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Gene-Wei Li, Ph.D. - Publications

Affiliations: 
2010 Harvard University, Cambridge, MA, United States 
Area:
Physics and chemistry of condensed matter
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Johnson GE, Parker DJ, Lalanne JB, Parker ML, Li GW. BaM-seq and TBaM-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation from bacterial samples. Nar Genomics and Bioinformatics. 5: lqad017. PMID 36879903 DOI: 10.1093/nargab/lqad017  0.758
2022 Herzel L, Stanley JA, Yao CC, Li GW. Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome. Nucleic Acids Research. 50: 5029-5046. PMID 35524564 DOI: 10.1093/nar/gkac295  0.35
2021 Lalanne JB, Li GW. First-principles model of optimal translation factors stoichiometry. Elife. 10. PMID 34590582 DOI: 10.7554/eLife.69222  0.764
2021 Taggart JC, Lalanne JB, Li GW. Quantitative Control for Stoichiometric Protein Synthesis. Annual Review of Microbiology. PMID 34343023 DOI: 10.1146/annurev-micro-041921-012646  0.783
2021 Mori M, Zhang Z, Banaei-Esfahani A, Lalanne JB, Okano H, Collins BC, Schmidt A, Schubert OT, Lee DS, Li GW, Aebersold R, Hwa T, Ludwig C. From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions. Molecular Systems Biology. 17: e9536. PMID 34032011 DOI: 10.15252/msb.20209536  0.766
2021 McCormick DM, Lalanne JB, Lan TCT, Rouskin S, Li GW. Sigma factor dependent translational activation in . Rna (New York, N.Y.). PMID 33927010 DOI: 10.1261/rna.078747.121  0.777
2021 Lalanne JB, Parker DJ, Li GW. Spurious regulatory connections dictate the expression-fitness landscape of translation factors. Molecular Systems Biology. 17: e10302. PMID 33900014 DOI: 10.15252/msb.202110302  0.754
2020 Johnson GE, Lalanne JB, Peters ML, Li GW. Functionally uncoupled transcription-translation in Bacillus subtilis. Nature. PMID 32848247 DOI: 10.1038/S41586-020-2638-5  0.788
2020 Parker DJ, Lalanne JB, Kimura S, Johnson GE, Waldor MK, Li GW. Growth-Optimized Aminoacyl-tRNA Synthetase Levels Prevent Maximal tRNA Charging. Cell Systems. PMID 32726597 DOI: 10.1016/J.Cels.2020.07.005  0.749
2020 Taggart JC, Zauber H, Selbach M, Li GW, McShane E. Keeping the Proportions of Protein Complex Components in Check. Cell Systems. 10: 125-132. PMID 32105631 DOI: 10.1016/J.Cels.2020.01.004  0.435
2020 Harden TT, Herlambang KS, Chamberlain M, Lalanne JB, Wells CD, Li GW, Landick R, Hochschild A, Kondev J, Gelles J. Alternative transcription cycle for bacterial RNA polymerase. Nature Communications. 11: 448. PMID 31974358 DOI: 10.1038/S41467-019-14208-9  0.772
2019 Burton AT, DeLoughery A, Li GW, Kearns DB. Transcriptional Regulation and Mechanism of SigN (ZpdN), a pBS32-Encoded Sigma Factor in Bacillus subtilis. Mbio. 10. PMID 31530675 DOI: 10.1128/Mbio.01899-19  0.425
2018 Taggart JC, Li GW. Production of Protein-Complex Components Is Stoichiometric and Lacks General Feedback Regulation in Eukaryotes. Cell Systems. PMID 30553725 DOI: 10.1016/J.Cels.2018.11.003  0.418
2018 Johnson GE, Li GW. Genome-Wide Quantitation of Protein Synthesis Rates in Bacteria. Methods in Enzymology. 612: 225-249. PMID 30502943 DOI: 10.1016/Bs.Mie.2018.08.031  0.469
2018 Babina AM, Parker DJ, Li GW, Meyer MM. Fitness advantages conferred by the L20-interacting RNA cis-regulator of ribosomal protein synthesis in Bacillus subtilis. Rna (New York, N.Y.). PMID 29925569 DOI: 10.1261/Rna.065011.117  0.377
2018 DeLoughery A, Lalanne JB, Losick R, Li GW. Maturation of polycistronic mRNAs by the endoribonuclease RNase Y and its associated Y-complex in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29794222 DOI: 10.1073/Pnas.1803283115  0.768
2018 Zhang Y, Burkhardt DH, Rouskin S, Li GW, Weissman JS, Gross CA. A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation. Molecular Cell. PMID 29628307 DOI: 10.1016/J.Molcel.2018.02.035  0.581
2018 Lalanne JB, Taggart JC, Guo MS, Herzel L, Schieler A, Li GW. Evolutionary Convergence of Pathway-Specific Enzyme Expression Stoichiometry. Cell. PMID 29606352 DOI: 10.1016/J.Cell.2018.03.007  0.794
2017 DeFrancesco AS, Masloboeva N, Syed AK, DeLoughery A, Bradshaw N, Li GW, Gilmore MS, Walker S, Losick R. Genome-wide screen for genes involved in eDNA release during biofilm formation by Staphylococcus aureus. Proceedings of the National Academy of Sciences of the United States of America. PMID 28674000 DOI: 10.1073/Pnas.1704544114  0.375
2017 Burkhardt DH, Rouskin S, Zhang Y, Li GW, Weissman JS, Gross CA. Operon mRNAs are organized into ORF-centric structures that predict translation efficiency. Elife. 6. PMID 28139975 DOI: 10.7554/Elife.22037  0.551
2017 Burkhardt DH, Rouskin S, Zhang Y, Li G, Weissman JS, Gross CA. Author response: Operon mRNAs are organized into ORF-centric structures that predict translation efficiency Elife. DOI: 10.7554/Elife.22037.024  0.507
2016 Schrader JM, Li GW, Childers WS, Perez AM, Weissman JS, Shapiro L, McAdams HH. Dynamic translation regulation in Caulobacter cell cycle control. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791168 DOI: 10.1073/Pnas.1614795113  0.541
2015 Niu Y, Zhang R, Luo Z, Li L, Cai L, Li G, Xie J. Contributions of long-term tillage systems on crop production and soil properties in the semiarid Loess Plateau of China. Journal of the Science of Food and Agriculture. PMID 26300314 DOI: 10.1002/jsfa.7382  0.312
2015 Li GW. How do bacteria tune translation efficiency? Current Opinion in Microbiology. 24: 66-71. PMID 25636133 DOI: 10.1016/J.Mib.2015.01.001  0.455
2014 Schrader JM, Zhou B, Li GW, Lasker K, Childers WS, Williams B, Long T, Crosson S, McAdams HH, Weissman JS, Shapiro L. The coding and noncoding architecture of the Caulobacter crescentus genome. Plos Genetics. 10: e1004463. PMID 25078267 DOI: 10.1371/Journal.Pgen.1004463  0.529
2014 Li GW, Burkhardt D, Gross C, Weissman JS. Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell. 157: 624-35. PMID 24766808 DOI: 10.1016/J.Cell.2014.02.033  0.601
2014 Lee M, Schrader J, Li G, Weissman J, McAdams H, Shapiro L, Moerner W. Quantifying the Spatial Organization of Bacterial Ribosomes using Three-Dimensional Super-Resolution Microscopy Biophysical Journal. 106: 492a. DOI: 10.1016/J.Bpj.2013.11.2753  0.573
2014 Schrader JM, Li G, Zhou B, Weissman JS, Shapiro L. Ribosome Profiling of the Caulobacter Cell-Cycle Biophysical Journal. 106: 375a-376a. DOI: 10.1016/J.Bpj.2013.11.2125  0.608
2013 Chen B, Gilbert LA, Cimini BA, Schnitzbauer J, Zhang W, Li GW, Park J, Blackburn EH, Weissman JS, Qi LS, Huang B. Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system. Cell. 155: 1479-91. PMID 24360272 DOI: 10.1016/J.Cell.2013.12.001  0.519
2013 O'Connor PB, Li GW, Weissman JS, Atkins JF, Baranov PV. rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinformatics (Oxford, England). 29: 1488-91. PMID 23603333 DOI: 10.1093/Bioinformatics/Btt184  0.509
2012 Brandman O, Stewart-Ornstein J, Wong D, Larson A, Williams CC, Li GW, Zhou S, King D, Shen PS, Weibezahn J, Dunn JG, Rouskin S, Inada T, Frost A, Weissman JS. A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress. Cell. 151: 1042-54. PMID 23178123 DOI: 10.1016/J.Cell.2012.10.044  0.735
2012 Li GW, Oh E, Weissman JS. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature. 484: 538-41. PMID 22456704 DOI: 10.1038/Nature10965  0.601
2011 Wang W, Li GW, Chen C, Xie XS, Zhuang X. Chromosome organization by a nucleoid-associated protein in live bacteria. Science (New York, N.Y.). 333: 1445-9. PMID 21903814 DOI: 10.1126/Science.1204697  0.462
2011 Li GW, Xie XS. Central dogma at the single-molecule level in living cells. Nature. 475: 308-15. PMID 21776076 DOI: 10.1038/Nature10315  0.575
2010 Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, Hearn J, Emili A, Xie XS. Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science (New York, N.Y.). 329: 533-8. PMID 20671182 DOI: 10.1126/Science.1188308  0.765
2010 Taniguchi Y, Choi PJ, Li G, Chen H, Hearn J, Babu M, Emili A, Xie XS. 2SD1025 Quantifying the Escherichia coli proteome and transcriptome in a single cell with single-molecule sensitivity(2SD Bridging Single Molecule Biophysics and System Biology:New Experimental and Theoretical Challenges,The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 50: S12. DOI: 10.2142/Biophys.50.S12_5  0.71
2009 Li GW, Elf J. Single molecule approaches to transcription factor kinetics in living cells. Febs Letters. 583: 3979-83. PMID 19925790 DOI: 10.1016/J.Febslet.2009.11.035  0.361
2009 Li G, Berg OG, Elf J. Effects of macromolecular crowding and DNA looping on gene regulation kinetics Nature Physics. 5: 294-297. DOI: 10.1038/Nphys1222  0.33
2008 Xie XS, Choi PJ, Li GW, Lee NK, Lia G. Single-molecule approach to molecular biology in living bacterial cells. Annual Review of Biophysics. 37: 417-44. PMID 18573089 DOI: 10.1146/Annurev.Biophys.37.092607.174640  0.709
2007 Elf J, Li GW, Xie XS. Probing transcription factor dynamics at the single-molecule level in a living cell. Science (New York, N.Y.). 316: 1191-4. PMID 17525339 DOI: 10.1126/Science.1141967  0.519
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