, Levy SE, Zink KE, Lusk HJ, Pergande MR, Cologna SM, Burdette JE, Sanchez LM. Fallopian tube secreted protein affects ovarian metabolites in high grade serous ovarian cancer. Frontiers in Cell and Developmental Biology. 10: 1042734. PMID 36420136 DOI: 10.3389/fcell.2022.1042734  0.671
2022 Singaram I, Sharma A, Pant S, Lihan M, Park MJ, Pergande M, Buwaneka P, Hu Y, Mahmud N, Kim YM, Cologna S, Gevorgyan V, Khan I, Tajkhorshid E, Cho W. Targeting lipid-protein interaction to treat Syk-mediated acute myeloid leukemia. Nature Chemical Biology. PMID 36229686 DOI: 10.1038/s41589-022-01150-z  0.651
2022 Park HS, Chugh RM, Pergande MR, Cetin E, Siblini H, Esfandyari S, Cologna SM, Al-Hendy A. Non-Cytokine Protein Profile of the Mesenchymal Stem Cell Secretome That Regulates the Androgen Production Pathway. International Journal of Molecular Sciences. 23. PMID 35563028 DOI: 10.3390/ijms23094633  0.672
2022 Wang ZY, Pergande MR, Ragsdale CW, Cologna SM. Steroid hormones of the octopus self-destruct system. Current Biology : Cb. PMID 35561680 DOI: 10.1016/j.cub.2022.04.043  0.65
2022 Pergande MR, Kang C, George D, Sutter PA, Crocker SJ, Cologna SM, Givogri MI. Lipidomic analysis identifies age-disease-related changes and potential new biomarkers in brain-derived extracellular vesicles from metachromatic leukodystrophy mice. Lipids in Health and Disease. 21: 32. PMID 35351138 DOI: 10.1186/s12944-022-01644-8  0.676
2022 Salvi A, Young AN, Huntsman AC, Pergande MR, Korkmaz MA, Rathnayake RA, Mize BK, Kinghorn AD, Zhang X, Ratia K, Schirle M, Thomas JR, Brittain SM, Shelton C, Aldrich LN, ... Cologna SM, et al. PHY34 inhibits autophagy through V-ATPase V0A2 subunit inhibition and CAS/CSE1L nuclear cargo trafficking in high grade serous ovarian cancer. Cell Death & Disease. 13: 45. PMID 35013112 DOI: 10.1038/s41419-021-04495-w  0.665
2021 Pergande MR, Amoroso VG, Nguyen TTA, Li W, Vice E, Park TJ, Cologna SM. PPARα and PPARγ Signaling Is Enhanced in the Brain of the Naked Mole-Rat, a Mammal that Shows Intrinsic Neuroprotection from Oxygen Deprivation. Journal of Proteome Research. PMID 34351155 DOI: 10.1021/acs.jproteome.1c00131  0.67
2020 Frankel D, Davies M, Bhushan B, Kulaberoglu Y, Urriola-Munoz P, Bertrand-Michel J, Pergande MR, Smith AA, Preet S, Park TJ, Vendruscolo M, Rankin KS, Cologna SM, Kumita JR, Cenac N, et al. Cholesterol-rich naked mole-rat brain lipid membranes are susceptible to amyloid beta-induced damage . Aging. 12. PMID 33147569 DOI: 10.18632/aging.202138  0.651
2020 Olson MT, Yergey AL, Mukherjee K, Pergande MR, Bane SL, Cologna SM, Sackett DL. Taurine is covalently incorporated into alpha tubulin. Journal of Proteome Research. PMID 32400163 DOI: 10.1021/Acs.Jproteome.0C00147  0.674
2020 Pathmasiri KC, Pergande MR, Tobias F, Rebiai R, Rosenhouse-Dantsker A, Bongarzone ER, Cologna SM. Mass spectrometry imaging and LC-MS reveal decreased cerebellar phosphoinositides in Niemann-Pick type C1-null mice. Journal of Lipid Research. PMID 32371566 DOI: 10.1194/Jlr.Ra119000606  0.709
2020 Tobin MK, Stephen TKL, Lopez KL, Pergande MR, Bartholomew AM, Cologna SM, Lazarov O. Activated Mesenchymal Stem Cells Induce Recovery Following Stroke Via Regulation of Inflammation and Oligodendrogenesis. Journal of the American Heart Association. 9: e013583. PMID 32204666 DOI: 10.1161/Jaha.119.013583  0.661
2020 Teclemariam ET, Pergande MR, Cologna SM. Considerations for mass spectrometry based multi-omic analysis of clinical samples. Expert Review of Proteomics. PMID 31996049 DOI: 10.1080/14789450.2020.1724540  0.688
2019 Mazinani SA, Noaman N, Pergande MR, Cologna SM, Coorssen J, Yan H. Exposure to microwave irradiation at constant culture temperature slows the growth of DE3 cells, leading to modified proteomic profiles. Rsc Advances. 9: 11810-11817. PMID 35517035 DOI: 10.1039/c9ra00617f  0.668
2019 Pergande MR, Serna-Perez F, Mohsin SB, Hanek J, Cologna SM. Lipidomic Analysis Reveals Altered Fatty Acid Metabolism in the Liver of the Symptomatic Niemann-Pick, Type C1 Mouse Model. Proteomics. e1800285. PMID 31394590 DOI: 10.1002/Pmic.201800285  0.69
2019 Hardy LR, Pergande MR, Esparza K, Heath KN, Önyüksel H, Cologna SM, Burdette JE. Proteomic analysis reveals a role for PAX8 in peritoneal colonization of high grade serous ovarian cancer that can be targeted with micelle encapsulated thiostrepton. Oncogene. PMID 31296958 DOI: 10.1038/S41388-019-0842-2  0.683
2019 Tobias F, Pathmasiri KC, Cologna SM. Mass spectrometry imaging reveals ganglioside and ceramide localization patterns during cerebellar degeneration in the Npc1 mouse model. Analytical and Bioanalytical Chemistry. PMID 31254056 DOI: 10.1007/S00216-019-01989-7  0.376
2019 Pergande MR, Zarate E, Haney-Ball C, Davidson CD, Scesa G, Givogri MI, Bongarzone ER, Cologna SM. Standard-flow LC and thermal focusing ESI elucidates altered liver proteins in late stage Niemann-Pick, type C1 disease. Bioanalysis. 11: 1067-1083. PMID 31251104 DOI: 10.4155/Bio-2018-0232  0.701
2019 Nguyen TTA, Li W, Park TJ, Gong LW, Cologna SM. Investigating Phosphorylation Patterns of the Ion Channel TRPM7 Using Multiple Extraction and Enrichment Techniques Reveals New Phosphosites. Journal of the American Society For Mass Spectrometry. PMID 31140077 DOI: 10.1007/S13361-019-02223-5  0.337
2019 Cologna SM, Rosenhouse-Dantsker A. Insights into the Molecular Mechanisms of Cholesterol Binding to the NPC1 and NPC2 Proteins. Advances in Experimental Medicine and Biology. 1135: 139-160. PMID 31098815 DOI: 10.1007/978-3-030-14265-0_8  0.309
2019 Kurgan N, Noaman N, Pergande MR, Cologna SM, Coorssen JR, Klentrou P. Changes to the Human Serum Proteome in Response to High Intensity Interval Exercise: A Sequential Top-Down Proteomic Analysis. Frontiers in Physiology. 10: 362. PMID 31001142 DOI: 10.3389/Fphys.2019.00362  0.665
2019 Pergande MR, Nguyen TTA, Haney-Ball C, Davidson CD, Cologna SM. Quantitative, label-free proteomics in the symptomatic Niemann-Pick, type C1 mouse model using standard flow liquid chromatography and thermal focusing electrospray ionization. Proteomics. e1800432. PMID 30888112 DOI: 10.1002/Pmic.201800432  0.722
2019 Pergande MR, Cougnoux A, Rathnayake RAC, Porter FD, Cologna SM. Differential Proteomics Reveals miR-155 as a Novel Indicator of Liver and Spleen Pathology in the Symptomatic Niemann-Pick Disease, Type C1 Mouse Model. Molecules (Basel, Switzerland). 24. PMID 30870990 DOI: 10.3390/Molecules24050994  0.689
2019 Cologna SM. Mass Spectrometry Imaging of Cholesterol. Advances in Experimental Medicine and Biology. 1115: 155-166. PMID 30649759 DOI: 10.1007/978-3-030-04278-3_7  0.321
2019 Mazinani SA, Noaman N, Pergande MR, Cologna S, Coorssen J, Yan H. Exposure to microwave irradiation at constant culture temperature slows the growth of Escherichia coli DE3 cells, leading to modified proteomic profiles Rsc Advances. 9: 11810-11817. DOI: 10.1039/C9Ra00617F  0.651
2018 Tobias F, Olson MT, Cologna SM. Mass Spectrometry Imaging of Lipids: Generation of Untargeted Consensus Spectra Reveals Spatial Distributions in Niemann-Pick Disease, Type C1. Journal of Lipid Research. PMID 30266834 DOI: 10.1194/Jlr.D086090  0.356
2018 Hardy L, Pergande M, Hernandez A, Cologna S, Burdette J. Abstract 4039: PAX8 increases migration and metastasis of high grade serous ovarian cancer through upregulation of Rho GTPases Cancer Research. 78: 4039-4039. DOI: 10.1158/1538-7445.Am2018-4039  0.677
2017 Yergey AL, Blank PS, Cologna SM, Backlund PS, Porter FD, Darling AJ. Characterization of hydroxypropyl-beta-cyclodextrins used in the treatment of Niemann-Pick Disease type C1. Plos One. 12: e0175478. PMID 28414792 DOI: 10.1371/Journal.Pone.0175478  0.313
2017 Pergande MR, Cologna SM. Isoelectric Point Separations of Peptides and Proteins. Proteomes. 5. PMID 28248255 DOI: 10.3390/Proteomes5010004  0.667
2016 Epstein JA, Blank PS, Searle BC, Catlin AD, Cologna SM, Olson MT, Backlund PS, Coorssen JR, Yergey AL. ProteinProcessor: A probabilistic analysis using mass accuracy and the MS spectrum. Proteomics. PMID 27546229 DOI: 10.1002/Pmic.201600137  0.328
2016 Cologna SM, Shieh C, Toth CL, Cougnoux A, Burkert KR, Bianconi SE, Wassif CA, Porter FD. Altered cerebrospinal fluid proteins in Smith-Lemli-Opitz syndrome patients. American Journal of Medical Genetics. Part A. PMID 27148958 DOI: 10.1002/Ajmg.A.37720  0.333
2016 Nicoli ER, Al Eisa N, Cluzeau CV, Wassif CA, Gray J, Burkert KR, Smith DA, Morris L, Cologna SM, Peer CJ, Sissung TM, Uscatu CD, Figg WD, Pavan WJ, Vite CH, et al. Defective Cytochrome P450-Catalysed Drug Metabolism in Niemann-Pick Type C Disease. Plos One. 11: e0152007. PMID 27019000 DOI: 10.1371/Journal.Pone.0152007  0.302
2015 Cologna SM, Crutchfield CA, Searle BC, Blank PS, Toth CL, Ely AM, Picache JA, Backlund PS, Wassif CA, Porter FD, Yergey AL. An Efficient Approach to Evaluate Reporter Ion Behavior from MALDI-MS/MS Data for Quantification Studies Using Isobaric Tags. Journal of Proteome Research. 14: 4169-78. PMID 26288259 DOI: 10.1021/Acs.Jproteome.5B00254  0.346
2015 Rauschecker ML, Cologna SM, Xekouki P, Nilubol N, Shamburek RD, Merino M, Backlund PS, Yergey AL, Kebebew E, Balow JE, Stratakis CA, Abraham SB. Clinical Case Report: LECT2-Associated Adrenal Amyloidosis Aace Clinical Case Reports. 1: e59-e67. DOI: 10.4158/Ep13443.Cr  0.304
2014 Cologna SM, Cluzeau CV, Yanjanin NM, Blank PS, Dail MK, Siebel S, Toth CL, Wassif CA, Lieberman AP, Porter FD. Human and mouse neuroinflammation markers in Niemann-Pick disease, type C1. Journal of Inherited Metabolic Disease. 37: 83-92. PMID 23653225 DOI: 10.1007/S10545-013-9610-6  0.325
2012 Cologna SM, Jiang XS, Backlund PS, Cluzeau CV, Dail MK, Yanjanin NM, Siebel S, Toth CL, Jun HS, Wassif CA, Yergey AL, Porter FD. Quantitative proteomic analysis of Niemann-Pick disease, type C1 cerebellum identifies protein biomarkers and provides pathological insight. Plos One. 7: e47845. PMID 23144710 DOI: 10.1371/Journal.Pone.0047845  0.402
2011 Cologna SM, Williams BJ, Russell WK, Pai PJ, Vigh G, Russell DH. Studies of histidine as a suitable isoelectric buffer for tryptic digestion and isoelectric trapping fractionation followed by capillary electrophoresis-mass spectrometry for proteomic analysis. Analytical Chemistry. 83: 8108-14. PMID 21894976 DOI: 10.1021/Ac201237R  0.639
2011 Newton BW, Cologna SM, Moya C, Russell DH, Russell WK, Jayaraman A. Proteomic analysis of 3T3-L1 adipocyte mitochondria during differentiation and enlargement. Journal of Proteome Research. 10: 4692-702. PMID 21815628 DOI: 10.1021/Pr200491H  0.516
2011 Pai PJ, Cologna SM, Russell WK, Vigh G, Russell DH. Efficient electrophoretic method to remove neutral additives from protein solutions followed by mass spectrometry analysis. Analytical Chemistry. 83: 2814-8. PMID 21395231 DOI: 10.1021/Ac1029743  0.474
2010 Cologna SM, Russell WK, Lim PJ, Vigh G, Russell DH. Combining isoelectric point-based fractionation, liquid chromatography and mass spectrometry to improve peptide detection and protein identification. Journal of the American Society For Mass Spectrometry. 21: 1612-9. PMID 20537905 DOI: 10.1016/J.Jasms.2010.04.010  0.464
2009 Becker C, Fernandez-Lima FA, Gillig KJ, Russell WK, Cologna SM, Russell DH. A novel approach to collision-induced dissociation (CID) for ion mobility-mass spectrometry experiments. Journal of the American Society For Mass Spectrometry. 20: 907-14. PMID 19135385 DOI: 10.1016/J.Jasms.2008.11.026  0.636
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