| Year |
Citation |
Score |
| 2022 |
Asimi V, Sampath Kumar A, Niskanen H, Riemenschneider C, Hetzel S, Naderi J, Fasching N, Popitsch N, Du M, Kretzmer H, Smith ZD, Weigert R, Walther M, Mamde S, Meierhofer D, ... ... Ameres SL, et al. Hijacking of transcriptional condensates by endogenous retroviruses. Nature Genetics. 54: 1238-1247. PMID 35864192 DOI: 10.1038/s41588-022-01132-w |
0.449 |
|
| 2022 |
Fasching N, Petržílek J, Popitsch N, Herzog VA, Ameres SL. Transcriptome-Wide Profiling of RNA Stability. Methods in Molecular Biology (Clifton, N.J.). 2404: 311-330. PMID 34694617 DOI: 10.1007/978-1-0716-1851-6_17 |
0.468 |
|
| 2021 |
Bhat P, Burkard TR, Herzog VA, Pauli A, Ameres SL. Systematic refinement of gene annotations by parsing mRNA 3' end sequencing datasets. Methods in Enzymology. 655: 205-223. PMID 34183122 DOI: 10.1016/bs.mie.2021.03.016 |
0.331 |
|
| 2020 |
Xie W, Sowemimo I, Hayashi R, Wang J, Burkard TR, Brennecke J, Ameres SL, Patel DJ. Structure-function analysis of microRNA 3'-end trimming by Nibbler. Proceedings of the National Academy of Sciences of the United States of America. PMID 33199607 DOI: 10.1073/pnas.2018156117 |
0.497 |
|
| 2020 |
Herzog VA, Fasching N, Ameres SL. Determining mRNA Stability by Metabolic RNA Labeling and Chemical Nucleoside Conversion. Methods in Molecular Biology (Clifton, N.J.). 2062: 169-189. PMID 31768977 DOI: 10.1007/978-1-4939-9822-7_9 |
0.532 |
|
| 2019 |
Reichholf B, Herzog VA, Fasching N, Manzenreither RA, Sowemimo I, Ameres SL. Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis. Molecular Cell. PMID 31350118 DOI: 10.1016/j.molcel.2019.06.018 |
0.642 |
|
| 2019 |
Matsushima W, Herzog VA, Neumann T, Gapp K, Zuber J, Ameres SL, Miska EA. Sequencing cell-type-specific transcriptomes with SLAM-ITseq. Nature Protocols. PMID 31243395 DOI: 10.1038/s41596-019-0179-x |
0.495 |
|
| 2018 |
Kroupova A, Ivascu A, Reimão-Pinto MM, Ameres SL, Jinek M. Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Research. PMID 30462292 DOI: 10.2210/Pdb6I0U/Pdb |
0.547 |
|
| 2018 |
Sharma U, Sun F, Conine CC, Reichholf B, Kukreja S, Herzog VA, Ameres SL, Rando OJ. Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm. Developmental Cell. PMID 30057273 DOI: 10.1016/J.Devcel.2018.06.023 |
0.535 |
|
| 2018 |
Reimão-Pinto MM, Rodrigues-Viana AM, Ameres SL. Analysis of 3' End Modifications in microRNAs by High-Throughput Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1823: 115-139. PMID 29959678 DOI: 10.1007/978-1-4939-8624-8_10 |
0.572 |
|
| 2018 |
Matsushima W, Herzog VA, Neumann T, Gapp K, Zuber J, Ameres SL, Miska EA. SLAM-ITseq: Sequencing cell type-specific transcriptomes without cell sorting. Development (Cambridge, England). PMID 29945865 DOI: 10.1242/dev.164640 |
0.424 |
|
| 2018 |
Jantsch M, Quattrone A, O'Connell M, Helm M, Frye M, Macias-Gonzales M, Ohman M, Ameres S, Willems L, Fuks F, Oulas A, Vanacova S, Nielsen H, Bousquet-Antonelli C, Motorin Y, et al. Positioning Europe for the EPITRANSCRIPTOMICS challenge. Rna Biology. 1-8. PMID 29671387 DOI: 10.1080/15476286.2018.1460996 |
0.35 |
|
| 2018 |
Muhar M, Ebert A, Neumann T, Umkehrer C, Jude J, Wieshofer C, Rescheneder P, Lipp JJ, Herzog VA, Reichholf B, Cisneros DA, Hoffmann T, Schlapansky MF, Bhat P, von Haeseler A, ... ... Ameres SL, et al. SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis. Science (New York, N.Y.). PMID 29622725 DOI: 10.1126/Science.Aao2793 |
0.427 |
|
| 2018 |
Alberti C, Manzenreither RA, Sowemimo I, Burkard TR, Wang J, Mahofsky K, Ameres SL, Cochella L. Cell-type specific sequencing of microRNAs from complex animal tissues. Nature Methods. PMID 29481550 DOI: 10.1038/Nmeth.4610 |
0.578 |
|
| 2017 |
Herzog VA, Reichholf B, Neumann T, Rescheneder P, Bhat P, Burkard TR, Wlotzka W, von Haeseler A, Zuber J, Ameres SL. Thiol-linked alkylation of RNA to assess expression dynamics. Nature Methods. PMID 28945705 DOI: 10.1038/nmeth.4435 |
0.564 |
|
| 2017 |
Herzog VA, Reichholf B, Ameres S. Thiol-linked alkylation for the metabolic sequencing of RNA (SLAMseq) Protocol Exchange. DOI: 10.1038/Protex.2017.105 |
0.472 |
|
| 2016 |
Hayashi R, Schnabl J, Handler D, Mohn F, Ameres SL, Brennecke J. Genetic and mechanistic diversity of piRNA 3'-end formation. Nature. PMID 27851737 DOI: 10.1038/nature20162 |
0.571 |
|
| 2016 |
Reimão-Pinto MM, Manzenreither RA, Burkard TR, Sledz P, Jinek M, Mechtler K, Ameres SL. Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila. The Embo Journal. PMID 27729457 DOI: 10.15252/Embj.201695164 |
0.539 |
|
| 2015 |
Reimão-Pinto MM, Ignatova V, Burkard TR, Hung JH, Manzenreither RA, Sowemimo I, Herzog VA, Reichholf B, Fariña-Lopez S, Ameres SL. Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila. Molecular Cell. 59: 203-16. PMID 26145176 DOI: 10.1016/J.Molcel.2015.05.033 |
0.637 |
|
| 2015 |
Bortolamiol-Becet D, Hu F, Jee D, Wen J, Okamura K, Lin CJ, Ameres SL, Lai EC. Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor. Molecular Cell. PMID 26145174 DOI: 10.1016/J.Molcel.2015.05.034 |
0.542 |
|
| 2015 |
Herzog VA, Ameres SL. Approaching the Golden Fleece a Molecule at a Time: Biophysical Insights into Argonaute-Instructed Nucleic Acid Interactions. Molecular Cell. 59: 4-7. PMID 26140366 DOI: 10.1016/j.molcel.2015.06.021 |
0.38 |
|
| 2014 |
Reimão-Pinto MM, Ignatova V, Burkard TR, Hung JH, Manzenreither RA, Sowemimo I, Herzog VA, Reichholf B, Fariña-Lopez S, Ameres SL. Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila Molecular Cell. DOI: 10.1016/j.molcel.2015.05.033 |
0.531 |
|
| 2013 |
Ameres SL, Zamore PD. Diversifying microRNA sequence and function. Nature Reviews. Molecular Cell Biology. 14: 475-88. PMID 23800994 DOI: 10.1038/nrm3611 |
0.628 |
|
| 2012 |
Xie J, Ameres SL, Friedline R, Hung JH, Zhang Y, Xie Q, Zhong L, Su Q, He R, Li M, Li H, Mu X, Zhang H, Broderick JA, Kim JK, et al. Long-term, efficient inhibition of microRNA function in mice using rAAV vectors. Nature Methods. 9: 403-9. PMID 22388288 DOI: 10.1038/Nmeth.1903 |
0.615 |
|
| 2011 |
Han BW, Hung JH, Weng Z, Zamore PD, Ameres SL. The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1. Current Biology : Cb. 21: 1878-87. PMID 22055293 DOI: 10.1016/J.Cub.2011.09.034 |
0.71 |
|
| 2011 |
Xie J, Xie Q, Zhang H, Ameres SL, Hung JH, Su Q, He R, Mu X, Seher Ahmed S, Park S, Kato H, Li C, Mueller C, Mello CC, Weng Z, et al. MicroRNA-regulated, systemically delivered rAAV9: a step closer to CNS-restricted transgene expression. Molecular Therapy : the Journal of the American Society of Gene Therapy. 19: 526-35. PMID 21179009 DOI: 10.1038/Mt.2010.279 |
0.62 |
|
| 2011 |
Ameres SL, Hung JH, Xu J, Weng Z, Zamore PD. Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins. Rna (New York, N.Y.). 17: 54-63. PMID 21106652 DOI: 10.1261/Rna.2498411 |
0.636 |
|
| 2010 |
Ameres SL, Horwich MD, Hung JH, Xu J, Ghildiyal M, Weng Z, Zamore PD. Target RNA-directed trimming and tailing of small silencing RNAs. Science (New York, N.Y.). 328: 1534-9. PMID 20558712 DOI: 10.1126/Science.1187058 |
0.728 |
|
| 2010 |
Ameres SL, Fukunaga R. Riding in silence: a little snowboarding, a lot of small RNAs. Silence. 1: 8. PMID 20230614 DOI: 10.1186/1758-907X-1-8 |
0.678 |
|
| 2008 |
Tafer H, Ameres SL, Obernosterer G, Gebeshuber CA, Schroeder R, Martinez J, Hofacker IL. The impact of target site accessibility on the design of effective siRNAs. Nature Biotechnology. 26: 578-83. PMID 18438400 DOI: 10.1038/nbt1404 |
0.507 |
|
| 2007 |
Ameres SL, Martinez J, Schroeder R. Molecular basis for target RNA recognition and cleavage by human RISC. Cell. 130: 101-12. PMID 17632058 DOI: 10.1016/j.cell.2007.04.037 |
0.569 |
|
| 2007 |
Ameres SL, Shcherbakov D, Nikonova E, Piendl W, Schroeder R, Semrad K. RNA chaperone activity of L1 ribosomal proteins: phylogenetic conservation and splicing inhibition. Nucleic Acids Research. 35: 3752-63. PMID 17517772 DOI: 10.1093/nar/gkm318 |
0.476 |
|
| 2007 |
Ameres SL. RNA interference: Mechanistic analysis of the human RNA interference effector complex | RNA-interferenz - Mechanistische analyse des humanen RNA-interferenz - Effektor-komplexes Biospektrum. 13: 756-758. |
0.464 |
|
| 2006 |
Leuschner PJ, Ameres SL, Kueng S, Martinez J. Cleavage of the siRNA passenger strand during RISC assembly in human cells. Embo Reports. 7: 314-20. PMID 16439995 DOI: 10.1038/sj.embor.7400637 |
0.554 |
|
| 2005 |
Ameres SL, Drueppel L, Pfleiderer K, Schmidt A, Hillen W, Berens C. Inducible DNA-loop formation blocks transcriptional activation by an SV40 enhancer. The Embo Journal. 24: 358-67. PMID 15650749 DOI: 10.1038/sj.emboj.7600531 |
0.305 |
|
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