| Year |
Citation |
Score |
| 2023 |
Rojas CA, Entrolezo Z, Jarett JK, Jospin G, Kingsbury DD, Martin A, Eisen JA, Ganz HH. Microbiome Responses to Fecal Microbiota Transplantation in Cats with Chronic Digestive Issues. Veterinary Sciences. 10. PMID 37756083 DOI: 10.3390/vetsci10090561 |
0.703 |
|
| 2023 |
Rojas CA, Gardy J, Eisen JA, Ganz HH. Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat () using Hi-C proximity ligation and shotgun metagenomics. Microbiology Resource Announcements. 12: e0060123. PMID 37695121 DOI: 10.1128/MRA.00601-23 |
0.785 |
|
| 2023 |
De León ME, Wilson HS, Jospin G, Eisen JA. Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives. Microbial Genomics. 9. PMID 37052581 DOI: 10.1099/mgen.0.000971 |
0.396 |
|
| 2023 |
Tran MT, Seuylemezian A, Wright A, Coil D, Eisen J, Guan L. Draft Genome Sequences of Spacecraft-Associated Microbes Isolated from Six NASA Missions. Microbiology Resource Announcements. 12: e0101122. PMID 36840549 DOI: 10.1128/mra.01011-22 |
0.371 |
|
| 2022 |
Rojas CA, Holekamp KE, Viladomat Jasso M, Souza V, Eisen JA, Theis KR. Taxonomic, Genomic, and Functional Variation in the Gut Microbiomes of Wild Spotted Hyenas Across 2 Decades of Study. Msystems. e0096522. PMID 36533929 DOI: 10.1128/msystems.00965-22 |
0.423 |
|
| 2022 |
Ganz HH, Jospin G, Rojas CA, Martin AL, Dahlhausen K, Kingsbury DD, Osborne CX, Entrolezo Z, Redner S, Ramirez B, Eisen JA, Leahy M, Keaton C, Wong J, Gardy J, et al. The Kitty Microbiome Project: Defining the Healthy Fecal "Core Microbiome" in Pet Domestic Cats. Veterinary Sciences. 9. PMID 36423084 DOI: 10.3390/vetsci9110635 |
0.691 |
|
| 2022 |
Wilbanks EG, Doré H, Ashby MH, Heiner C, Roberts RJ, Eisen JA. Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity. The Isme Journal. PMID 35459792 DOI: 10.1038/s41396-022-01242-7 |
0.813 |
|
| 2021 |
De León ME, Wilson HS, Jospin G, Eisen JA. Draft Genome Sequences and Genomic Analysis for Pigment Production in Bacteria Isolated from Blue Discolored Soymilk and Tofu. Journal of Genomics. 9: 55-67. PMID 34646396 DOI: 10.7150/jgen.65500 |
0.326 |
|
| 2021 |
Leray M, Wilkins LGE, Apprill A, Bik HM, Clever F, Connolly SR, De León ME, Duffy JE, Ezzat L, Gignoux-Wolfsohn S, Herre EA, Kaye JZ, Kline DI, Kueneman JG, McCormick MK, ... ... Eisen JA, et al. Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution. Plos Biology. 19: e3001322. PMID 34411089 DOI: 10.1371/journal.pbio.3001322 |
0.667 |
|
| 2021 |
Ettinger CL, Bryan J, Tokajian S, Jospin G, Coil D, Eisen JA. Reconstruction of Metagenome-Assembled Genomes from Aquaria. Microbiology Resource Announcements. 10: e0055721. PMID 34351234 DOI: 10.1128/MRA.00557-21 |
0.344 |
|
| 2021 |
Ettinger CL, Vann LE, Eisen JA. Global diversity and biogeography of the mycobiome. Applied and Environmental Microbiology. PMID 33837008 DOI: 10.1128/AEM.02795-20 |
0.814 |
|
| 2020 |
Furrow RE, Kim HG, Abdelrazek SMR, Dahlhausen K, Yao AI, Eisen JA, Goldman MS, Albeck JG, Facciotti MT. Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience. Frontiers in Microbiology. 11: 581903. PMID 33250873 DOI: 10.3389/fmicb.2020.581903 |
0.585 |
|
| 2020 |
Dahlhausen KE, Jospin G, Coil DA, Eisen JA, Wilkins LGE. Isolation and sequence-based characterization of a koala symbiont: . Peerj. 8: e10177. PMID 33150080 DOI: 10.7717/peerj.10177 |
0.469 |
|
| 2020 |
Beam JP, Becraft ED, Brown JM, Schulz F, Jarett JK, Bezuidt O, Poulton NJ, Clark K, Dunfield PF, Ravin NV, Spear JR, Hedlund BP, Kormas KA, Sievert SM, Elshahed MS, ... ... Eisen JA, et al. Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN. Frontiers in Microbiology. 11: 1848. PMID 33013724 DOI: 10.3389/Fmicb.2020.01848 |
0.484 |
|
| 2020 |
Ettinger CL, Eisen JA. Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina. Plos One. 15: e0236135. PMID 32697800 DOI: 10.1371/Journal.Pone.0236135 |
0.357 |
|
| 2020 |
Coil DA, Neches RY, Lang JM, Jospin G, Brown WE, Cavalier D, Hampton-Marcell J, Gilbert JA, Eisen JA. Bacterial communities associated with cell phones and shoes. Peerj. 8: e9235. PMID 32551196 DOI: 10.7717/Peerj.9235 |
0.783 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... Eisen JA, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X |
0.495 |
|
| 2020 |
Grettenberger CL, Sumner DY, Wall K, Brown CT, Eisen JA, Mackey TJ, Hawes I, Jospin G, Jungblut AD. A phylogenetically novel cyanobacterium most closely related to Gloeobacter. The Isme Journal. PMID 32424249 DOI: 10.1038/S41396-020-0668-5 |
0.453 |
|
| 2020 |
Dillon ML, Hawes I, Jungblut AD, Mackey TJ, Eisen JA, Doran PT, Sumner DY. Environmental control on the distribution of metabolic strategies of benthic microbial mats in Lake Fryxell, Antarctica. Plos One. 15: e0231053. PMID 32282803 DOI: 10.1371/Journal.Pone.0231053 |
0.35 |
|
| 2020 |
Coil DA, Jospin G, Eisen JA. Draft Genome Analysis of DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function. Journal of Genomics. 8: 25-29. PMID 32190126 DOI: 10.7150/jgen.43162 |
0.317 |
|
| 2020 |
Altamia MA, Shipway JR, Stein D, Betcher MA, Fung JM, Jospin G, Eisen J, Haygood MG, Distel DL. sp. nov., a marine, cellulolytic endosymbiotic bacterium isolated from the gills of the wood-boring mollusc (Bivalvia: Teredinidae) and emended description of the genus . International Journal of Systematic and Evolutionary Microbiology. PMID 32100688 DOI: 10.1099/Ijsem.0.004049 |
0.414 |
|
| 2020 |
Wilkins LGE, Ettinger CL, Jospin G, Eisen JA. Author Correction: Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia. Scientific Reports. 10: 3454. PMID 32081994 DOI: 10.1038/S41598-020-60390-Y |
0.422 |
|
| 2020 |
Brown CL, Garner E, Jospin G, Coil DA, Schwake DO, Eisen JA, Mukhopadhyay B, Pruden AJ. Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus. Plos One. 15: e0223033. PMID 31935215 DOI: 10.1371/Journal.Pone.0223033 |
0.422 |
|
| 2020 |
Alexiev A, Vann LE, Lang JM, Eisen JA. Bacterial Community Sequences of Submerged Aquatic Vegetation in the Potomac River. Microbiology Resource Announcements. 9. PMID 31896632 DOI: 10.1128/MRA.01175-19 |
0.816 |
|
| 2019 |
Ettinger CL, Eisen JA. Characterization of the Mycobiome of the Seagrass, , Reveals Putative Associations With Marine Chytrids. Frontiers in Microbiology. 10: 2476. PMID 31749781 DOI: 10.3389/Fmicb.2019.02476 |
0.443 |
|
| 2019 |
Villela HDM, Vilela CLS, Assis JM, Varona N, Burke C, Coil DA, Eisen JA, Peixoto RS. Prospecting Microbial Strains for Bioremediation and Probiotics Development for Metaorganism Research and Preservation. Journal of Visualized Experiments : Jove. PMID 31736494 DOI: 10.3791/60238 |
0.325 |
|
| 2019 |
Wilkins LGE, Leray M, O'Dea A, Yuen B, Peixoto R, Pereira TJ, Bik HM, Coil DA, Duffy JE, Herre EA, Lessios H, Lucey NM, Mejia LC, Rasher DB, Sharp K, ... ... Eisen JA, et al. Host-associated microbiomes drive structure and function of marine ecosystems. Plos Biology. 17: e3000533. PMID 31710600 DOI: 10.1371/Journal.Pbio.3000533 |
0.788 |
|
| 2019 |
Garner E, Brown CL, Schwake DO, Rhoads WJ, Arango-Argoty G, Zhang L, Jospin G, Coil DA, Eisen JA, Edwards MA, Pruden A. Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016. Emerging Infectious Diseases. 25: 2013-2020. PMID 31625848 DOI: 10.3201/Eid2511.181032 |
0.368 |
|
| 2019 |
Yamaguchi MS, Ganz HH, Cho AW, Zaw TH, Jospin G, McCartney MM, Davis CE, Eisen JA, Coil DA. Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling. Plos One. 14: e0216846. PMID 31518350 DOI: 10.1371/Journal.Pone.0216846 |
0.744 |
|
| 2019 |
Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J. Early-Career Scientists Shaping the World. Msystems. 4. PMID 31219787 DOI: 10.1128/mSystems.00196-19 |
0.565 |
|
| 2019 |
Coil DA, Jospin G, Darling AE, Wallis C, Davis IJ, Harris S, Eisen JA, Holcombe LJ, O'Flynn C. Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment. Plos One. 14: e0214354. PMID 31181071 DOI: 10.1371/Journal.Pone.0214354 |
0.742 |
|
| 2019 |
Wilkins LGE, Ettinger CL, Jospin G, Eisen JA. Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia. Scientific Reports. 9: 3059. PMID 30816235 DOI: 10.1038/S41598-019-39576-6 |
0.544 |
|
| 2019 |
Bik HM, Alexiev A, Aulakh SK, Bharadwaj L, Flanagan J, Haggerty JM, Hird SM, Jospin G, Lang JM, Sauder LA, Neufeld JD, Shaver A, Sethi A, Eisen JA, Coil DA. Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria. Msphere. 4. PMID 30787117 DOI: 10.1128/mSphere.00043-19 |
0.796 |
|
| 2018 |
Rosado PM, Leite DCA, Duarte GAS, Chaloub RM, Jospin G, Nunes da Rocha U, P Saraiva J, Dini-Andreote F, Eisen JA, Bourne DG, Peixoto RS. Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation. The Isme Journal. PMID 30518818 DOI: 10.1038/S41396-018-0323-6 |
0.324 |
|
| 2018 |
Hird SM, Ganz H, Eisen JA, Boyce WM. The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status. Msphere. 3. PMID 30355662 DOI: 10.1128/mSphere.00382-18 |
0.78 |
|
| 2018 |
Van Deynze A, Zamora P, Delaux PM, Heitmann C, Jayaraman D, Rajasekar S, Graham D, Maeda J, Gibson D, Schwartz KD, Berry AM, Bhatnagar S, Jospin G, Darling A, Jeannotte R, ... ... Eisen JA, et al. Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota. Plos Biology. 16: e2006352. PMID 30086128 DOI: 10.1371/Journal.Pbio.2006352 |
0.778 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Eisen JA, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/Nbt0718-660A |
0.362 |
|
| 2018 |
Horng KR, Ganz HH, Eisen JA, Marks SL. Effects of preservation method on canine () fecal microbiota. Peerj. 6: e4827. PMID 29844978 DOI: 10.7717/Peerj.4827 |
0.712 |
|
| 2018 |
Dahlhausen KE, Doroud L, Firl AJ, Polkinghorne A, Eisen JA. Characterization of shifts of koala (intestinal microbial communities associated with antibiotic treatment. Peerj. 6: e4452. PMID 29576947 DOI: 10.7717/Peerj.4452 |
0.787 |
|
| 2018 |
Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA. Correction: A microbial survey of the International Space Station (ISS). Peerj. 5. PMID 29498380 DOI: 10.7717/Peerj.4029/Correction-1 |
0.761 |
|
| 2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Eisen JA, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/Nbt0218-196A |
0.436 |
|
| 2018 |
Ettinger CL, Wilkins LGE, Dahlhausen KE, Ghose SL, Oberbauer D, Eisen JA, Coil DA. Even Superheroes Need Help Sometimes: Three Incredible Tales of Microbial Symbiosis Frontiers For Young Minds. 6. DOI: 10.3389/Frym.2018.00050 |
0.343 |
|
| 2018 |
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, et al. Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life Nature Biotechnology. 36: 368-368. DOI: 10.1038/Nbt0418-368C |
0.34 |
|
| 2017 |
Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA. A microbial survey of the International Space Station (ISS). Peerj. 5: e4029. PMID 29492330 DOI: 10.7717/Peerj.4029 |
0.797 |
|
| 2017 |
Becraft ED, Woyke T, Jarett J, Ivanova N, Godoy-Vitorino F, Poulton N, Brown JM, Brown J, Lau MCY, Onstott T, Eisen JA, Moser D, Stepanauskas R. Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla. Frontiers in Microbiology. 8: 2264. PMID 29234309 DOI: 10.3389/Fmicb.2017.02264 |
0.509 |
|
| 2017 |
Wilbanks EG, Salman-Carvalho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH. The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria. Frontiers in Microbiology. 8: 1623. PMID 28928719 DOI: 10.3389/Fmicb.2017.01623 |
0.761 |
|
| 2017 |
Ettinger CL, Williams SL, Abbott JM, Stachowicz JJ, Eisen JA. Microbiome succession during ammonification in eelgrass bed sediments. Peerj. 5: e3674. PMID 28828269 DOI: 10.7717/Peerj.3674 |
0.321 |
|
| 2017 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Eisen JA, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/Nbt.3893 |
0.517 |
|
| 2017 |
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, et al. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. PMID 28604660 DOI: 10.1038/Nbt.3886 |
0.557 |
|
| 2017 |
Mukhopadhyay R, Joaquin J, Hogue R, Fitzgerald S, Jospin G, Mars K, Eisen JA, Chaturvedi V. Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung Disease Using Single-Molecule Real-Time Sequencing Technology. Genome Announcements. 5. PMID 28473398 DOI: 10.1128/Genomea.00317-17 |
0.464 |
|
| 2017 |
Ettinger CL, Voerman SE, Lang JM, Stachowicz JJ, Eisen JA. Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge. Peerj. 5: e3246. PMID 28462046 DOI: 10.7717/Peerj.3246 |
0.601 |
|
| 2017 |
Mukhopadhyay R, Joaquin J, Hogue R, Kilaru A, Jospin G, Mars K, Eisen JA, Chaturvedi V. Complete Genome Sequence of a Paenalcaligenes hominis Strain Isolated from a Paraplegic Patient with Neurogenic Bladder Using Single-Molecule Real-Time Sequencing Technology. Genome Announcements. 5. PMID 28450518 DOI: 10.1128/Genomea.00252-17 |
0.53 |
|
| 2017 |
Fahimipour AK, Kardish MR, Lang JM, Green JL, Eisen JA, Stachowicz JJ. Global-scale structure of the eelgrass microbiome. Applied and Environmental Microbiology. PMID 28411219 DOI: 10.1128/Aem.03391-16 |
0.61 |
|
| 2017 |
Lujan KM, Eisen JA, Coil DA. Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, Colwellia sp. Strain UCD-KL20, Shewanella sp. Strain UCD-KL12, and Shewanella sp. Strain UCD-KL21, Isolated from Seagrass. Genome Announcements. 5. PMID 28360178 DOI: 10.1128/Genomea.00023-17 |
0.423 |
|
| 2017 |
Dahms PA, Martin AL, Ganz HH, Eisen JA, Coil DA. Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac. Genome Announcements. 5. PMID 28336587 DOI: 10.1128/Genomea.00034-17 |
0.771 |
|
| 2017 |
Ganz HH, Doroud L, Firl AJ, Hird SM, Eisen JA, Boyce WM. Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses. Msystems. 2. PMID 28293681 DOI: 10.1128/mSystems.00188-16 |
0.764 |
|
| 2017 |
Tokajian S, Salloum T, Eisen JA, Jospin G, Farra A, Mokhbat JE, Coil DA. Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon. Future Microbiology. 12: 213-226. PMID 28262042 DOI: 10.2217/Fmb-2017-0171 |
0.383 |
|
| 2017 |
Klein BA, Lemon KP, Gajare P, Jospin G, Eisen JA, Coil DA. Draft Genome Sequences of Dermacoccus nishinomiyaensis Strains UCD-KPL2534 and UCD-KPL2528 Isolated from an Indoor Track Facility. Genome Announcements. 5. PMID 28232444 DOI: 10.1128/Genomea.01652-16 |
0.514 |
|
| 2017 |
Kincheloe GN, Eisen JA, Coil DA. Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria). Genome Announcements. 5. PMID 28183767 DOI: 10.1128/Genomea.01599-16 |
0.448 |
|
| 2017 |
Jiao JY, Carro L, Liu L, Gao XY, Zhang XT, Hozzein WN, Lapidus A, Huntemann M, Reddy TB, Varghese N, Hadjithomas M, Ivanova NN, Göker M, Pillay M, Eisen JA, et al. Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds. Standards in Genomic Sciences. 12: 21. PMID 28174619 DOI: 10.1186/S40793-017-0226-6 |
0.492 |
|
| 2017 |
Lymperopoulou DS, Coil DA, Schichnes D, Lindow SE, Jospin G, Eisen JA, Adams RI. Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72. Standards in Genomic Sciences. 12: 17. PMID 28163826 DOI: 10.1186/S40793-017-0223-9 |
0.429 |
|
| 2016 |
De Vries DR, Martin AL, Ganz HH, Eisen JA, Coil DA. Draft Genome Sequence of Enterococcus faecalis Strain UCD-PD3. Genome Announcements. 4. PMID 27979940 DOI: 10.1128/Genomea.01386-16 |
0.772 |
|
| 2016 |
Ibrahim J, Eisen JA, Jospin G, Coil DA, Khazen G, Tokajian S. Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections. Plos One. 11: e0168177. PMID 27977735 DOI: 10.1371/Journal.Pone.0168177 |
0.478 |
|
| 2016 |
Klein BA, Lemon KP, Faller LL, Jospin G, Eisen JA, Coil DA. Draft Genome Sequence of Curtobacterium sp. Strain UCD-KPL2560 (Phylum Actinobacteria). Genome Announcements. 4. PMID 27795241 DOI: 10.1128/Genomea.01040-16 |
0.51 |
|
| 2016 |
Shehata HR, Ettinger CL, Eisen JA, Raizada MN. Genes Required for the Anti-fungal Activity of a Bacterial Endophyte Isolated from a Corn Landrace Grown Continuously by Subsistence Farmers Since 1000 BC. Frontiers in Microbiology. 7: 1548. PMID 27757101 DOI: 10.3389/Fmicb.2016.01548 |
0.341 |
|
| 2016 |
Koenigsaecker TM, Eisen JA, Coil DA. Draft Genome Sequence of Gordonia sp. Strain UCD-TK1 (Phylum Actinobacteria). Genome Announcements. 4. PMID 27738036 DOI: 10.1128/Genomea.01121-16 |
0.447 |
|
| 2016 |
Lujan KM, Eisen JA, Coil DA. Draft Genome Sequence of Tenacibaculum soleae UCD-KL19. Genome Announcements. 4. PMID 27738035 DOI: 10.1128/Genomea.01120-16 |
0.491 |
|
| 2016 |
Nelson RL, Castro MA, Katti M, Eisen JA, Van Laar TA. Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos. Genome Announcements. 4. PMID 27540060 DOI: 10.1128/Genomea.00807-16 |
0.466 |
|
| 2016 |
Alexiev A, Coil DA, Jospin G, Eisen JA, Adams JY. Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis. Genome Announcements. 4. PMID 27151785 DOI: 10.1128/Genomea.00234-16 |
0.472 |
|
| 2016 |
Coil DA, Neches RY, Lang JM, Brown WE, Severance M, Cavalier D, Eisen JA. Growth of 48 built environment bacterial isolates on board the International Space Station (ISS). Peerj. 4: e1842. PMID 27019789 DOI: 10.7717/Peerj.1842 |
0.791 |
|
| 2016 |
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment. Genome Announcements. 4. PMID 26988038 DOI: 10.1128/Genomea.00092-16 |
0.695 |
|
| 2016 |
Alexiev A, Krusor ML, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequence of Cobetia sp. UCD-24C, Isolated from Roots and Leaves of the Seagrass Zostera marina. Genome Announcements. 4. PMID 26966219 DOI: 10.1128/Genomea.00116-16 |
0.669 |
|
| 2016 |
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequences of Two Vibrio splendidus Strains, Isolated from Seagrass Sediment. Genome Announcements. 4. PMID 26893436 DOI: 10.1128/Genomea.01769-15 |
0.695 |
|
| 2016 |
Alexiev A, Krusor ML, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina. Genome Announcements. 4. PMID 26893412 DOI: 10.1128/Genomea.00010-16 |
0.67 |
|
| 2016 |
Tokajian S, Eisen JA, Jospin G, Hamze M, Rafei R, Salloum T, Ibrahim J, Coil DA. Draft Genome Sequences of Acinetobacter baumannii Strains Harboring the blaNDM-1 Gene Isolated in Lebanon from Civilians Wounded during the Syrian Civil War. Genome Announcements. 4. PMID 26823599 DOI: 10.1128/Genomea.01678-15 |
0.508 |
|
| 2016 |
Tokajian S, Eisen JA, Jospin G, Matar G, Araj GF, Coil DA. Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon. Genome Announcements. 4. PMID 26823584 DOI: 10.1128/Genomea.01632-15 |
0.491 |
|
| 2016 |
Coil DA, Jospin G, Eisen JA, Adams JY. Additional Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients. Genome Announcements. 4. PMID 26798108 DOI: 10.1128/Genomea.01614-15 |
0.491 |
|
| 2016 |
Adams RI, Bhangar S, Dannemiller KC, Eisen JA, Fierer N, Gilbert JA, Green JL, Marr LC, Miller SL, Siegel JA, Stephens B, Waring MS, Bibby K. Ten questions concerning the microbiomes of buildings Building and Environment. 109: 224-234. DOI: 10.1016/J.Buildenv.2016.09.001 |
0.345 |
|
| 2015 |
Coil DA, Flanagan JC, Stump A, Alexiev A, Lang JM, Eisen JA. Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter. Peerj. 3: e1400. PMID 26587357 DOI: 10.7717/Peerj.1400 |
0.588 |
|
| 2015 |
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes). Genome Announcements. 3. PMID 26586901 DOI: 10.1128/Genomea.01376-15 |
0.721 |
|
| 2015 |
Coil DA, Benardini JN, Eisen JA. Draft Genome Sequence of Bacillus safensis JPL-MERTA-8-2, Isolated from a Mars-Bound Spacecraft. Genome Announcements. 3. PMID 26586895 DOI: 10.1128/Genomea.01360-15 |
0.518 |
|
| 2015 |
Coil DA, Eisen JA. Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado. Genome Announcements. 3. PMID 26586867 DOI: 10.1128/Genomea.00856-15 |
0.468 |
|
| 2015 |
O'Flynn C, Deusch O, Darling A, Eisen JA, Wallis C, Davis I, Harris S. Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthesis within the Prevalent Canine Oral Species Porphyromonas cangingivalis. Genome Biology and Evolution. PMID 26568374 DOI: 10.1093/Gbe/Evv220 |
0.697 |
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| 2015 |
Jungblut AD, Hawes I, Mackey TJ, Krusor M, Doran PT, Sumner DY, Eisen JA, Hillman C, Goroncy AK. Microbial mat communities along an oxygen gradient in a perennially ice-covered Antarctic lake. Applied and Environmental Microbiology. PMID 26567300 DOI: 10.1128/Aem.02699-15 |
0.317 |
|
| 2015 |
Nayfach S, Bradley PH, Wyman SK, Laurent TJ, Williams A, Eisen JA, Pollard KS, Sharpton TJ. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes. Plos Computational Biology. 11: e1004573. PMID 26565399 DOI: 10.1371/Journal.Pcbi.1004573 |
0.796 |
|
| 2015 |
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria). Genome Announcements. 3. PMID 26543114 DOI: 10.1128/Genomea.01276-15 |
0.707 |
|
| 2015 |
Betts MN, Jospin G, Eisen JA, Coil DA. Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes). Genome Announcements. 3. PMID 26472846 DOI: 10.1128/Genomea.01209-15 |
0.501 |
|
| 2015 |
Whitman WB, Woyke T, Klenk HP, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G, Hugenholtz P, Kyrpides NC. Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Standards in Genomic Sciences. 10: 26. PMID 26203337 DOI: 10.1186/S40793-015-0017-X |
0.436 |
|
| 2015 |
Dunitz MI, Lang JM, Jospin G, Darling AE, Eisen JA, Coil DA. Swabs to genomes: a comprehensive workflow. Peerj. 3: e960. PMID 26020012 DOI: 10.7717/Peerj.960 |
0.801 |
|
| 2015 |
Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, ... Eisen JA, et al. Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences of the United States of America. 112: E2813-9. PMID 25964331 DOI: 10.1073/Pnas.1503928112 |
0.495 |
|
| 2015 |
Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA. Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon. Frontiers in Cellular and Infection Microbiology. 5: 32. PMID 25905047 DOI: 10.3389/Fcimb.2015.00032 |
0.46 |
|
| 2015 |
Coil DA, Alexiev A, Wallis C, O'Flynn C, Deusch O, Davis I, Horsfall A, Kirkwood N, Jospin G, Eisen JA, Harris S, Darling AE. Draft genome sequences of 26 porphyromonas strains isolated from the canine oral microbiome. Genome Announcements. 3. PMID 25858832 DOI: 10.1128/Genomea.00187-15 |
0.679 |
|
| 2015 |
Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA. Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria). Genome Announcements. 3. PMID 25635017 DOI: 10.1128/Genomea.01490-14 |
0.832 |
|
| 2015 |
Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA. Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae). Genome Announcements. 3. PMID 25635016 DOI: 10.1128/Genomea.01489-14 |
0.824 |
|
| 2015 |
Ettinger CL, Shehata HR, Johnston-Monje D, Raizada MN, Eisen JA. Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum Proteobacteria). Genome Announcements. 3. PMID 25614570 DOI: 10.1128/Genomea.01462-14 |
0.481 |
|
| 2015 |
Ettinger CL, Mousa WM, Raizada MN, Eisen JA. Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (Phylum Proteobacteria). Genome Announcements. 3. PMID 25614569 DOI: 10.1128/Genomea.01461-14 |
0.475 |
|
| 2015 |
Edwards J, Johnson C, Santos-Medellín C, Lurie E, Podishetty NK, Bhatnagar S, Eisen JA, Sundaresan V. Structure, variation, and assembly of the root-associated microbiomes of rice. Proceedings of the National Academy of Sciences of the United States of America. 112: E911-20. PMID 25605935 DOI: 10.1073/Pnas.1414592112 |
0.782 |
|
| 2015 |
Eisen J. Methylisothiazolinone in household items - a growing (or well, killing) problem #germophobia The Winnower. DOI: 10.15200/Winn.142971.16225 |
0.329 |
|
| 2015 |
Eisen J. What does the term microbiome mean? And where did it come from? A bit of a surprise .. The Winnower. DOI: 10.15200/Winn.142971.16196 |
0.416 |
|
| 2015 |
Kamel Mousa W, Shearer C, Ettinger C, Eisen J, Raizada M. Merging genome mining with ancient three-way species co-evolution may open a novel gate for informative natural products discovery Planta Medica. 81. DOI: 10.1055/S-0035-1556327 |
0.417 |
|
| 2014 |
Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, ... ... Eisen JA, et al. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Standards in Genomic Sciences. 9: 10. PMID 25780503 DOI: 10.1186/1944-3277-9-10 |
0.492 |
|
| 2014 |
Lang JM, Eisen JA, Zivkovic AM. The microbes we eat: abundance and taxonomy of microbes consumed in a day's worth of meals for three diet types. Peerj. 2: e659. PMID 25538865 DOI: 10.7717/Peerj.659 |
0.559 |
|
| 2014 |
Dunitz MI, Coil DA, Jospin G, Eisen JA, Adams JY. Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients. Genome Announcements. 2. PMID 25523766 DOI: 10.1128/Genomea.01278-14 |
0.485 |
|
| 2014 |
Becker EA, Seitzer PM, Tritt A, Larsen D, Krusor M, Yao AI, Wu D, Madern D, Eisen JA, Darling AE, Facciotti MT. Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response. Plos Genetics. 10: e1004784. PMID 25393412 DOI: 10.1371/Journal.Pgen.1004784 |
0.835 |
|
| 2014 |
Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM. The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis. Bmc Genomics. 15: 924. PMID 25342549 DOI: 10.1186/1471-2164-15-924 |
0.839 |
|
| 2014 |
Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, ... ... Eisen JA, et al. Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring. Standards in Genomic Sciences. 9: 1105-17. PMID 25197486 DOI: 10.4056/Sigs.3016383 |
0.536 |
|
| 2014 |
Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences. 9: 1076-88. PMID 25197484 DOI: 10.4056/Sigs.5138968 |
0.548 |
|
| 2014 |
Kyrpides NC, Woyke T, Eisen JA, Garrity G, Lilburn TG, Beck BJ, Whitman WB, Hugenholtz P, Klenk HP. Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project. Standards in Genomic Sciences. 9: 1278-84. PMID 25197443 DOI: 10.4056/Sigs.5068949 |
0.509 |
|
| 2014 |
Holland-Moritz HE, Coil DA, Badger JH, Dmitrov GI, Khouri H, Ward NL, Robb FT, Eisen JA. Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1. Genome Announcements. 2. PMID 25146141 DOI: 10.1128/Genomea.00833-14 |
0.759 |
|
| 2014 |
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920 |
0.546 |
|
| 2014 |
Lee RD, Jospin G, Coil DA, Eisen JA. Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum Proteobacteria). Genome Announcements. 2. PMID 25035337 DOI: 10.1128/Genomea.00717-14 |
0.504 |
|
| 2014 |
Bik HM, Coil DA, Eisen JA. microBEnet: lessons learned from building an interdisciplinary scientific community in the online sphere. Plos Biology. 12: e1001884. PMID 24937755 DOI: 10.1371/Journal.Pbio.1001884 |
0.65 |
|
| 2014 |
Beitel CW, Froenicke L, Lang JM, Korf IF, Michelmore RW, Eisen JA, Darling AE. Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products. Peerj. 2: e415. PMID 24918035 DOI: 10.7717/Peerj.415 |
0.775 |
|
| 2014 |
Alexiev A, Coil DA, Badger JH, Enticknap J, Ward N, Robb FT, Eisen JA. Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265. Genome Announcements. 2. PMID 24831154 DOI: 10.1128/Genomea.00470-14 |
0.755 |
|
| 2014 |
Tokajian S, Eisen JA, Jospin G, Coil DA. Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon. Genome Announcements. 2. PMID 24831139 DOI: 10.1128/Genomea.00358-14 |
0.464 |
|
| 2014 |
Dunitz MI, James PM, Jospin G, Eisen JA, Coil DA, Chandler JA. Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae. Genome Announcements. 2. PMID 24762940 DOI: 10.1128/Genomea.00349-14 |
0.472 |
|
| 2014 |
Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA. Draft Genome Sequences of Extended-Spectrum β-Lactamase-Producing Escherichia coli Strains Isolated from Patients in Lebanon. Genome Announcements. 2. PMID 24558252 DOI: 10.1128/Genomea.00123-14 |
0.464 |
|
| 2014 |
Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA. Draft Genome Sequence of Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae Isolated from a Patient in Lebanon. Genome Announcements. 2. PMID 24558251 DOI: 10.1128/Genomea.00121-14 |
0.504 |
|
| 2014 |
Coil DA, Badger JH, Forberger HC, Riggs F, Madupu R, Fedorova N, Ward N, Robb FT, Eisen JA. Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12. Genome Announcements. 2. PMID 24558247 DOI: 10.1128/Genomea.00109-14 |
0.726 |
|
| 2014 |
Darling AE, Jospin G, Lowe E, Matsen FA, Bik HM, Eisen JA. PhyloSift: phylogenetic analysis of genomes and metagenomes. Peerj. 2: e243. PMID 24482762 DOI: 10.7717/Peerj.243 |
0.822 |
|
| 2014 |
Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ. Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environmental Microbiology. 16: 3398-415. PMID 24428801 DOI: 10.1111/1462-2920.12388 |
0.787 |
|
| 2014 |
Glass EM, Dribinsky Y, Yilmaz P, Levin H, Van Pelt R, Wendel D, Wilke A, Eisen JA, Huse S, Shipanova A, Sogin M, Stajich J, Knight R, Meyer F, Schriml LM. MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment. The Isme Journal. 8: 1-3. PMID 24152717 DOI: 10.1038/Ismej.2013.176 |
0.353 |
|
| 2014 |
Eisen J. A phylogeny driven genomic encyclopedia of bacteria and archaea F1000research. 5. DOI: 10.7490/F1000Research.1096941.1 |
0.506 |
|
| 2014 |
Eisen J. Something about the Lake Arrowhead Microbial Genomes Meeting F1000research. 5. DOI: 10.7490/F1000Research.1096894.1 |
0.499 |
|
| 2013 |
Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl. Standards in Genomic Sciences. 9: 83-92. PMID 24501647 DOI: 10.4056/Sigs.4338002 |
0.497 |
|
| 2013 |
Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences. 9: 57-70. PMID 24501645 DOI: 10.4056/Sigs.4237901 |
0.504 |
|
| 2013 |
Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, et al. Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013. Standards in Genomic Sciences. 8: 561-70. PMID 24501639 DOI: 10.4056/Sigs.4638348 |
0.368 |
|
| 2013 |
Coil DA, Lo JR, Chen R, Ward N, Robb FT, Eisen JA. Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915. Genome Announcements. 1. PMID 24233593 DOI: 10.1128/Genomea.00953-13 |
0.528 |
|
| 2013 |
Wu D, Jospin G, Eisen JA. Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups. Plos One. 8: e77033. PMID 24146954 DOI: 10.1371/Journal.Pone.0077033 |
0.736 |
|
| 2013 |
Martin ME, Bhatnagar S, George MD, Paster BJ, Canfield DR, Eisen JA, Solnick JV. The impact of Helicobacter pylori infection on the gastric microbiota of the rhesus macaque. Plos One. 8: e76375. PMID 24116104 DOI: 10.1371/Journal.Pone.0076375 |
0.772 |
|
| 2013 |
Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva. Standards in Genomic Sciences. 8: 228-38. PMID 23991255 DOI: 10.4056/Sigs.3617113 |
0.531 |
|
| 2013 |
Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)). Standards in Genomic Sciences. 8: 177-87. PMID 23991250 DOI: 10.4056/Sigs.3637201 |
0.521 |
|
| 2013 |
Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift. Standards in Genomic Sciences. 8: 165-76. PMID 23991249 DOI: 10.4056/Sigs.3607108 |
0.512 |
|
| 2013 |
Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nature Communications. 4: 2120. PMID 23979677 DOI: 10.1038/Ncomms3120 |
0.716 |
|
| 2013 |
Abt B, Göker M, Scheuner C, Han C, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, ... ... Eisen JA, et al. Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Standards in Genomic Sciences. 8: 88-105. PMID 23961314 DOI: 10.4056/Sigs.3096473 |
0.521 |
|
| 2013 |
Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)). Standards in Genomic Sciences. 8: 47-57. PMID 23961311 DOI: 10.4056/Sigs.3547050 |
0.537 |
|
| 2013 |
Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng JF, Tapia R, Goodwin LA, Bruce D, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, ... ... Eisen JA, et al. High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)). Standards in Genomic Sciences. 8: 37-46. PMID 23961310 DOI: 10.4056/Sigs.3537045 |
0.549 |
|
| 2013 |
Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)). Standards in Genomic Sciences. 8: 26-36. PMID 23961309 DOI: 10.4056/Sigs.3527032 |
0.539 |
|
| 2013 |
Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Standards in Genomic Sciences. 8: 15-25. PMID 23961308 DOI: 10.4056/Sigs.3507020 |
0.547 |
|
| 2013 |
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, ... Eisen JA, et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature. 499: 431-7. PMID 23851394 DOI: 10.1038/Nature12352 |
0.739 |
|
| 2013 |
Holland-Moritz HE, Bevans DR, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria). Genome Announcements. 1. PMID 23792744 DOI: 10.1128/Genomea.00325-13 |
0.794 |
|
| 2013 |
Flanagan JC, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria). Genome Announcements. 1. PMID 23682147 DOI: 10.1128/Genomea.00244-13 |
0.803 |
|
| 2013 |
Diep AL, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria). Genome Announcements. 1. PMID 23661480 DOI: 10.1128/Genomea.00197-13 |
0.802 |
|
| 2013 |
Coil DA, Doctor JI, Lang JM, Darling AE, Eisen JA. Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria). Genome Announcements. 1. PMID 23661474 DOI: 10.1128/Genomea.00172-13 |
0.781 |
|
| 2013 |
Lang JM, Darling AE, Eisen JA. Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices. Plos One. 8: e62510. PMID 23638103 DOI: 10.1371/Journal.Pone.0062510 |
0.786 |
|
| 2013 |
Bendiks ZA, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria). Genome Announcements. 1: e0012013. PMID 23516225 DOI: 10.1128/Genomea.00120-13 |
0.792 |
|
| 2013 |
Lo JR, Lang JM, Darling AE, Eisen JA, Coil DA. Draft genome sequence of an Actinobacterium, Brachybacterium muris strain UCD-AY4. Genome Announcements. 1: e0008613. PMID 23516213 DOI: 10.1128/Genomea.00086-13 |
0.775 |
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| 2013 |
Rands CM, Darling A, Fujita M, Kong L, Webster MT, Clabaut C, Emes RD, Heger A, Meader S, Hawkins MB, Eisen MB, Teiling C, Affourtit J, Boese B, Grant PR, ... ... Eisen JA, et al. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. Bmc Genomics. 14: 95. PMID 23402223 DOI: 10.1186/1471-2164-14-95 |
0.713 |
|
| 2013 |
Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, Calteau A, Cai F, Tandeau de Marsac N, Rippka R, Herdman M, Sivonen K, Coursin T, Laurent T, Goodwin L, ... ... Eisen JA, et al. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 110: 1053-8. PMID 23277585 DOI: 10.1073/Pnas.1217107110 |
0.778 |
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| 2013 |
Traag BA, Pugliese A, Eisen JA, Losick R. Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis. Journal of Bacteriology. 195: 253-60. PMID 23123912 DOI: 10.1128/Jb.01778-12 |
0.322 |
|
| 2012 |
Eisen JA. Badomics words and the power and peril of the ome-meme. Gigascience. 1: 6. PMID 23587201 DOI: 10.1186/2047-217X-1-6 |
0.31 |
|
| 2012 |
Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)). Standards in Genomic Sciences. 7: 120-30. PMID 23450211 DOI: 10.4056/Sigs.3296896 |
0.493 |
|
| 2012 |
Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)). Standards in Genomic Sciences. 7: 107-19. PMID 23450183 DOI: 10.4056/Sigs.3216895 |
0.521 |
|
| 2012 |
Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)). Standards in Genomic Sciences. 7: 210-20. PMID 23408178 DOI: 10.4056/Sigs.3117229 |
0.516 |
|
| 2012 |
Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)). Standards in Genomic Sciences. 6: 1-13. PMID 23407703 DOI: 10.4056/Sigs.2736042 |
0.514 |
|
| 2012 |
Kembel SW, Wu M, Eisen JA, Green JL. Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. Plos Computational Biology. 8: e1002743. PMID 23133348 DOI: 10.1371/Journal.Pcbi.1002743 |
0.734 |
|
| 2012 |
Sharpton TJ, Jospin G, Wu D, Langille MG, Pollard KS, Eisen JA. Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. Bmc Bioinformatics. 13: 264. PMID 23061897 DOI: 10.1186/1471-2105-13-264 |
0.818 |
|
| 2012 |
Jiang X, Langille MG, Neches RY, Elliot M, Levin SA, Eisen JA, Weitz JS, Dushoff J. Functional biogeography of ocean microbes revealed through non-negative matrix factorization. Plos One. 7: e43866. PMID 23049741 DOI: 10.1371/Journal.Pone.0043866 |
0.803 |
|
| 2012 |
Tritt A, Eisen JA, Facciotti MT, Darling AE. An integrated pipeline for de novo assembly of microbial genomes. Plos One. 7: e42304. PMID 23028432 DOI: 10.1371/Journal.Pone.0042304 |
0.794 |
|
| 2012 |
Chandler JA, Eisen JA, Kopp A. Yeast communities of diverse Drosophila species: comparison of two symbiont groups in the same hosts. Applied and Environmental Microbiology. 78: 7327-36. PMID 22885750 DOI: 10.1128/Aem.01741-12 |
0.376 |
|
| 2012 |
Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT. Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. Plos One. 7: e41389. PMID 22848480 DOI: 10.1371/Journal.Pone.0041389 |
0.845 |
|
| 2012 |
Copeland A, Zeytun A, Yassawong M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Mavromatis K, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). Standards in Genomic Sciences. 6: 240-50. PMID 22768367 DOI: 10.4056/Sigs.2756060 |
0.519 |
|
| 2012 |
Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)). Standards in Genomic Sciences. 6: 230-9. PMID 22768366 DOI: 10.4056/Sigs.2726028 |
0.547 |
|
| 2012 |
Mavromatis K, Chertkov O, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Bruce D, Goodwin LA, Pitluck S, Huntemann M, Liolios K, ... ... Eisen JA, et al. Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). Standards in Genomic Sciences. 6: 210-9. PMID 22768364 DOI: 10.4056/Sigs.2816096 |
0.543 |
|
| 2012 |
Abt B, Han C, Scheuner C, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Standards in Genomic Sciences. 6: 194-209. PMID 22768363 DOI: 10.4056/Sigs.2796069 |
0.514 |
|
| 2012 |
Huntemann M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)). Standards in Genomic Sciences. 6: 185-93. PMID 22768362 DOI: 10.4056/Sigs.2786069 |
0.547 |
|
| 2012 |
Anderson I, Held B, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)). Standards in Genomic Sciences. 6: 174-84. PMID 22768361 DOI: 10.4056/Sigs.2746047 |
0.52 |
|
| 2012 |
Anderson I, Saunders E, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)). Standards in Genomic Sciences. 6: 155-64. PMID 22768359 DOI: 10.4056/Sigs.2665915 |
0.538 |
|
| 2012 |
Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)). Standards in Genomic Sciences. 6: 145-54. PMID 22768358 DOI: 10.4056/Sigs.2475579 |
0.552 |
|
| 2012 |
Han C, Kotsyurbenko O, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)). Standards in Genomic Sciences. 6: 94-103. PMID 22675602 DOI: 10.4056/Sigs.2456004 |
0.501 |
|
| 2012 |
Copeland A, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin LA, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. Standards in Genomic Sciences. 6: 21-30. PMID 22675595 DOI: 10.4056/Sigs.2435521 |
0.503 |
|
| 2012 |
Langille MG, Laird MR, Hsiao WW, Chiu TA, Eisen JA, Brinkman FS. MicrobeDB: a locally maintainable database of microbial genomic sequences. Bioinformatics (Oxford, England). 28: 1947-8. PMID 22576174 DOI: 10.1093/Bioinformatics/Bts273 |
0.809 |
|
| 2012 |
Wu M, Chatterji S, Eisen JA. Accounting for alignment uncertainty in phylogenomics. Plos One. 7: e30288. PMID 22272325 DOI: 10.1371/Journal.Pone.0030288 |
0.742 |
|
| 2012 |
Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, Armbrust EV, Eisen JA, Worden AZ. Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges. Environmental Microbiology. 14: 162-76. PMID 21914098 DOI: 10.1111/J.1462-2920.2011.02576.X |
0.466 |
|
| 2011 |
Göker M, Daligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Standards in Genomic Sciences. 5: 407-15. PMID 22675590 DOI: 10.4056/Sigs.2465574 |
0.511 |
|
| 2011 |
Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, ... ... Eisen JA, et al. Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)). Standards in Genomic Sciences. 5: 398-406. PMID 22675589 DOI: 10.4056/Sigs.2344929 |
0.531 |
|
| 2011 |
Fass JN, Joshi NA, Couvillion MT, Bowen J, Gorovsky MA, Hamilton EP, Orias E, Hong K, Coyne RS, Eisen JA, Chalker DL, Lin D, Collins K. Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila. G3 (Bethesda, Md.). 1: 515-22. PMID 22384362 DOI: 10.1534/G3.111.000927 |
0.506 |
|
| 2011 |
Klenk HP, Lapidus A, Chertkov O, Copeland A, Del Rio TG, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Bruce D, Goodwin L, Pitluck S, Pati A, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Standards in Genomic Sciences. 5: 121-34. PMID 22180816 DOI: 10.4056/Sigs.2144922 |
0.482 |
|
| 2011 |
Chang YJ, Land M, Hauser L, Chertkov O, Del Rio TG, Nolan M, Copeland A, Tice H, Cheng JF, Lucas S, Han C, Goodwin L, Pitluck S, Ivanova N, Ovchinikova G, ... ... Eisen JA, et al. Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). Standards in Genomic Sciences. 5: 97-111. PMID 22180814 DOI: 10.4056/Sigs.2114901 |
0.532 |
|
| 2011 |
Lapidus A, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, ... ... Eisen JA, et al. Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10). Standards in Genomic Sciences. 5: 86-96. PMID 22180813 DOI: 10.4056/Sigs.2235024 |
0.536 |
|
| 2011 |
Pati A, Gronow S, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20). Standards in Genomic Sciences. 5: 41-9. PMID 22180809 DOI: 10.4056/Sigs.2164949 |
0.552 |
|
| 2011 |
Liolios K, Sikorski J, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113). Standards in Genomic Sciences. 5: 30-40. PMID 22180808 DOI: 10.4056/Sigs.2154937 |
0.528 |
|
| 2011 |
Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). Standards in Genomic Sciences. 5: 21-9. PMID 22180807 DOI: 10.4056/Sigs.2124912 |
0.523 |
|
| 2011 |
Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. Plos Genetics. 7: e1002272. PMID 21966276 DOI: 10.1371/Journal.Pgen.1002272 |
0.803 |
|
| 2011 |
Kembel SW, Eisen JA, Pollard KS, Green JL. The phylogenetic diversity of metagenomes. Plos One. 6: e23214. PMID 21912589 DOI: 10.1371/Journal.Pone.0023214 |
0.749 |
|
| 2011 |
Göker M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2). Standards in Genomic Sciences. 4: 393-401. PMID 21886866 DOI: 10.4056/Sigs.2064705 |
0.548 |
|
| 2011 |
Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). Standards in Genomic Sciences. 4: 381-92. PMID 21886865 DOI: 10.4056/Sigs.2014648 |
0.548 |
|
| 2011 |
Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Standards in Genomic Sciences. 4: 371-80. PMID 21886864 DOI: 10.4056/Sigs.2004684 |
0.52 |
|
| 2011 |
Han C, Gronow S, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Zeytun A, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Treponema succinifaciens type strain (6091). Standards in Genomic Sciences. 4: 361-70. PMID 21886863 DOI: 10.4056/Sigs.1984594 |
0.53 |
|
| 2011 |
Daligault H, Lapidus A, Zeytun A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Haliscomenobacter hydrossis type strain (O). Standards in Genomic Sciences. 4: 352-60. PMID 21886862 DOI: 10.4056/Sigs.1964579 |
0.541 |
|
| 2011 |
Munk AC, Lapidus A, Lucas S, Nolan M, Tice H, Cheng JF, Del Rio TG, Goodwin L, Pitluck S, Liolios K, Huntemann M, Ivanova N, Mavromatis K, Mikhailova N, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Tsukamurella paurometabola type strain (no. 33). Standards in Genomic Sciences. 4: 342-51. PMID 21886861 DOI: 10.4056/Sigs.1894556 |
0.543 |
|
| 2011 |
Sikorski J, Teshima H, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Ovchinikova G, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Mahella australiensis type strain (50-1 BON). Standards in Genomic Sciences. 4: 331-41. PMID 21886860 DOI: 10.4056/Sigs.1864526 |
0.538 |
|
| 2011 |
Anderson I, Sikorski J, Zeytun A, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). Standards in Genomic Sciences. 4: 322-30. PMID 21886859 DOI: 10.4056/Sigs.1844518 |
0.535 |
|
| 2011 |
Ivanova N, Sikorski J, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). Standards in Genomic Sciences. 4: 312-21. PMID 21886858 DOI: 10.4056/Sigs.1824509 |
0.543 |
|
| 2011 |
Huntemann M, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). Standards in Genomic Sciences. 4: 303-11. PMID 21886857 DOI: 10.4056/Sigs.1814460 |
0.54 |
|
| 2011 |
Darling AE, Tritt A, Eisen JA, Facciotti MT. Mauve assembly metrics. Bioinformatics (Oxford, England). 27: 2756-7. PMID 21810901 DOI: 10.1093/Bioinformatics/Btr451 |
0.796 |
|
| 2011 |
Land M, Held B, Gronow S, Abt B, Lucas S, Del Rio TG, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). Standards in Genomic Sciences. 4: 233-43. PMID 21677860 DOI: 10.4056/Sigs.1784330 |
0.542 |
|
| 2011 |
Pati A, Abt B, Teshima H, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Cellulophaga lytica type strain (LIM-21). Standards in Genomic Sciences. 4: 221-32. PMID 21677859 DOI: 10.4056/Sigs.1774329 |
0.55 |
|
| 2011 |
Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Oceanithermus profundus type strain (506). Standards in Genomic Sciences. 4: 210-20. PMID 21677858 DOI: 10.4056/Sigs.1734292 |
0.531 |
|
| 2011 |
Göker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Ovchinikova G, ... ... Eisen JA, et al. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). Standards in Genomic Sciences. 4: 200-9. PMID 21677857 DOI: 10.4056/Sigs.1714269 |
0.51 |
|
| 2011 |
Gronow S, Held B, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Bacteroides salanitronis type strain (BL78). Standards in Genomic Sciences. 4: 191-9. PMID 21677856 DOI: 10.4056/Sigs.1704212 |
0.525 |
|
| 2011 |
Wirth R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ioanna P, ... ... Eisen JA, et al. Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). Standards in Genomic Sciences. 4: 173-82. PMID 21677854 DOI: 10.4056/Sigs.1644004 |
0.537 |
|
| 2011 |
Pukall R, Zeytun A, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Deinococcus maricopensis type strain (LB-34). Standards in Genomic Sciences. 4: 163-72. PMID 21677853 DOI: 10.4056/Sigs.1633949 |
0.473 |
|
| 2011 |
Pagani I, Chertkov O, Lapidus A, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng JF, Nolan M, Saunders E, Pitluck S, Held B, Goodwin L, Liolios K, Ovchinikova G, ... ... Eisen JA, et al. Complete genome sequence of Marivirga tractuosa type strain (H-43). Standards in Genomic Sciences. 4: 154-62. PMID 21677852 DOI: 10.4056/Sigs.1623941 |
0.54 |
|
| 2011 |
Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Standards in Genomic Sciences. 4: 144-53. PMID 21677851 DOI: 10.4056/sigs.1553862 |
0.442 |
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| 2011 |
Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). Standards in Genomic Sciences. 4: 131-43. PMID 21677850 DOI: 10.4056/Sigs.1463589 |
0.537 |
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| 2011 |
Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC. Drivers of bacterial beta-diversity depend on spatial scale. Proceedings of the National Academy of Sciences of the United States of America. 108: 7850-4. PMID 21518859 DOI: 10.1073/Pnas.1016308108 |
0.315 |
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| 2011 |
Pagani I, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Chertkov O, Davenport K, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Desulfobulbus propionicus type strain (1pr3). Standards in Genomic Sciences. 4: 100-10. PMID 21475592 DOI: 10.4056/Sigs.1613929 |
0.552 |
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| 2011 |
Ivanova N, Rohde C, Munk C, Nolan M, Lucas S, Del Rio TG, Tice H, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Truepera radiovictrix type strain (RQ-24). Standards in Genomic Sciences. 4: 91-9. PMID 21475591 DOI: 10.4056/Sigs.1563919 |
0.54 |
|
| 2011 |
Lang E, Teshima H, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Weeksella virosa type strain (9751). Standards in Genomic Sciences. 4: 81-90. PMID 21475590 DOI: 10.4056/Sigs.1603927 |
0.505 |
|
| 2011 |
Abt B, Lu M, Misra M, Han C, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Cellulophaga algicola type strain (IC166). Standards in Genomic Sciences. 4: 72-80. PMID 21475589 DOI: 10.4056/Sigs.1543845 |
0.534 |
|
| 2011 |
Göker M, Cleland D, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Isosphaera pallida type strain (IS1B). Standards in Genomic Sciences. 4: 63-71. PMID 21475588 DOI: 10.4056/Sigs.1533840 |
0.55 |
|
| 2011 |
Pitluck S, Sikorski J, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1). Standards in Genomic Sciences. 4: 54-62. PMID 21475587 DOI: 10.4056/Sigs.1523807 |
0.557 |
|
| 2011 |
Pati A, Gronow S, Zeytun A, Lapidus A, Nolan M, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Bacteroides helcogenes type strain (P 36-108). Standards in Genomic Sciences. 4: 45-53. PMID 21475586 DOI: 10.4056/Sigs.1513795 |
0.521 |
|
| 2011 |
Gronow S, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Paludibacter propionicigenes type strain (WB4). Standards in Genomic Sciences. 4: 36-44. PMID 21475585 DOI: 10.4056/Sigs.1503846 |
0.534 |
|
| 2011 |
Chertkov O, Sikorski J, Nolan M, Lapidus A, Lucas S, Del Rio TG, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Thermomonospora curvata type strain (B9). Standards in Genomic Sciences. 4: 13-22. PMID 21475583 DOI: 10.4056/Sigs.1453580 |
0.55 |
|
| 2011 |
Abt B, Teshima H, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, Tapia R, ... ... Eisen JA, et al. Complete genome sequence of Leadbetterella byssophila type strain (4M15). Standards in Genomic Sciences. 4: 2-12. PMID 21475582 DOI: 10.4056/Sigs.1413518 |
0.541 |
|
| 2011 |
Wu D, Wu M, Halpern A, Rusch DB, Yooseph S, Frazier M, Venter JC, Eisen JA. Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees. Plos One. 6: e18011. PMID 21437252 DOI: 10.1371/Journal.Pone.0018011 |
0.801 |
|
| 2011 |
Sharpton TJ, Riesenfeld SJ, Kembel SW, Ladau J, O'Dwyer JP, Green JL, Eisen JA, Pollard KS. PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data. Plos Computational Biology. 7: e1001061. PMID 21283775 DOI: 10.1371/Journal.Pcbi.1001061 |
0.806 |
|
| 2011 |
Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR T) Standards in Genomic Sciences. 4: 371-380. DOI: 10.4056/sigs.2004648 |
0.37 |
|
| 2011 |
Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of riemerella anatipestifer type strain (ATCC 11845 T) Standards in Genomic Sciences. 4: 144-153. DOI: 10.4056/Sigs.1553865 |
0.535 |
|
| 2010 |
Brambilla E, Djao OD, Daligault H, Lapidus A, Lucas S, Hammon N, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). Standards in Genomic Sciences. 3: 203-11. PMID 21304750 DOI: 10.4056/Sigs.1183143 |
0.533 |
|
| 2010 |
Sikorski J, Munk C, Lapidus A, Ngatchou Djao OD, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Han C, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). Standards in Genomic Sciences. 3: 194-202. PMID 21304749 DOI: 10.4056/Sigs.1173118 |
0.556 |
|
| 2010 |
Nolan M, Sikorski J, Davenport K, Lucas S, Del Rio TG, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, ... ... Eisen JA, et al. Complete genome sequence of Ferrimonas balearica type strain (PAT). Standards in Genomic Sciences. 3: 174-82. PMID 21304747 DOI: 10.4056/Sigs.1161239 |
0.519 |
|
| 2010 |
Roeselers G, Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, ... Eisen JA, et al. Complete genome sequence of Candidatus Ruthia magnifica. Standards in Genomic Sciences. 3: 163-73. PMID 21304746 DOI: 10.4056/Sigs.1103048 |
0.814 |
|
| 2010 |
Kiss H, Cleland D, Lapidus A, Lucas S, Del Rio TG, Nolan M, Tice H, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, ... ... Eisen JA, et al. Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1). Standards in Genomic Sciences. 3: 153-62. PMID 21304745 DOI: 10.4056/Sigs.1153107 |
0.528 |
|
| 2010 |
Mavromatis K, Yasawong M, Chertkov O, Lapidus A, Lucas S, Nolan M, Del Rio TG, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Tapia R, Han C, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228). Standards in Genomic Sciences. 3: 136-44. PMID 21304743 DOI: 10.4056/Sigs.1143106 |
0.525 |
|
| 2010 |
Yasawong M, Teshima H, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Standards in Genomic Sciences. 3: 126-35. PMID 21304742 DOI: 10.4056/Sigs.1123072 |
0.49 |
|
| 2010 |
Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, Nolan M, Glavina Del Rio T, Cheng JF, Bruce D, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Vulcanisaeta distributa type strain (IC-017). Standards in Genomic Sciences. 3: 117-25. PMID 21304741 DOI: 10.4056/Sigs.1113067 |
0.526 |
|
| 2010 |
Pitluck S, Yasawong M, Munk C, Nolan M, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P). Standards in Genomic Sciences. 3: 108-16. PMID 21304740 DOI: 10.4056/Sigs.1133078 |
0.549 |
|
| 2010 |
Han C, Gu W, Zhang X, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Thermaerobacter marianensis type strain (7p75a). Standards in Genomic Sciences. 3: 337-45. PMID 21304738 DOI: 10.4056/Sigs.1373474 |
0.517 |
|
| 2010 |
Sun H, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509). Standards in Genomic Sciences. 3: 325-36. PMID 21304737 DOI: 10.4056/Sigs.1363462 |
0.555 |
|
| 2010 |
Anderson I, Djao OD, Misra M, Chertkov O, Nolan M, Lucas S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Methanothermus fervidus type strain (V24S). Standards in Genomic Sciences. 3: 315-24. PMID 21304736 DOI: 10.4056/Sigs.1283367 |
0.535 |
|
| 2010 |
Sikorski J, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). Standards in Genomic Sciences. 3: 304-14. PMID 21304735 DOI: 10.4056/Sigs.1273360 |
0.535 |
|
| 2010 |
Del Rio TG, Chertkov O, Yasawong M, Lucas S, Deshpande S, Cheng JF, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Intrasporangium calvum type strain (7 KIP). Standards in Genomic Sciences. 3: 294-303. PMID 21304734 DOI: 10.4056/Sigs.1263355 |
0.526 |
|
| 2010 |
Pitluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Chertkov O, Goodwin L, Tapia R, Han C, Liolios K, ... ... Eisen JA, et al. Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). Standards in Genomic Sciences. 3: 285-93. PMID 21304733 DOI: 10.4056/Sigs.1253298 |
0.514 |
|
| 2010 |
Sun H, Spring S, Lapidus A, Davenport K, Del Rio TG, Tice H, Nolan M, Copeland A, Cheng JF, Lucas S, Tapia R, Goodwin L, Pitluck S, Ivanova N, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Desulfarculus baarsii type strain (2st14). Standards in Genomic Sciences. 3: 276-84. PMID 21304732 DOI: 10.4056/Sigs.1243258 |
0.514 |
|
| 2010 |
Djao OD, Zhang X, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1). Standards in Genomic Sciences. 3: 268-75. PMID 21304731 DOI: 10.4056/Sigs.1233249 |
0.535 |
|
| 2010 |
Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in Genomic Sciences. 3: 243-8. PMID 21304727 DOI: 10.4056/Sigs.1433550 |
0.378 |
|
| 2010 |
Copeland A, Sikorski J, Lapidus A, Nolan M, Glavina T, Del Rio, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, ... ... Eisen JA, et al. Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Standards in Genomic Sciences. 2: 361-2. PMID 21304720 DOI: 10.4056/Sigs.992408 |
0.494 |
|
| 2010 |
von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Goodwin L, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Archaeoglobus profundus type strain (AV18). Standards in Genomic Sciences. 2: 327-46. PMID 21304717 DOI: 10.4056/Sigs.942153 |
0.556 |
|
| 2010 |
Liolios K, Sikorski J, Jando M, Lapidus A, Copeland A, Glavina T, Del Rio, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Woyke T, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Thermobispora bispora type strain (R51). Standards in Genomic Sciences. 2: 318-26. PMID 21304716 DOI: 10.4056/Sigs.962171 |
0.558 |
|
| 2010 |
Pati A, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Chertkov O, Bruce D, Tapia R, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Arcobacter nitrofigilis type strain (CI). Standards in Genomic Sciences. 2: 300-8. PMID 21304714 DOI: 10.4056/Sigs.912121 |
0.526 |
|
| 2010 |
Mavromatis K, Abt B, Brambilla E, Lapidus A, Copeland A, Deshpande S, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Woyke T, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24). Standards in Genomic Sciences. 2: 290-9. PMID 21304713 DOI: 10.4056/Sigs.952166 |
0.557 |
|
| 2010 |
Chertkov O, Sikorski J, Brambilla E, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Tapia R, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Standards in Genomic Sciences. 2: 280-9. PMID 21304712 DOI: 10.4056/Sigs.902116 |
0.555 |
|
| 2010 |
Kiss H, Lang E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Cheng JF, Han C, Goodwin L, Pitluck S, Liolios K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460). Standards in Genomic Sciences. 2: 270-9. PMID 21304711 DOI: 10.4056/Sigs.892105 |
0.541 |
|
| 2010 |
Pati A, Sikorski J, Gronow S, Munk C, Lapidus A, Copeland A, Glavina Del Tio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Brachyspira murdochii type strain (56-150). Standards in Genomic Sciences. 2: 260-9. PMID 21304710 DOI: 10.4056/Sigs.831993 |
0.54 |
|
| 2010 |
Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Thermosphaera aggregans type strain (M11TL). Standards in Genomic Sciences. 2: 245-59. PMID 21304709 DOI: 10.4056/Sigs.821804 |
0.536 |
|
| 2010 |
Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavromatis K, Lucas S, Glavina Del Rio T, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, ... ... Eisen JA, et al. Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Standards in Genomic Sciences. 2: 228-88. PMID 21304706 DOI: 10.4056/Sigs.881234 |
0.417 |
|
| 2010 |
Harmon-Smith M, Celia L, Chertkov O, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300). Standards in Genomic Sciences. 2: 220-7. PMID 21304705 DOI: 10.4056/Sigs.811799 |
0.519 |
|
| 2010 |
Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Ivanova N, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Conexibacter woesei type strain (ID131577). Standards in Genomic Sciences. 2: 212-9. PMID 21304704 DOI: 10.4056/Sigs.751339 |
0.488 |
|
| 2010 |
Sikorski J, Lapidus A, Copeland A, Misra M, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Jando M, Schneider S, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Standards in Genomic Sciences. 2: 203-11. PMID 21304703 DOI: 10.4056/Sigs.791633 |
0.55 |
|
| 2010 |
Wirth R, Sikorski J, Brambilla E, Misra M, Lapidus A, Copeland A, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Tapia R, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Thermocrinis albus type strain (HI 11/12). Standards in Genomic Sciences. 2: 194-202. PMID 21304702 DOI: 10.4056/Sigs.761490 |
0.522 |
|
| 2010 |
Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Labutti K, Pati A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Kribbella flavida type strain (IFO 14399). Standards in Genomic Sciences. 2: 186-93. PMID 21304701 DOI: 10.4056/Sigs.731321 |
0.549 |
|
| 2010 |
Lail K, Sikorski J, Saunders E, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Spirosoma linguale type strain (1). Standards in Genomic Sciences. 2: 176-85. PMID 21304700 DOI: 10.4056/Sigs.741334 |
0.559 |
|
| 2010 |
Tice H, Mayilraj S, Sims D, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Copeland A, Cheng JF, Meincke L, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Nakamurella multipartita type strain (Y-104). Standards in Genomic Sciences. 2: 168-75. PMID 21304699 DOI: 10.4056/Sigs.721316 |
0.533 |
|
| 2010 |
Ivanova N, Sikorski J, Jando M, Munk C, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Geodermatophilus obscurus type strain (G-20). Standards in Genomic Sciences. 2: 158-67. PMID 21304698 DOI: 10.4056/Sigs.711311 |
0.522 |
|
| 2010 |
Sikorski J, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Sulfurospirillum deleyianum type strain (5175). Standards in Genomic Sciences. 2: 149-57. PMID 21304697 DOI: 10.4056/Sigs.671209 |
0.542 |
|
| 2010 |
Labutti K, Mayilraj S, Clum A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Goodwin L, ... ... Eisen JA, et al. Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). Standards in Genomic Sciences. 3: 85-92. PMID 21304695 DOI: 10.4056/Sigs.1092865 |
0.526 |
|
| 2010 |
Göker M, Held B, Lucas S, Nolan M, Yasawong M, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter JC, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Olsenella uli type strain (VPI D76D-27C). Standards in Genomic Sciences. 3: 76-84. PMID 21304694 DOI: 10.4056/Sigs.1082860 |
0.505 |
|
| 2010 |
Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Tapia R, Pitluck S, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1). Standards in Genomic Sciences. 3: 66-75. PMID 21304693 DOI: 10.4056/Sigs.1072907 |
0.537 |
|
| 2010 |
Sikorski J, Lapidus A, Chertkov O, Lucas S, Copeland A, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Han C, Brambilla E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288). Standards in Genomic Sciences. 3: 57-65. PMID 21304692 DOI: 10.4056/Sigs.1062906 |
0.544 |
|
| 2010 |
Labutti K, Sikorski J, Schneider S, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Planctomyces limnophilus type strain (Mü 290). Standards in Genomic Sciences. 3: 47-56. PMID 21304691 DOI: 10.4056/Sigs.1052813 |
0.5 |
|
| 2010 |
Sikorski J, Tindall BJ, Lowry S, Lucas S, Nolan M, Copeland A, Glavina Del Rio T, Tice H, Cheng JF, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Meiothermus silvanus type strain (VI-R2). Standards in Genomic Sciences. 3: 37-46. PMID 21304690 DOI: 10.4056/Sigs.1042812 |
0.529 |
|
| 2010 |
Tindall BJ, Sikorski J, Lucas S, Goltsman E, Copeland A, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Meiothermus ruber type strain (21). Standards in Genomic Sciences. 3: 26-36. PMID 21304689 DOI: 10.4056/Sigs.1032748 |
0.521 |
|
| 2010 |
Abt B, Foster B, Lapidus A, Clum A, Sun H, Pukall R, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Cellulomonas flavigena type strain (134). Standards in Genomic Sciences. 3: 15-25. PMID 21304688 DOI: 10.4056/Sigs.1012662 |
0.556 |
|
| 2010 |
Chang YJ, Pukall R, Saunders E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Acidaminococcus fermentans type strain (VR4). Standards in Genomic Sciences. 3: 1-14. PMID 21304687 DOI: 10.4056/Sigs.1002553 |
0.562 |
|
| 2010 |
Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, Del Rio TG, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Chain P, ... ... Eisen JA, et al. Complete genome sequence of Haloterrigena turkmenica type strain (4k). Standards in Genomic Sciences. 2: 107-16. PMID 21304683 DOI: 10.4056/Sigs.681272 |
0.555 |
|
| 2010 |
Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E, Lapidus A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Haliangium ochraceum type strain (SMP-2). Standards in Genomic Sciences. 2: 96-106. PMID 21304682 DOI: 10.4056/Sigs.69.1277 |
0.557 |
|
| 2010 |
Glavina Del Rio T, Abt B, Spring S, Lapidus A, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Standards in Genomic Sciences. 2: 87-95. PMID 21304681 DOI: 10.4056/Sigs.661199 |
0.547 |
|
| 2010 |
Gronow S, Welnitz S, Lapidus A, Nolan M, Ivanova N, Glavina Del Rio T, Copeland A, Chen F, Tice H, Pitluck S, Cheng JF, Saunders E, Brettin T, Han C, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Veillonella parvula type strain (Te3). Standards in Genomic Sciences. 2: 57-65. PMID 21304678 DOI: 10.4056/Sigs.521107 |
0.55 |
|
| 2010 |
Pati A, Labutti K, Pukall R, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022). Standards in Genomic Sciences. 2: 49-56. PMID 21304677 DOI: 10.4056/Sigs.601105 |
0.553 |
|
| 2010 |
Spring S, Nolan M, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Land M, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)). Standards in Genomic Sciences. 2: 38-48. PMID 21304676 DOI: 10.4056/Sigs.581048 |
0.549 |
|
| 2010 |
Nolan M, Sikorski J, Jando M, Lucas S, Lapidus A, Glavina Del Rio T, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Sims D, Meincke L, Brettin T, Han C, ... ... Eisen JA, et al. Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Standards in Genomic Sciences. 2: 29-37. PMID 21304675 DOI: 10.4056/Sigs.631049 |
0.561 |
|
| 2010 |
Ivanova N, Sikorski J, Jando M, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Gordonia bronchialis type strain (3410). Standards in Genomic Sciences. 2: 19-28. PMID 21304674 DOI: 10.4056/Sigs.611106 |
0.556 |
|
| 2010 |
Mavromatis K, Sikorski J, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA). Standards in Genomic Sciences. 2: 9-18. PMID 21304673 DOI: 10.4056/Sigs.591104 |
0.551 |
|
| 2010 |
Foster B, Pukall R, Abt B, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07). Standards in Genomic Sciences. 2: 1-8. PMID 21304672 DOI: 10.4056/Sigs.571102 |
0.542 |
|
| 2010 |
Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments. Archaea (Vancouver, B.C.). 2010: 690737. PMID 21234345 DOI: 10.1155/2010/690737 |
0.524 |
|
| 2010 |
Hartman AL, Riddle S, McPhillips T, Ludäscher B, Eisen JA. Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences. Bmc Bioinformatics. 11: 317. PMID 20540779 DOI: 10.1186/1471-2105-11-317 |
0.796 |
|
| 2010 |
Morgan JL, Darling AE, Eisen JA. Metagenomic sequencing of an in vitro-simulated microbial community. Plos One. 5: e10209. PMID 20419134 DOI: 10.1371/Journal.Pone.0010209 |
0.654 |
|
| 2010 |
Langille MG, Eisen JA. BioTorrents: a file sharing service for scientific data. Plos One. 5: e10071. PMID 20418944 DOI: 10.1371/Journal.Pone.0010071 |
0.594 |
|
| 2010 |
Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, Robinson J, Khouri H, Ren Q, Lowe TM, Maupin-Furlow J, Pohlschroder M, Daniels C, Pfeiffer F, Allers T, ... Eisen JA, et al. The complete genome sequence of Haloferax volcanii DS2, a model archaeon. Plos One. 5: e9605. PMID 20333302 DOI: 10.1371/Journal.Pone.0009605 |
0.831 |
|
| 2010 |
Ellis CL, Li C, Hartman AL, Knight TH, Overman HA, Mann SK, Ma ZM, Miller CJ, Yotter T, Melcher GP, Siddiqui J, Troia-Cancio PV, Albanese A, Li X, Pollard RB, ... Eisen JA, et al. W1830 CD4+ T-Cell Depletion in Gut-Associated Lymphoid Tissue and CD8+ T-Cell Hyperactivation in Peripheral Blood are Linked to Greater Gut-Proportion of Enterobacteriales and Bacteroidales in HIV Therapy Pre-Clinical Trial Analysis Gastroenterology. 138: S-749. DOI: 10.1016/S0016-5085(10)63450-6 |
0.736 |
|
| 2009 |
Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavrommatis K, Lucas S, Glavina T, Del Rio, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, ... ... Eisen JA, et al. Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Standards in Genomic Sciences. 1: 308-16. PMID 21304671 DOI: 10.4056/Sigs.51657 |
0.564 |
|
| 2009 |
Nolan M, Gronow S, Lapidus A, Ivanova N, Copeland A, Lucas S, Del Rio TG, Chen F, Tice H, Pitluck S, Cheng JF, Sims D, Meincke L, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Streptobacillus moniliformis type strain (9901). Standards in Genomic Sciences. 1: 300-7. PMID 21304670 DOI: 10.4056/Sigs.48727 |
0.553 |
|
| 2009 |
Nolan M, Tindall BJ, Pomrenke H, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Han C, Bruce D, Goodwin L, Chain P, ... ... Eisen JA, et al. Complete genome sequence of Rhodothermus marinus type strain (R-10). Standards in Genomic Sciences. 1: 283-90. PMID 21304669 DOI: 10.4056/Sigs.46736 |
0.525 |
|
| 2009 |
Tindall BJ, Schneider S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). Standards in Genomic Sciences. 1: 270-7. PMID 21304667 DOI: 10.4056/Sigs.42644 |
0.549 |
|
| 2009 |
Pukall R, Gehrich-Schröter G, Lapidus A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Copeland A, Saunders E, Brettin T, Detter JC, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). Standards in Genomic Sciences. 1: 262-9. PMID 21304666 DOI: 10.4056/Sigs.41646 |
0.557 |
|
| 2009 |
Chovatia M, Sikorski J, Schröder M, Lapidus A, Nolan M, Tice H, Glavina Del Rio T, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Standards in Genomic Sciences. 1: 254-61. PMID 21304665 DOI: 10.4056/Sigs.40645 |
0.533 |
|
| 2009 |
Spring S, Lapidus A, Schröder M, Gleim D, Sims D, Meincke L, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Standards in Genomic Sciences. 1: 242-53. PMID 21304664 DOI: 10.4056/Sigs.39508 |
0.551 |
|
| 2009 |
Pukall R, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Kuske C, Brettin T, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Standards in Genomic Sciences. 1: 234-41. PMID 21304663 DOI: 10.4056/Sigs.37633 |
0.552 |
|
| 2009 |
Munk C, Lapidus A, Copeland A, Jando M, Mayilraj S, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Standards in Genomic Sciences. 1: 234-41. PMID 21304662 DOI: 10.4056/Sigs.47643 |
0.547 |
|
| 2009 |
Han C, Sikorski J, Lapidus A, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Kangiella koreensis type strain (SW-125). Standards in Genomic Sciences. 1: 226-33. PMID 21304661 DOI: 10.4056/Sigs.36635 |
0.551 |
|
| 2009 |
Anderson I, Tindall BJ, Pomrenke H, Göker M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Chen F, Tice H, Cheng JF, Lucas S, Chertkov O, Bruce D, Brettin T, ... ... Eisen JA, et al. Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Standards in Genomic Sciences. 1: 218-25. PMID 21304660 DOI: 10.4056/Sigs.31864 |
0.556 |
|
| 2009 |
Saunders E, Pukall R, Abt B, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Standards in Genomic Sciences. 1: 174-82. PMID 21304654 DOI: 10.4056/Sigs.33592 |
0.532 |
|
| 2009 |
Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Standards in Genomic Sciences. 1: 166-73. PMID 21304653 DOI: 10.4056/Sigs.29547 |
0.556 |
|
| 2009 |
Labutti K, Pukall R, Steenblock K, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Anaerococcus prevotii type strain (PC1). Standards in Genomic Sciences. 1: 159-65. PMID 21304652 DOI: 10.4056/Sigs.24194 |
0.554 |
|
| 2009 |
Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Halogeometricum borinquense type strain (PR3). Standards in Genomic Sciences. 1: 150-9. PMID 21304651 DOI: 10.4056/Sigs.23264 |
0.551 |
|
| 2009 |
Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Saccharomonospora viridis type strain (P101). Standards in Genomic Sciences. 1: 141-9. PMID 21304650 DOI: 10.4056/Sigs.20263 |
0.541 |
|
| 2009 |
Lang E, Lapidus A, Chertkov O, Brettin T, Detter JC, Han C, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Land M, Hauser L, ... ... Eisen JA, et al. Complete genome sequence of Dyadobacter fermentans type strain (NS114). Standards in Genomic Sciences. 1: 133-40. PMID 21304649 DOI: 10.4056/Sigs.19262 |
0.555 |
|
| 2009 |
Ivanova N, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Brettin T, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b). Standards in Genomic Sciences. 1: 126-32. PMID 21304648 DOI: 10.4056/Sigs.1854 |
0.559 |
|
| 2009 |
Copeland A, Lapidus A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Mikhailova N, Pati A, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). Standards in Genomic Sciences. 1: 119-25. PMID 21304647 DOI: 10.4056/Sigs.17259 |
0.548 |
|
| 2009 |
Ivanova N, Sikorski J, Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Standards in Genomic Sciences. 1: 110-8. PMID 21304646 DOI: 10.4056/Sigs.16197 |
0.533 |
|
| 2009 |
Mavrommatis K, Gronow S, Saunders E, Land M, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Standards in Genomic Sciences. 1: 101-9. PMID 21304645 DOI: 10.4056/Sigs.15195 |
0.541 |
|
| 2009 |
Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, ... ... Eisen JA, et al. Complete genome sequence of Cryptobacterium curtum type strain (12-3). Standards in Genomic Sciences. 1: 93-100. PMID 21304644 DOI: 10.4056/Sigs.12260 |
0.557 |
|
| 2009 |
Han C, Spring S, Lapidus A, Del Rio TG, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Standards in Genomic Sciences. 1: 54-62. PMID 21304637 DOI: 10.4056/Sigs.22138 |
0.549 |
|
| 2009 |
Land M, Lapidus A, Mayilraj S, Chen F, Copeland A, Del Rio TG, Nolan M, Lucas S, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Pitluck S, Rohde M, ... ... Eisen JA, et al. Complete genome sequence of Actinosynnema mirum type strain (101). Standards in Genomic Sciences. 1: 46-53. PMID 21304636 DOI: 10.4056/Sigs.21137 |
0.564 |
|
| 2009 |
Clum A, Nolan M, Lang E, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP). Standards in Genomic Sciences. 1: 38-45. PMID 21304635 DOI: 10.4056/Sigs.1463 |
0.549 |
|
| 2009 |
Copeland A, Spring S, Göker M, Schneider S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, ... ... Eisen JA, et al. Complete genome sequence of Desulfomicrobium baculatum type strain (X). Standards in Genomic Sciences. 1: 29-37. PMID 21304634 DOI: 10.4056/Sigs.13134 |
0.541 |
|
| 2009 |
Land M, Pukall R, Abt B, Göker M, Rohde M, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Standards in Genomic Sciences. 1: 21-8. PMID 21304633 DOI: 10.4056/Sigs.1162 |
0.54 |
|
| 2009 |
Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Kytococcus sedentarius type strain (541). Standards in Genomic Sciences. 1: 12-20. PMID 21304632 DOI: 10.4056/Sigs.761 |
0.554 |
|
| 2009 |
Lapidus A, Pukall R, Labuttii K, Copeland A, Del Rio TG, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Rohde M, Göker M, ... ... Eisen JA, et al. Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Standards in Genomic Sciences. 1: 3-11. PMID 21304631 DOI: 10.4056/Sigs.492 |
0.554 |
|
| 2009 |
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, ... ... Eisen JA, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 462: 1056-60. PMID 20033048 DOI: 10.1038/Nature08656 |
0.839 |
|
| 2009 |
Eisen JA, MacCallum CJ. Genomics of emerging infectious disease: A PLoS collection. Plos Biology. 7: e1000224. PMID 19855830 DOI: 10.1371/Journal.Pbio.1000224 |
0.471 |
|
| 2009 |
Hartman AL, Lough DM, Barupal DK, Fiehn O, Fishbein T, Zasloff M, Eisen JA. Human gut microbiome adopts an alternative state following small bowel transplantation. Proceedings of the National Academy of Sciences of the United States of America. 106: 17187-92. PMID 19805153 DOI: 10.1073/Pnas.0904847106 |
0.751 |
|
| 2009 |
Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, ... ... Eisen JA, et al. The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). Plos One. 4: e6085. PMID 19568419 DOI: 10.1371/Journal.Pone.0006085 |
0.72 |
|
| 2009 |
Woyke T, Xie G, Copeland A, González JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R. Assembling the marine metagenome, one cell at a time. Plos One. 4: e5299. PMID 19390573 DOI: 10.1371/Journal.Pone.0005299 |
0.721 |
|
| 2009 |
Campbell BJ, Smith JL, Hanson TE, Klotz MG, Stein LY, Lee CK, Wu D, Robinson JM, Khouri HM, Eisen JA, Cary SC. Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. Plos Genetics. 5: e1000362. PMID 19197347 DOI: 10.1371/Journal.Pgen.1000362 |
0.712 |
|
| 2009 |
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. Plos One. 4: e4207. PMID 19148287 DOI: 10.1371/Journal.Pone.0004207 |
0.853 |
|
| 2008 |
Valdés J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R, Eisen JA, Holmes DS. Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications. Bmc Genomics. 9: 597. PMID 19077236 DOI: 10.1186/1471-2164-9-597 |
0.396 |
|
| 2008 |
Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, ... ... Eisen JA, et al. Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure. Bmc Genomics. 9: 562. PMID 19036158 DOI: 10.1186/1471-2164-9-562 |
0.539 |
|
| 2008 |
Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, ... ... Eisen JA, et al. A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biology. 9: R158. PMID 19000309 DOI: 10.1186/Gb-2008-9-11-R158 |
0.427 |
|
| 2008 |
Wu M, Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biology. 9: R151. PMID 18851752 DOI: 10.1186/Gb-2008-9-10-R151 |
0.697 |
|
| 2008 |
Wu D, Hartman A, Ward N, Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). Plos One. 3: e2566. PMID 18596968 DOI: 10.1371/Journal.Pone.0002566 |
0.827 |
|
| 2008 |
Wu D, Hartman A, Ward N, Eisen JA. Correction: An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) Plos One. 3. DOI: 10.1371/Annotation/C1Aa88Dd-4360-4902-8599-4D7Edca79817 |
0.74 |
|
| 2008 |
Chatterji S, Yamazaki I, Bai Z, Eisen JA. CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 17-28. DOI: 10.1007/978-3-540-78839-3_3 |
0.603 |
|
| 2007 |
Hazen TH, Wu D, Eisen JA, Sobecky PA. Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp. Applied and Environmental Microbiology. 73: 7703-10. PMID 17921277 DOI: 10.1128/Aem.01577-07 |
0.696 |
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| 2007 |
Pfarr K, Foster J, Slatko B, Hoerauf A, Eisen JA. On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this species name include the intracellular bacteria of filarial nematodes? International Journal of Systematic and Evolutionary Microbiology. 57: 1677-8. PMID 17684235 DOI: 10.1099/Ijs.0.65248-0 |
0.321 |
|
| 2007 |
Maresca JA, Graham JE, Wu M, Eisen JA, Bryant DA. Identification of a fourth family of lycopene cyclases in photosynthetic bacteria. Proceedings of the National Academy of Sciences of the United States of America. 104: 11784-9. PMID 17606904 DOI: 10.1073/Pnas.0702984104 |
0.702 |
|
| 2007 |
Norais C, Hawkins M, Hartman AL, Eisen JA, Myllykallio H, Allers T. Genetic and physical mapping of DNA replication origins in Haloferax volcanii. Plos Genetics. 3: e77. PMID 17511521 DOI: 10.1371/Journal.Pgen.0030077 |
0.769 |
|
| 2007 |
Eisen JA. Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes. Plos Biology. 5: e82. PMID 17355177 DOI: 10.1371/Journal.Pbio.0050082 |
0.426 |
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| 2007 |
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. Plos Biology. 5: e77. PMID 17355176 DOI: 10.1371/Journal.Pbio.0050077 |
0.766 |
|
| 2007 |
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Plos Biology. 5: e16. PMID 17355171 DOI: 10.1371/Journal.Pbio.0050016 |
0.397 |
|
| 2007 |
Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, et al. The Calyptogena magnifica chemoautotrophic symbiont genome. Science (New York, N.Y.). 315: 998-1000. PMID 17303757 DOI: 10.1126/Science.1138438 |
0.676 |
|
| 2006 |
Goldman BS, Nierman WC, Kaiser D, Slater SC, Durkin AS, Eisen JA, Eisen J, Ronning CM, Barbazuk WB, Blanchard M, Field C, Halling C, Hinkle G, Iartchuk O, Kim HS, et al. Evolution of sensory complexity recorded in a myxobacterial genome. Proceedings of the National Academy of Sciences of the United States of America. 103: 15200-5. PMID 17015832 DOI: 10.1073/Pnas.0607335103 |
0.396 |
|
| 2006 |
Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Plos Biology. 4: e286. PMID 16933976 DOI: 10.1371/Journal.Pbio.0040286 |
0.841 |
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| 2006 |
Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231 |
0.494 |
|
| 2006 |
Hamilton EP, Dear PH, Rowland T, Saks K, Eisen JA, Orias E. Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome. Genomics. 88: 443-51. PMID 16782302 DOI: 10.1016/J.Ygeno.2006.05.002 |
0.461 |
|
| 2006 |
Wu D, Daugherty SC, Van Aken SE, Pai GH, Watkins KL, Khouri H, Tallon LJ, Zaborsky JM, Dunbar HE, Tran PL, Moran NA, Eisen JA. Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters. Plos Biology. 4: e188. PMID 16729848 DOI: 10.1371/Journal.Pbio.0040188 |
0.755 |
|
| 2006 |
Dunning Hotopp JC, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Eisen J, Seshadri R, Ren Q, Wu M, Utterback TR, Smith S, Lewis M, Khouri H, Zhang C, et al. Comparative genomics of emerging human ehrlichiosis agents. Plos Genetics. 2: e21. PMID 16482227 DOI: 10.1371/Journal.Pgen.0020021 |
0.698 |
|
| 2006 |
Penn K, Wu D, Eisen JA, Ward N. Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Applied and Environmental Microbiology. 72: 1680-3. PMID 16461727 DOI: 10.1128/Aem.72.2.1680-1683.2006 |
0.665 |
|
| 2006 |
Dunning Hotopp JC, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Seshadri R, Ren Q, Wu M, Utterback TR, Smith S, Lewis M, Khouri H, Zhang C, Niu H, et al. Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents Plos Genetics. 2: e213. DOI: 10.1371/Journal.Pgen.0020213 |
0.609 |
|
| 2006 |
Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, ... ... Eisen JA, et al. Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901 Plos Genetics. 2: e60. DOI: 10.1371/Journal.Pgen.0020060 |
0.695 |
|
| 2006 |
Goldman BS, Nierman WC, Kaiser D, Slater SC, Durkin AS, Eisen JA, Ronning CM, Barbazuk WB, Blanchard M, Field C, Halling C, Hinkle G, Iartchuk O, Kim HS, Mackenzie C, et al. Erratum: Evolution of sensory complexity recorded in a myxobacterial genome (Proceedings of the National Academy of Sciences of the United States of America (October 10, 2006) 103, 41 (15200-15205) DOI: 10.1073/pnas.0607335103) Proceedings of the National Academy of Sciences of the United States of America. 103. DOI: 10.1073/Pnas.0609567103 |
0.346 |
|
| 2005 |
Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, ... ... Eisen JA, et al. Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. Plos Genetics. 1: e65. PMID 16311624 DOI: 10.1371/Journal.Pgen.0010065 |
0.701 |
|
| 2005 |
Schmidt EW, Nelson JT, Rasko DA, Sudek S, Eisen JA, Haygood MG, Ravel J. Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella. Proceedings of the National Academy of Sciences of the United States of America. 102: 7315-20. PMID 15883371 DOI: 10.1073/Pnas.0501424102 |
0.357 |
|
| 2005 |
Badger JH, Eisen JA, Ward NL. Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales. International Journal of Systematic and Evolutionary Microbiology. 55: 1021-6. PMID 15879228 DOI: 10.1099/Ijs.0.63510-0 |
0.717 |
|
| 2005 |
Desjardins C, Eisen JA, Nene V. New evolutionary frontiers from unusual virus genomes. Genome Biology. 6: 212. PMID 15774035 DOI: 10.1186/Gb-2005-6-3-212 |
0.475 |
|
| 2005 |
Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, et al. Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science (New York, N.Y.). 307: 105-8. PMID 15637277 DOI: 10.1126/Science.1102226 |
0.457 |
|
| 2004 |
Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, ... Eisen JA, et al. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature. 432: 910-3. PMID 15602564 DOI: 10.1038/Nature03170 |
0.505 |
|
| 2004 |
Ward N, Larsen Ø, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D, Kang KH, Lewis M, Nelson KE, Methé B, Wu M, Heidelberg JF, ... ... Eisen JA, et al. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). Plos Biology. 2: e303. PMID 15383840 DOI: 10.1371/Journal.Pbio.0020303 |
0.833 |
|
| 2004 |
Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, et al. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature Biotechnology. 22: 554-9. PMID 15077118 DOI: 10.1038/Nbt959 |
0.457 |
|
| 2004 |
Seshadri R, Myers GS, Tettelin H, Eisen JA, Heidelberg JF, Dodson RJ, Davidsen TM, DeBoy RT, Fouts DE, Haft DH, Selengut J, Ren Q, Brinkac LM, Madupu R, Kolonay J, et al. Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 5646-51. PMID 15064399 DOI: 10.1073/Pnas.0307639101 |
0.531 |
|
| 2004 |
Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, Brownlie JC, McGraw EA, Martin W, Esser C, Ahmadinejad N, Wiegand C, Madupu R, Beanan MJ, Brinkac LM, Daugherty SC, ... ... Eisen JA, et al. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. Plos Biology. 2: E69. PMID 15024419 DOI: 10.1371/Journal.Pbio.0020069 |
0.736 |
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| 2004 |
Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, Andersson B, Bontempi E, Eisen J, Angiuoli S, Wanless D, Von Arx A, Murphy L, Lennard N, Salzberg S, et al. Gene synteny and evolution of genome architecture in trypanosomatids. Molecular and Biochemical Parasitology. 134: 183-91. PMID 15003838 DOI: 10.1016/J.Molbiopara.2003.11.012 |
0.513 |
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| 2004 |
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science (New York, N.Y.). 304: 66-74. PMID 15001713 DOI: 10.1126/Science.1093857 |
0.765 |
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| 2003 |
Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, et al. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science (New York, N.Y.). 302: 1967-9. PMID 14671304 DOI: 10.1126/Science.1088727 |
0.644 |
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| 2003 |
Nelson KE, Fleischmann RD, DeBoy RT, Paulsen IT, Fouts DE, Eisen JA, Daugherty SC, Dodson RJ, Durkin AS, Gwinn M, Haft DH, Kolonay JF, Nelson WC, Mason T, Tallon L, et al. Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83. Journal of Bacteriology. 185: 5591-601. PMID 12949112 DOI: 10.1128/Jb.185.18.5591-5601.2003 |
0.542 |
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| 2003 |
Miller ES, Heidelberg JF, Eisen JA, Nelson WC, Durkin AS, Ciecko A, Feldblyum TV, White O, Paulsen IT, Nierman WC, Lee J, Szczypinski B, Fraser CM. Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage. Journal of Bacteriology. 185: 5220-33. PMID 12923095 DOI: 10.1128/Jb.185.17.5220-5233.2003 |
0.481 |
|
| 2003 |
Eisen JA, Fraser CM. Phylogenomics: intersection of evolution and genomics. Science (New York, N.Y.). 300: 1706-7. PMID 12805538 DOI: 10.1126/Science.1086292 |
0.452 |
|
| 2003 |
Ermolaeva MD, Wu M, Eisen JA, Salzberg SL. The age of the Arabidopsis thaliana genome duplication. Plant Molecular Biology. 51: 859-66. PMID 12777046 DOI: 10.1023/A:1023001130337 |
0.689 |
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| 2003 |
Alland D, Whittam TS, Murray MB, Cave MD, Hazbon MH, Dix K, Kokoris M, Duesterhoeft A, Eisen JA, Fraser CM, Fleischmann RD. Modeling bacterial evolution with comparative-genome-based marker systems: application to Mycobacterium tuberculosis evolution and pathogenesis. Journal of Bacteriology. 185: 3392-9. PMID 12754238 DOI: 10.1128/Jb.185.11.3392-3399.2003 |
0.46 |
|
| 2003 |
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H, Fouts DE, Eisen JA, Gill SR, Holtzapple EK, Okstad OA, Helgason E, Rilstone J, Wu M, et al. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423: 81-6. PMID 12721629 DOI: 10.1038/Nature01586 |
0.687 |
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| 2003 |
Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM, Beanan MJ, Deboy RT, Daugherty SC, Brinkac LM, Madupu R, Dodson RJ, et al. Complete genome sequence of the Q-fever pathogen Coxiella burnetii. Proceedings of the National Academy of Sciences of the United States of America. 100: 5455-60. PMID 12704232 DOI: 10.1073/Pnas.0931379100 |
0.538 |
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| 2003 |
Paulsen IT, Banerjei L, Myers GS, Nelson KE, Seshadri R, Read TD, Fouts DE, Eisen JA, Gill SR, Heidelberg JF, Tettelin H, Dodson RJ, Umayam L, Brinkac L, Beanan M, et al. Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science (New York, N.Y.). 299: 2071-4. PMID 12663927 DOI: 10.1126/Science.1080613 |
0.36 |
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| 2003 |
Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VAP, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, ... ... Eisen JA, et al. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 Environmental Microbiology. 5: 630-630. DOI: 10.1046/J.1462-2920.2003.00480.X |
0.501 |
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| 2002 |
Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, ... ... Eisen JA, et al. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environmental Microbiology. 4: 799-808. PMID 12534463 DOI: 10.1046/J.1462-2920.2002.00366.X |
0.519 |
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| 2002 |
Fraser CM, Eisen JA, Nelson KE, Paulsen IT, Salzberg SL. The value of complete microbial genome sequencing (you get what you pay for). Journal of Bacteriology. 184: 6403-5; discusion 64. PMID 12426324 DOI: 10.1128/Jb.184.23.6403-6405.2002 |
0.512 |
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| 2002 |
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419: 498-511. PMID 12368864 DOI: 10.1038/Nature01097 |
0.493 |
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| 2002 |
Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methe B, Clayton RA, Meyer T, Tsapin A, Scott J, Beanan M, et al. Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nature Biotechnology. 20: 1118-23. PMID 12368813 DOI: 10.1038/Nbt749 |
0.469 |
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| 2002 |
Paulsen IT, Seshadri R, Nelson KE, Eisen JA, Heidelberg JF, Read TD, Dodson RJ, Umayam L, Brinkac LM, Beanan MJ, Daugherty SC, Deboy RT, Durkin AS, Kolonay JF, Madupu R, et al. The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts. Proceedings of the National Academy of Sciences of the United States of America. 99: 13148-53. PMID 12271122 DOI: 10.1073/Pnas.192319099 |
0.468 |
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| 2002 |
Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, Peterson J, DeBoy R, Dodson R, Gwinn M, Haft D, Hickey E, Kolonay JF, Nelson WC, Umayam LA, Ermolaeva M, et al. Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. Journal of Bacteriology. 184: 5479-90. PMID 12218036 DOI: 10.1128/Jb.184.19.5479-5490.2002 |
0.425 |
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| 2002 |
Tettelin H, Masignani V, Cieslewicz MJ, Eisen JA, Peterson S, Wessels MR, Paulsen IT, Nelson KE, Margarit I, Read TD, Madoff LC, Wolf AM, Beanan MJ, Brinkac LM, Daugherty SC, et al. Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. Proceedings of the National Academy of Sciences of the United States of America. 99: 12391-6. PMID 12200547 DOI: 10.1073/Pnas.182380799 |
0.533 |
|
| 2002 |
Eisen JA, Wu M. Phylogenetic analysis and gene functional predictions: phylogenomics in action. Theoretical Population Biology. 61: 481-7. PMID 12167367 DOI: 10.1006/Tpbi.2002.1594 |
0.659 |
|
| 2002 |
Eisen JA, Nelson KE, Paulsen IT, Heidelberg JF, Wu M, Dodson RJ, Deboy R, Gwinn ML, Nelson WC, Haft DH, Hickey EK, Peterson JD, Durkin AS, Kolonay JL, Yang F, et al. The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proceedings of the National Academy of Sciences of the United States of America. 99: 9509-14. PMID 12093901 DOI: 10.1073/Pnas.132181499 |
0.74 |
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| 2002 |
Van Houten B, Eisen JA, Hanawalt PC. A cut above: discovery of an alternative excision repair pathway in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 99: 2581-3. PMID 11880612 DOI: 10.1073/Pnas.062062599 |
0.485 |
|
| 2002 |
Eisen JA. Brouhaha over the other yeast. Nature. 415: 845-8. PMID 11859347 DOI: 10.1038/Nature725 |
0.51 |
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| 2002 |
Béjà O, Suzuki MT, Heidelberg JF, Nelson WC, Preston CM, Hamada T, Eisen JA, Fraser CM, DeLong EF. Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature. 415: 630-3. PMID 11832943 DOI: 10.1038/415630A |
0.42 |
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| 2002 |
Ware J, Moran L, Foster J, Posfai J, Vincze T, Guiliano D, Blaxter M, Eisen J, Slatko B. Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi. International Journal For Parasitology. 32: 159-66. PMID 11812492 DOI: 10.1016/S0020-7519(01)00367-8 |
0.529 |
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| 2001 |
Dassarma S, Kennedy SP, Berquist B, Victor Ng W, Baliga NS, Spudich JL, Krebs MP, Eisen JA, Johnson CH, Hood L. Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon. Photosynthesis Research. 70: 3-17. PMID 16228359 DOI: 10.1023/A:1013879706863 |
0.425 |
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| 2001 |
Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE, Almeida NF, Woo L, Chen Y, Paulsen IT, Eisen JA, Karp PD, et al. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science (New York, N.Y.). 294: 2317-23. PMID 11743193 DOI: 10.1126/Science.1066804 |
0.489 |
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| 2001 |
Ward N, Eisen J, Fraser C, Stackebrandt E. Sequenced strains must be saved from extinction. Nature. 414: 148. PMID 11700527 DOI: 10.1038/35102737 |
0.389 |
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| 2001 |
Tettelin H, Nelson KE, Paulsen IT, Eisen JA, Read TD, Peterson S, Heidelberg J, DeBoy RT, Haft DH, Dodson RJ, Durkin AS, Gwinn M, Kolonay JF, Nelson WC, Peterson JD, et al. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science (New York, N.Y.). 293: 498-506. PMID 11463916 DOI: 10.1126/Science.1061217 |
0.526 |
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| 2001 |
Salzberg SL, White O, Peterson J, Eisen JA. Microbial genes in the human genome: lateral transfer or gene loss? Science (New York, N.Y.). 292: 1903-6. PMID 11358996 DOI: 10.1126/Science.1061036 |
0.46 |
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| 2001 |
Nierman WC, Feldblyum TV, Laub MT, Paulsen IT, Nelson KE, Eisen JA, Heidelberg JF, Alley MR, Ohta N, Maddock JR, Potocka I, Nelson WC, Newton A, Stephens C, Phadke ND, ... ... Eisen J, et al. Complete genome sequence of Caulobacter crescentus. Proceedings of the National Academy of Sciences of the United States of America. 98: 4136-41. PMID 11259647 DOI: 10.1073/Pnas.061029298 |
0.528 |
|
| 2001 |
Bevan M, Mayer K, White O, Eisen JA, Preuss D, Bureau T, Salzberg SL, Mewes HW. Sequence and analysis of the Arabidopsis genome. Current Opinion in Plant Biology. 4: 105-10. PMID 11228431 DOI: 10.1016/S1369-5266(00)00144-8 |
0.524 |
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| 2001 |
Nelson KE, Eisen JA, Fraser CM. Genome of Thermotoga maritima MSB8 Methods in Enzymology. 330: 169-182. PMID 11210497 DOI: 10.1016/S0076-6879(01)30374-9 |
0.345 |
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| 2001 |
Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, Paulsen IT, White O. TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Research. 29: 41-3. PMID 11125044 DOI: 10.1093/Nar/29.1.41 |
0.35 |
|
| 2001 |
Eisen JA. Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Current Opinion in Genetics & Development. 10: 606-11. PMID 11088009 DOI: 10.1016/S0959-437X(00)00143-X |
0.471 |
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| 2000 |
Eisen JA, Heidelberg JF, White O, Salzberg SL. Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biology. 1: RESEARCH0011. PMID 11178265 DOI: 10.1186/Gb-2000-1-6-Research0011 |
0.515 |
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| 2000 |
Pollock DD, Eisen JA, Doggett NA, Cummings MP. A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. Molecular Biology and Evolution. 17: 1776-88. PMID 11110893 DOI: 10.1093/Oxfordjournals.Molbev.A026278 |
0.54 |
|
| 2000 |
Eisen JA. Assessing evolutionary relationships among microbes from whole-genome analysis. Current Opinion in Microbiology. 3: 475-80. PMID 11050445 DOI: 10.1016/S1369-5274(00)00125-9 |
0.527 |
|
| 2000 |
Fraser CM, Eisen J, Fleischmann RD, Ketchum KA, Peterson S. Comparative genomics and understanding of microbial biology Emerging Infectious Diseases. 6: 505-512. PMID 10998382 DOI: 10.3201/Eid0605.000510 |
0.549 |
|
| 2000 |
Fraser CM, Eisen JA, Salzberg SL. Microbial genome sequencing. Nature. 406: 799-803. PMID 10963611 DOI: 10.1038/35021244 |
0.516 |
|
| 2000 |
Heidelberg JF, Eisen JA, Nelson WC, Clayton RA, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Umayam L, Gill SR, Nelson KE, Read TD, Tettelin H, Richardson D, et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature. 406: 477-83. PMID 10952301 DOI: 10.1038/35020000 |
0.451 |
|
| 2000 |
Nierman W, Eisen JA, Fraser CM. Microbial genome sequencing 2000: New insights into physiology, evolution and expression analysis Research in Microbiology. 151: 79-84. PMID 10865951 DOI: 10.1016/S0923-2508(00)00125-X |
0.525 |
|
| 2000 |
Coleman MA, Eisen JA, Mohrenweiser HW. Cloning and characterization of HARP/SMARCAL1: a prokaryotic HepA-related SNF2 helicase protein from human and mouse. Genomics. 65: 274-82. PMID 10857751 DOI: 10.1006/Geno.2000.6174 |
0.329 |
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| 2000 |
Nierman WC, Eisen JA, Fleischmann RD, Fraser CM. Genome data: What do we learn? Current Opinion in Structural Biology. 10: 343-348. PMID 10851186 DOI: 10.1016/S0959-440X(00)00094-4 |
0.497 |
|
| 2000 |
Tettelin H, Saunders NJ, Heidelberg J, Jeffries AC, Nelson KE, Eisen JA, Ketchum KA, Hood DW, Peden JF, Dodson RJ, Nelson WC, Gwinn ML, DeBoy R, Peterson JD, Hickey EK, et al. Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science (New York, N.Y.). 287: 1809-15. PMID 10710307 DOI: 10.1126/Science.287.5459.1809 |
0.479 |
|
| 2000 |
Read TD, Brunham RC, Shen C, Gill SR, Heidelberg JF, White O, Hickey EK, Peterson J, Utterback T, Berry K, Bass S, Linher K, Weidman J, Khouri H, Craven B, ... ... Eisen J, et al. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Research. 28: 1397-406. PMID 10684935 DOI: 10.1093/Nar/28.6.1397 |
0.492 |
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| 1999 |
Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL, Barnstead M, Feldblyum TV, Buell CR, Ketchum KA, Lee J, Ronning CM, ... ... Eisen JA, et al. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Nature. 402: 761-8. PMID 10617197 DOI: 10.1038/45471 |
0.437 |
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| 1999 |
Eisen JA, Hanawalt PC. A phylogenomic study of DNA repair genes, proteins, and processes. Mutation Research. 435: 171-213. PMID 10606811 DOI: 10.1016/S0921-8777(99)00050-6 |
0.608 |
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| 1999 |
White O, Eisen JA, Heidelberg JF, Hickey EK, Peterson JD, Dodson RJ, Haft DH, Gwinn ML, Nelson WC, Richardson DL, Moffat KS, Qin H, Jiang L, Pamphile W, Crosby M, et al. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science (New York, N.Y.). 286: 1571-7. PMID 10567266 DOI: 10.1126/Science.286.5444.1571 |
0.414 |
|
| 1999 |
Nelson KE, Clayton RA, Gill SR, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Nelson WC, Ketchum KA, McDonald L, Utterback TR, Malek JA, Linher KD, Garrett MM, ... ... Eisen JA, et al. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature. 399: 323-9. PMID 10360571 DOI: 10.1038/20601 |
0.471 |
|
| 1998 |
Wei MH, Karavanova I, Ivanov SV, Popescu NC, Keck CL, Pack S, Eisen JA, Lerman MI. In silico-initiated cloning and molecular characterization of a novel human member of the L1 gene family of neural cell adhesion molecules. Human Genetics. 103: 355-64. PMID 9799093 DOI: 10.1007/S004390050829 |
0.302 |
|
| 1998 |
Eisen JA. A phylogenomic study of the MutS family of proteins. Nucleic Acids Research. 26: 4291-300. PMID 9722651 DOI: 10.1093/Nar/26.18.4291 |
0.391 |
|
| 1998 |
Gruber TM, Eisen JA, Gish K, Bryant DA. The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences. Fems Microbiology Letters. 162: 53-60. PMID 9595663 DOI: 10.1111/J.1574-6968.1998.Tb12978.X |
0.432 |
|
| 1998 |
Eisen JA. Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Research. 8: 163-7. PMID 9521918 DOI: 10.1101/Gr.8.3.163 |
0.395 |
|
| 1997 |
Eisen JA, Kaiser D, Myers RM. Gastrogenomic delights: a movable feast. Nature Medicine. 3: 1076-8. PMID 9334711 DOI: 10.1038/Nm1097-1076 |
0.507 |
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| 1997 |
Shafer RW, Eisen JA, Merigan TC, Katzenstein DA. Sequence and drug susceptibility of subtype C reverse transcriptase from human immunodeficiency virus type 1 seroconverters in Zimbabwe. Journal of Virology. 71: 5441-8. PMID 9188616 DOI: 10.1128/Jvi.71.7.5441-5448.1997 |
0.388 |
|
| 1996 |
Eisen JA. The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. Journal of Molecular Evolution. 41: 1105-23. PMID 8587109 DOI: 10.1007/Bf00173192 |
0.36 |
|
| 1995 |
Eisen JA, Sweder KS, Hanawalt PC. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Research. 23: 2715-23. PMID 7651832 DOI: 10.1093/Nar/23.14.2715 |
0.505 |
|
| 1994 |
Eisen JA, Benito Mi, Walbot V. Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences Nucleic Acids Research. 22: 2634-2636. PMID 8041625 DOI: 10.1093/Nar/22.13.2634 |
0.339 |
|
| 1993 |
Liu SK, Eisen JA, Hanawalt PC, Tessman I. recA mutations that reduce the constitutive coprotease activity of the RecA1202(Prtc) protein: possible involvement of interfilament association in proteolytic and recombination activities. Journal of Bacteriology. 175: 6518-29. PMID 8407828 DOI: 10.1128/Jb.175.20.6518-6529.1993 |
0.479 |
|
| 1992 |
Eisen JA, Smith SW, Cavanaugh CM. Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum say (Mollusca: Bivalvia) determined by 16S rRNA gene sequence analysis. Journal of Bacteriology. 174: 3416-21. PMID 1577710 DOI: 10.1128/Jb.174.10.3416-3421.1992 |
0.677 |
|
| Show low-probability matches. |
