| Year |
Citation |
Score |
| 2023 |
Vila JCC, Goldford J, Estrela S, Bajic D, Sanchez-Gorostiaga A, Damian-Serrano A, Lu N, Marsland R, Rebolleda-Gomez M, Mehta P, Sanchez A. Metabolic similarity and the predictability of microbial community assembly. Biorxiv : the Preprint Server For Biology. PMID 37961608 DOI: 10.1101/2023.10.25.564019 |
0.809 |
|
| 2023 |
Skwara A, Gowda K, Yousef M, Diaz-Colunga J, Raman AS, Sanchez A, Tikhonov M, Kuehn S. Statistically learning the functional landscape of microbial communities. Nature Ecology & Evolution. 7: 1823-1833. PMID 37783827 DOI: 10.1038/s41559-023-02197-4 |
0.491 |
|
| 2023 |
Takano S, Vila JCC, Miyazaki R, Sánchez Á, Bajić D. The Architecture of Metabolic Networks Constrains the Evolution of Microbial Resource Hierarchies. Molecular Biology and Evolution. 40. PMID 37619982 DOI: 10.1093/molbev/msad187 |
0.749 |
|
| 2023 |
Ruiz J, de Celis M, Diaz-Colunga J, Vila JC, Benitez-Dominguez B, Vicente J, Santos A, Sanchez A, Belda I. Predictability of the community-function landscape in wine yeast ecosystems. Molecular Systems Biology. e11613. PMID 37548146 DOI: 10.15252/msb.202311613 |
0.824 |
|
| 2023 |
Chang CY, Bajić D, Vila JCC, Estrela S, Sanchez A. Emergent coexistence in multispecies microbial communities. Science (New York, N.Y.). 381: 343-348. PMID 37471535 DOI: 10.1126/science.adg0727 |
0.822 |
|
| 2023 |
Sun X, Sanchez A. Synthesizing microbial biodiversity. Current Opinion in Microbiology. 75: 102348. PMID 37352679 DOI: 10.1016/j.mib.2023.102348 |
0.407 |
|
| 2023 |
Diaz-Colunga J, Skwara A, Gowda K, Diaz-Uriarte R, Tikhonov M, Bajic D, Sanchez A. Global epistasis on fitness landscapes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220053. PMID 37004717 DOI: 10.1098/rstb.2022.0053 |
0.721 |
|
| 2023 |
Sanchez A, Bajic D, Diaz-Colunga J, Skwara A, Vila JCC, Kuehn S. The community-function landscape of microbial consortia. Cell Systems. 14: 122-134. PMID 36796331 DOI: 10.1016/j.cels.2022.12.011 |
0.815 |
|
| 2023 |
Aranda-Díaz A, Willis L, Nguyen TH, Ho PY, Vila J, Thomsen T, Chavez T, Yan R, Yu FB, Neff N, Sanchez A, Estrela S, Huang KC. Assembly of gut-derived bacterial communities follows "early-bird" resource utilization dynamics. Biorxiv : the Preprint Server For Biology. PMID 36711771 DOI: 10.1101/2023.01.13.523996 |
0.813 |
|
| 2022 |
Diaz-Colunga J, Lu N, Sanchez-Gorostiaga A, Chang CY, Cai HS, Goldford JE, Tikhonov M, Sánchez Á. Top-down and bottom-up cohesiveness in microbial community coalescence. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35105804 DOI: 10.1073/pnas.2111261119 |
0.838 |
|
| 2021 |
Weiss AS, Burrichter AG, Durai Raj AC, von Strempel A, Meng C, Kleigrewe K, Münch PC, Rössler L, Huber C, Eisenreich W, Jochum LM, Göing S, Jung K, Lincetto C, Hübner J, ... ... Sanchez A, et al. In vitro interaction network of a synthetic gut bacterial community. The Isme Journal. PMID 34857933 DOI: 10.1038/s41396-021-01153-z |
0.458 |
|
| 2021 |
Dutton CL, Subalusky AL, Sanchez A, Estrela S, Lu N, Hamilton SK, Njoroge L, Rosi EJ, Post DM. The meta-gut: community coalescence of animal gut and environmental microbiomes. Scientific Reports. 11: 23117. PMID 34848778 DOI: 10.1038/s41598-021-02349-1 |
0.811 |
|
| 2021 |
Bajić D, Rebolleda-Gómez M, Muñoz MM, Sánchez Á. The Macroevolutionary Consequences of Niche Construction in Microbial Metabolism. Frontiers in Microbiology. 12: 718082. PMID 34671327 DOI: 10.3389/fmicb.2021.718082 |
0.749 |
|
| 2021 |
Estrela S, Vila JCC, Lu N, Bajić D, Rebolleda-Gómez M, Chang CY, Goldford JE, Sanchez-Gorostiaga A, Sánchez Á. Functional attractors in microbial community assembly. Cell Systems. PMID 34653368 DOI: 10.1016/j.cels.2021.09.011 |
0.818 |
|
| 2021 |
Dukovski I, Bajić D, Chacón JM, Quintin M, Vila JCC, Sulheim S, Pacheco AR, Bernstein DB, Riehl WJ, Korolev KS, Sanchez A, Harcombe WR, Segrè D. A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS). Nature Protocols. PMID 34635859 DOI: 10.1038/s41596-021-00593-3 |
0.781 |
|
| 2021 |
Chang CY, Vila JCC, Bender M, Li R, Mankowski MC, Bassette M, Borden J, Golfier S, Sanchez PGL, Waymack R, Zhu X, Diaz-Colunga J, Estrela S, Rebolleda-Gomez M, Sanchez A. Engineering complex communities by directed evolution. Nature Ecology & Evolution. PMID 33986540 DOI: 10.1038/s41559-021-01457-5 |
0.792 |
|
| 2021 |
Estrela S, Sánchez Á, Rebolleda-Gómez M. Multi-Replicated Enrichment Communities as a Model System in Microbial Ecology. Frontiers in Microbiology. 12: 657467. PMID 33897672 DOI: 10.3389/fmicb.2021.657467 |
0.802 |
|
| 2021 |
Estrela S, Sanchez-Gorostiaga A, Vila JC, Sanchez A. Nutrient dominance governs the assembly of microbial communities in mixed nutrient environments. Elife. 10. PMID 33877964 DOI: 10.7554/eLife.65948 |
0.812 |
|
| 2021 |
Senne de Oliveira Lino F, Bajic D, Vila JCC, Sánchez A, Sommer MOA. Complex yeast-bacteria interactions affect the yield of industrial ethanol fermentation. Nature Communications. 12: 1498. PMID 33686084 DOI: 10.1038/s41467-021-21844-7 |
0.736 |
|
| 2021 |
Sánchez Á, Vila JCC, Chang CY, Diaz-Colunga J, Estrela S, Rebolleda-Gomez M. Directed Evolution of Microbial Communities. Annual Review of Biophysics. PMID 33646814 DOI: 10.1146/annurev-biophys-101220-072829 |
0.781 |
|
| 2020 |
Chang CY, Osborne ML, Bajic D, Sanchez A. Artificially selecting bacterial communities using propagule strategies. Evolution; International Journal of Organic Evolution. PMID 32888315 DOI: 10.1111/Evo.14092 |
0.828 |
|
| 2020 |
Vila JCC, Liu YY, Sanchez A. Dissimilarity-Overlap analysis of replicate enrichment communities. The Isme Journal. PMID 32555503 DOI: 10.1038/S41396-020-0702-7 |
0.573 |
|
| 2020 |
Shou W, Mitri S, Sanchez A. Decision letter: Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity Elife. DOI: 10.7554/Elife.53433.Sa1 |
0.427 |
|
| 2019 |
Sanchez A. Defining Higher-Order Interactions in Synthetic Ecology: Lessons from Physics and Quantitative Genetics. Cell Systems. 9: 519-520. PMID 31951552 DOI: 10.1016/J.Cels.2019.11.009 |
0.31 |
|
| 2019 |
Sanchez-Gorostiaga A, Bajić D, Osborne ML, Poyatos JF, Sanchez A. High-order interactions distort the functional landscape of microbial consortia. Plos Biology. 17: e3000550. PMID 31830028 DOI: 10.1371/Journal.Pbio.3000550 |
0.821 |
|
| 2019 |
Bajic D, Sanchez A. The ecology and evolution of microbial metabolic strategies. Current Opinion in Biotechnology. 62: 123-128. PMID 31670179 DOI: 10.1016/J.Copbio.2019.09.003 |
0.767 |
|
| 2019 |
Marsland R, Cui W, Goldford J, Sanchez A, Korolev K, Mehta P. Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities. Plos Computational Biology. 15: e1006793. PMID 30721227 DOI: 10.1371/Journal.Pcbi.1006793 |
0.53 |
|
| 2018 |
Bajić D, Vila JCC, Blount ZD, Sánchez A. On the deformability of an empirical fitness landscape by microbial evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 30322921 DOI: 10.1073/Pnas.1808485115 |
0.762 |
|
| 2018 |
Goldford JE, Lu N, Bajić D, Estrela S, Tikhonov M, Sanchez-Gorostiaga A, Segrè D, Mehta P, Sanchez A. Emergent simplicity in microbial community assembly. Science (New York, N.Y.). 361: 469-474. PMID 30072533 DOI: 10.1126/Science.Aat1168 |
0.813 |
|
| 2018 |
Choubey S, Kondev J, Sanchez A. Distribution of Initiation Times Reveals Mechanisms of Transcriptional Regulation in Single Cells. Biophysical Journal. 114: 2072-2082. PMID 29742401 DOI: 10.1016/J.Bpj.2018.03.031 |
0.616 |
|
| 2018 |
Baskerville M, Biro A, Blazanin M, Chang C, Hallworth A, Sonnert N, Vila JCC, Sanchez A. Ecological effects of cellular computing in microbial populations Natural Computing. 17: 811-822. DOI: 10.1007/S11047-018-9708-8 |
0.506 |
|
| 2017 |
Rauch J, Kondev J, Sanchez A. Cooperators trade off ecological resilience and evolutionary stability in public goods games. Journal of the Royal Society, Interface. 14. PMID 28148770 DOI: 10.1098/Rsif.2016.0967 |
0.63 |
|
| 2015 |
Choubey S, Kondev J, Sanchez A. Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules. Plos Computational Biology. 11: e1004345. PMID 26544860 DOI: 10.1371/Journal.Pcbi.1004345 |
0.614 |
|
| 2015 |
Axelrod K, Sanchez A, Gore J. Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network. Elife. 4. PMID 26302311 DOI: 10.7554/Elife.07935 |
0.451 |
|
| 2015 |
Axelrod K, Sanchez A, Gore J. Author response: Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network Elife. DOI: 10.7554/Elife.07935.023 |
0.404 |
|
| 2014 |
Chen A, Sanchez A, Dai L, Gore J. Dynamics of a producer-freeloader ecosystem on the brink of collapse. Nature Communications. 5: 3713. PMID 24785661 DOI: 10.1038/Ncomms4713 |
0.52 |
|
| 2014 |
Harrington KI, Sanchez A. Eco-evolutionary dynamics of complex social strategies in microbial communities. Communicative & Integrative Biology. 7: e28230. PMID 24778764 DOI: 10.4161/Cib.28230 |
0.419 |
|
| 2014 |
Choubey S, Sanchez A, Kondev J. Deciphering Transcriptional Dynamics in Vivo by Counting Nascent RNAs Biophysical Journal. 106: 375a. DOI: 10.1016/J.Bpj.2013.11.2123 |
0.609 |
|
| 2013 |
Sanchez A, Golding I. Genetic determinants and cellular constraints in noisy gene expression. Science (New York, N.Y.). 342: 1188-93. PMID 24311680 DOI: 10.1126/Science.1242975 |
0.315 |
|
| 2013 |
Sanchez A, Gore J. feedback between population and evolutionary dynamics determines the fate of social microbial populations. Plos Biology. 11: e1001547. PMID 23637571 DOI: 10.1371/Journal.Pbio.1001547 |
0.466 |
|
| 2013 |
Sanchez A, Choubey S, Kondev J. Stochastic models of transcription: from single molecules to single cells. Methods (San Diego, Calif.). 62: 13-25. PMID 23557991 DOI: 10.1016/J.Ymeth.2013.03.026 |
0.622 |
|
| 2013 |
Sanchez A, Choubey S, Kondev J. Regulation of noise in gene expression. Annual Review of Biophysics. 42: 469-91. PMID 23527780 DOI: 10.1146/Annurev-Biophys-083012-130401 |
0.623 |
|
| 2012 |
Garcia HG, Sanchez A, Boedicker JQ, Osborne M, Gelles J, Kondev J, Phillips R. Operator sequence alters gene expression independently of transcription factor occupancy in bacteria. Cell Reports. 2: 150-61. PMID 22840405 DOI: 10.1016/J.Celrep.2012.06.004 |
0.743 |
|
| 2011 |
Sanchez A, Osborne ML, Friedman LJ, Kondev J, Gelles J. Mechanism of transcriptional repression at a bacterial promoter by analysis of single molecules. The Embo Journal. 30: 3940-6. PMID 21829165 DOI: 10.1038/Emboj.2011.273 |
0.755 |
|
| 2011 |
Sanchez A, Garcia HG, Jones D, Phillips R, Kondev J. Effect of promoter architecture on the cell-to-cell variability in gene expression. Plos Computational Biology. 7: e1001100. PMID 21390269 DOI: 10.1371/Journal.Pcbi.1001100 |
0.619 |
|
| 2010 |
Garcia HG, Sanchez A, Kuhlman T, Kondev J, Phillips R. Transcription by the numbers redux: experiments and calculations that surprise. Trends in Cell Biology. 20: 723-33. PMID 20801657 DOI: 10.1016/J.Tcb.2010.07.002 |
0.613 |
|
| 2009 |
Sanchez A, Hol F, Kondev J, Wiggins P. Exploiting stochastic gene expression to infer promoter regulatory mechanisms: The Moment Analysis Method Biophysical Journal. 96: 305a. DOI: 10.1016/J.Bpj.2008.12.1522 |
0.601 |
|
| 2008 |
Sánchez A, Kondev J. Transcriptional control of noise in gene expression. Proceedings of the National Academy of Sciences of the United States of America. 105: 5081-6. PMID 18353986 DOI: 10.1073/Pnas.0707904105 |
0.603 |
|
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