Edward G. Ruby - Publications

Affiliations: 
University of Hawai'i at Manoa, Honolulu, HI 
Area:
Microbiology

112 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bongrand C, Moriano-Gutierrez S, Arevalo P, McFall-Ngai M, Visick KL, Polz M, Ruby EG. Using Colonization Assays and Comparative Genomics To Discover Symbiosis Behaviors and Factors in Vibrio fischeri. Mbio. 11. PMID 32127462 DOI: 10.1128/mBio.03407-19  0.36
2019 Aschtgen MS, Brennan CA, Nikolakakis K, Cohen S, McFall-Ngai M, Ruby EG. Insights into flagellar function and mechanism from the squid-vibrio symbiosis. Npj Biofilms and Microbiomes. 5: 32. PMID 31666982 DOI: 10.1038/s41522-019-0106-5  0.68
2016 Bongrand C, Koch EJ, Moriano-Gutierrez S, Cordero OX, McFall-Ngai M, Polz MF, Ruby EG. A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior. The Isme Journal. PMID 27128997 DOI: 10.1038/ismej.2016.69  1
2016 Schwartzman JA, Ruby EG. Stress as a Normal Cue in the Symbiotic Environment. Trends in Microbiology. PMID 27004825 DOI: 10.1016/j.tim.2016.02.012  1
2016 Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR. Diverse high-torque bacterial flagellar motors assemble wider stator rings using a conserved protein scaffold. Proceedings of the National Academy of Sciences of the United States of America. PMID 26976588 DOI: 10.1073/pnas.1518952113  1
2016 Schwartzman JA, Ruby EG. A conserved chemical dialog of mutualism: lessons from squid and vibrio. Microbes and Infection / Institut Pasteur. 18: 1-10. PMID 26384815 DOI: 10.1016/j.micinf.2015.08.016  1
2016 Nikolakakis K, Monfils K, Moriano-Gutierrez S, Brennan CA, Ruby EG. Characterization of the Vibrio fischeri fatty acid chemoreceptors, VfcB and VfcB2 Applied and Environmental Microbiology. 82: 696-704. DOI: 10.1128/AEM.02856-15  1
2015 Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, ... Ruby EG, et al. MICROBIOME. A unified initiative to harness Earth's microbiomes. Science (New York, N.Y.). 350: 507-8. PMID 26511287 DOI: 10.1126/science.aac8480  1
2015 Aschtgen MS, Wetzel K, Goldman W, McFall-Ngai M, Ruby E. Vibrio fischeri-derived outer membrane vesicles trigger host development. Cellular Microbiology. PMID 26399913 DOI: 10.1111/cmi.12525  1
2015 Pan M, Schwartzman JA, Dunn AK, Lu Z, Ruby EG. A Single Host-Derived Glycan Impacts Key Regulatory Nodes of Symbiont Metabolism in a Coevolved Mutualism. Mbio. 6. PMID 26173698 DOI: 10.1128/mBio.00811-15  1
2015 Schwartzman JA, Koch E, Heath-Heckman EA, Zhou L, Kremer N, McFall-Ngai MJ, Ruby EG. The chemistry of negotiation: rhythmic, glycan-driven acidification in a symbiotic conversation. Proceedings of the National Academy of Sciences of the United States of America. 112: 566-71. PMID 25550509 DOI: 10.1073/pnas.1418580112  1
2015 Nikolakakis K, Lehnert E, McFall-Ngai MJ, Ruby EG. Use of hybridization chain reaction-fluorescent in situ hybridization to track gene expression by both partners during initiation of symbiosis Applied and Environmental Microbiology. 81: 4728-4735. DOI: 10.1128/AEM.00890-15  1
2014 Miyashiro T, Oehlert D, Ray VA, Visick KL, Ruby EG. The putative oligosaccharide translocase SypK connects biofilm formation with quorum signaling in Vibrio fischeri. Microbiologyopen. 3: 836-48. PMID 25257018 DOI: 10.1002/mbo3.199  1
2014 Kremer N, Schwartzman J, Augustin R, Zhou L, Ruby EG, Hourdez S, McFall-Ngai MJ. The dual nature of haemocyanin in the establishment and persistence of the squid-vibrio symbiosis. Proceedings. Biological Sciences / the Royal Society. 281: 20140504. PMID 24807261 DOI: 10.1098/rspb.2014.0504  1
2014 Brennan CA, Hunt JR, Kremer N, Krasity BC, Apicella MA, McFall-Ngai MJ, Ruby EG. A model symbiosis reveals a role for sheathed-flagellum rotation in the release of immunogenic lipopolysaccharide. Elife. 3: e01579. PMID 24596150 DOI: 10.7554/eLife.01579  1
2014 Studer SV, Schwartzman JA, Ho JS, Geske GD, Blackwell HE, Ruby EG. Non-native acylated homoserine lactones reveal that LuxIR quorum sensing promotes symbiont stability. Environmental Microbiology. 16: 2623-34. PMID 24191970 DOI: 10.1111/1462-2920.12322  1
2014 Koch EJ, Miyashiro T, McFall-Ngai MJ, Ruby EG. Features governing symbiont persistence in the squid-vibrio association. Molecular Ecology. 23: 1624-34. PMID 24118200 DOI: 10.1111/mec.12474  1
2013 Kremer N, Philipp EE, Carpentier MC, Brennan CA, Kraemer L, Altura MA, Augustin R, Häsler R, Heath-Heckman EA, Peyer SM, Schwartzman J, Rader BA, Ruby EG, Rosenstiel P, McFall-Ngai MJ. Initial symbiont contact orchestrates host-organ-wide transcriptional changes that prime tissue colonization. Cell Host & Microbe. 14: 183-94. PMID 23954157 DOI: 10.1016/j.chom.2013.07.006  1
2013 Brennan CA, Mandel MJ, Gyllborg MC, Thomasgard KA, Ruby EG. Genetic determinants of swimming motility in the squid light-organ symbiont Vibrio fischeri. Microbiologyopen. 2: 576-94. PMID 23907990 DOI: 10.1002/mbo3.96  1
2013 Altura MA, Heath-Heckman EA, Gillette A, Kremer N, Krachler AM, Brennan C, Ruby EG, Orth K, McFall-Ngai MJ. The first engagement of partners in the Euprymna scolopes-Vibrio fischeri symbiosis is a two-step process initiated by a few environmental symbiont cells. Environmental Microbiology. 15: 2937-50. PMID 23819708 DOI: 10.1111/1462-2920.12179  1
2013 McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-LoÅ¡o T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, ... ... Ruby EG, et al. Animals in a bacterial world, a new imperative for the life sciences. Proceedings of the National Academy of Sciences of the United States of America. 110: 3229-36. PMID 23391737 DOI: 10.1073/pnas.1218525110  1
2012 Mandel MJ, Schaefer AL, Brennan CA, Heath-Heckman EA, Deloney-Marino CR, McFall-Ngai MJ, Ruby EG. Squid-derived chitin oligosaccharides are a chemotactic signal during colonization by Vibrio fischeri. Applied and Environmental Microbiology. 78: 4620-6. PMID 22522684 DOI: 10.1128/AEM.00377-12  1
2012 Miyashiro T, Ruby EG. Shedding light on bioluminescence regulation in Vibrio fischeri. Molecular Microbiology. 84: 795-806. PMID 22500943 DOI: 10.1111/j.1365-2958.2012.08065.x  1
2012 Post DM, Yu L, Krasity BC, Choudhury B, Mandel MJ, Brennan CA, Ruby EG, McFall-Ngai MJ, Gibson BW, Apicella MA. O-antigen and core carbohydrate of Vibrio fischeri lipopolysaccharide: composition and analysis of their role in Euprymna scolopes light organ colonization. The Journal of Biological Chemistry. 287: 8515-30. PMID 22247546 DOI: 10.1074/jbc.M111.324012  1
2012 Cao X, Studer SV, Wassarman K, Zhang Y, Ruby EG, Miyashiro T. The novel sigma factor-like regulator RpoQ controls luminescence, chitinase activity, and motility in Vibrio fischeri. Mbio. 3. PMID 22233679 DOI: 10.1128/mBio.00285-11  1
2012 Wollenberg MS, Preheim SP, Polz MF, Ruby EG. Polyphyly of non-bioluminescent Vibrio fischeri sharing a lux-locus deletion Environmental Microbiology. 14: 655-668. PMID 21980988 DOI: 10.1111/j.1462-2920.2011.02608.x  1
2012 Wollenberg MS, Ruby EG. Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations. The Isme Journal. 6: 352-62. PMID 21776028 DOI: 10.1038/ismej.2011.92  1
2011 Miyashiro T, Klein W, Oehlert D, Cao X, Schwartzman J, Ruby EG. The N-acetyl-D-glucosamine repressor NagC of Vibrio fischeri facilitates colonization of Euprymna scolopes. Molecular Microbiology. 82: 894-903. PMID 21992506 DOI: 10.1111/j.1365-2958.2011.07858.x  1
2011 Septer AN, Wang Y, Ruby EG, Stabb EV, Dunn AK. The haem-uptake gene cluster in Vibrio fischeri is regulated by Fur and contributes to symbiotic colonization. Environmental Microbiology. 13: 2855-64. PMID 21883801 DOI: 10.1111/j.1462-2920.2011.02558.x  1
2011 Wang Y, Ruby EG. The roles of NO in microbial symbioses. Cellular Microbiology. 13: 518-26. PMID 21338463 DOI: 10.1111/j.1462-5822.2011.01576.x  1
2010 Pollack-Berti A, Wollenberg MS, Ruby EG. Natural transformation of Vibrio fischeri requires tfoX and tfoY. Environmental Microbiology. 12: 2302-11. PMID 21966921 DOI: 10.1111/j.1462-2920.2010.02250.x  1
2010 Wang Y, Dunn AK, Wilneff J, McFall-Ngai MJ, Spiro S, Ruby EG. Vibrio fischeri flavohaemoglobin protects against nitric oxide during initiation of the squid-Vibrio symbiosis. Molecular Microbiology. 78: 903-15. PMID 20815823 DOI: 10.1111/j.1365-2958.2010.07376.x  1
2010 Miyashiro T, Wollenberg MS, Cao X, Oehlert D, Ruby EG. A single qrr gene is necessary and sufficient for LuxO-mediated regulation in Vibrio fischeri. Molecular Microbiology. 77: 1556-67. PMID 20662783 DOI: 10.1111/j.1365-2958.2010.07309.x  1
2010 Dunn AK, Karr EA, Wang Y, Batton AR, Ruby EG, Stabb EV. The alternative oxidase (AOX) gene in Vibrio fischeri is controlled by NsrR and upregulated in response to nitric oxide. Molecular Microbiology. 77: 44-55. PMID 20487270 DOI: 10.1111/j.1365-2958.2010.07194.x  1
2010 Wang Y, Dufour YS, Carlson HK, Donohue TJ, Marletta MA, Ruby EG. H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri. Proceedings of the National Academy of Sciences of the United States of America. 107: 8375-80. PMID 20404170 DOI: 10.1073/pnas.1003571107  1
2010 Wier AM, Nyholm SV, Mandel MJ, Massengo-Tiassé RP, Schaefer AL, Koroleva I, Splinter-Bondurant S, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, ... ... Ruby EG, et al. Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 107: 2259-64. PMID 20133870 DOI: 10.1073/pnas.0909712107  0.72
2010 Goodrich-Blair H, Ané JM, Bever JD, Bordenstein SR, Bright M, Chaston JM, Clay K, Currie CR, Douglas AE, Gerardo N, Harrison MJ, Ley RE, McFall-Ngai M, Mukherjee A, Rader B, ... ... Ruby EG, et al. Symbiosis research, technology, and education: Proceedings of the 6th International Symbiosis Society Congress held in Madison Wisconsin, USA, August 2009 Symbiosis. 51: 1-12. DOI: 10.1007/s13199-010-0076-0  1
2009 Nyholm SV, Stewart JJ, Ruby EG, McFall-Ngai MJ. Recognition between symbiotic Vibrio fischeri and the haemocytes of Euprymna scolopes. Environmental Microbiology. 11: 483-93. PMID 19196278 DOI: 10.1111/j.1462-2920.2008.01788.x  1
2009 Mandel MJ, Wollenberg MS, Stabb EV, Visick KL, Ruby EG. A single regulatory gene is sufficient to alter bacterial host range. Nature. 458: 215-8. PMID 19182778 DOI: 10.1038/nature07660  1
2009 Wollenberg MS, Ruby EG. Population structure of vibrio fischeri within the light organs of euprymna scolopes squid from two oahu (Hawaii) populations Applied and Environmental Microbiology. 75: 193-202. PMID 18997024 DOI: 10.1128/AEM.01792-08  1
2008 Ruby EG. Symbiotic conversations are revealed under genetic interrogation. Nature Reviews. Microbiology. 6: 752-62. PMID 18794913 DOI: 10.1038/nrmicro1958  1
2008 Chun CK, Troll JV, Koroleva I, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, Ruby EG, McFall-Ngai MJ. Effects of colonization, luminescence, and autoinducer on host transcription during development of the squid-vibrio association. Proceedings of the National Academy of Sciences of the United States of America. 105: 11323-8. PMID 18682555 DOI: 10.1073/pnas.0802369105  1
2008 Studer SV, Mandel MJ, Ruby EG. AinS quorum sensing regulates the Vibrio fischeri acetate switch. Journal of Bacteriology. 190: 5915-23. PMID 18487321 DOI: 10.1128/JB.00148-08  1
2008 Mandel MJ, Stabb EV, Ruby EG. Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions. Bmc Genomics. 9: 138. PMID 18366731 DOI: 10.1186/1471-2164-9-138  1
2008 Adin DM, Phillips NJ, Gibson BW, Apicella MA, Ruby EG, McFall-Ngai MJ, Hall DB, Stabb EV. Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri. Applied and Environmental Microbiology. 74: 633-44. PMID 18065606 DOI: 10.1128/AEM.02138-07  1
2007 Antunes LC, Schaefer AL, Ferreira RB, Qin N, Stevens AM, Ruby EG, Greenberg EP. Transcriptome analysis of the Vibrio fischeri LuxR-LuxI regulon. Journal of Bacteriology. 189: 8387-91. PMID 17827287 DOI: 10.1128/JB.00736-07  1
2007 Hussa EA, O'Shea TM, Darnell CL, Ruby EG, Visick KL. Two-component response regulators of Vibrio fischeri: identification, mutagenesis, and characterization. Journal of Bacteriology. 189: 5825-38. PMID 17586650 DOI: 10.1128/JB.00242-07  1
2007 Nelson EJ, Tunsjø HS, Fidopiastis PM, Sørum H, Ruby EG. A novel lux operon in the cryptically bioluminescent fish pathogen Vibrio salmonicida is associated with virulence. Applied and Environmental Microbiology. 73: 1825-33. PMID 17277225 DOI: 10.1128/AEM.02255-06  1
2007 Whistler CA, Koropatnick TA, Pollack A, McFall-Ngai MJ, Ruby EG. The GacA global regulator of Vibrio fischeri is required for normal host tissue responses that limit subsequent bacterial colonization. Cellular Microbiology. 9: 766-78. PMID 17081194 DOI: 10.1111/j.1462-5822.2006.00826.x  1
2006 Visick KL, Ruby EG. Vibrio fischeri and its host: it takes two to tango. Current Opinion in Microbiology. 9: 632-8. PMID 17049299 DOI: 10.1016/j.mib.2006.10.001  1
2006 Sycuro LK, Ruby EG, McFall-Ngai M. Confocal microscopy of the light organ crypts in juvenile Euprymna scolopes reveals their morphological complexity and dynamic function in symbiosis. Journal of Morphology. 267: 555-68. PMID 16429442 DOI: 10.1002/jmor.10422  1
2005 Lupp C, Ruby EG. Vibrio fischeri uses two quorum-sensing systems for the regulation of early and late colonization factors. Journal of Bacteriology. 187: 3620-9. PMID 15901683 DOI: 10.1128/JB.187.11.3620-3629.2005  1
2005 Ruby EG, Urbanowski M, Campbell J, Dunn A, Faini M, Gunsalus R, Lostroh P, Lupp C, McCann J, Millikan D, Schaefer A, Stabb E, Stevens A, Visick K, Whistler C, et al. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proceedings of the National Academy of Sciences of the United States of America. 102: 3004-9. PMID 15703294 DOI: 10.1073/pnas.0409900102  1
2004 Millikan DS, Ruby EG. Vibrio fischeri flagellin A is essential for normal motility and for symbiotic competence during initial squid light organ colonization. Journal of Bacteriology. 186: 4315-25. PMID 15205434 DOI: 10.1128/JB.186.13.4315-4325.2004  1
2004 Lupp C, Ruby EG. Vibrio fischeri LuxS and AinS: comparative study of two signal synthases. Journal of Bacteriology. 186: 3873-81. PMID 15175301 DOI: 10.1128/JB.186.12.3873-3881.2004  1
2004 Ruby E, Henderson B, McFall-Ngai M. Microbiology. We get by with a little help from our (little) friends. Science (New York, N.Y.). 303: 1305-7. PMID 14988540 DOI: 10.1126/science.1094662  1
2003 Whistler CA, Ruby EG. GacA regulates symbiotic colonization traits of Vibrio fischeri and facilitates a beneficial association with an animal host. Journal of Bacteriology. 185: 7202-12. PMID 14645281 DOI: 10.1128/JB.185.24.7202-7212.2003  1
2003 McCann J, Stabb EV, Millikan DS, Ruby EG. Population dynamics of Vibrio fischeri during infection of Euprymna scolopes. Applied and Environmental Microbiology. 69: 5928-34. PMID 14532046 DOI: 10.1128/AEM.69.10.5928-5934.2003  1
2003 Lupp C, Urbanowski M, Greenberg EP, Ruby EG. The Vibrio fischeri quorum-sensing systems ain and lux sequentially induce luminescence gene expression and are important for persistence in the squid host. Molecular Microbiology. 50: 319-31. PMID 14507383 DOI: 10.1046/j.1365-2958.2003.t01-1-03585.x  1
2003 Millikan DS, Ruby EG. FlrA, a sigma54-dependent transcriptional activator in Vibrio fischeri, is required for motility and symbiotic light-organ colonization. Journal of Bacteriology. 185: 3547-57. PMID 12775692 DOI: 10.1128/JB.185.12.3547-3557.2003  1
2003 Miyamoto CM, Dunlap PV, Ruby EG, Meighen EA. LuxO controls luxR expression in Vibrio harveyi: evidence for a common regulatory mechanism in Vibrio. Molecular Microbiology. 48: 537-48. PMID 12675810 DOI: 10.1046/j.1365-2958.2003.03453.x  1
2003 Stabb EV, Ruby EG. Contribution of pilA to competitive colonization of the squid Euprymna scolopes by Vibrio fischeri. Applied and Environmental Microbiology. 69: 820-6. PMID 12571000 DOI: 10.1128/AEM.69.2.820-826.2003  1
2002 Stabb EV, Ruby EG. RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae. Methods in Enzymology. 358: 413-26. PMID 12474404 DOI: 10.1016/S0076-6879(02)58106-4  1
2002 Lupp C, Hancock RE, Ruby EG. The Vibrio fischeri sapABCDF locus is required for normal growth, both in culture and in symbiosis. Archives of Microbiology. 179: 57-65. PMID 12471505 DOI: 10.1007/s00203-002-0502-7  1
2002 Fidopiastis PM, Miyamoto CM, Jobling MG, Meighen EA, Ruby EG. LitR, a new transcriptional activator in Vibrio fischeri, regulates luminescence and symbiotic light organ colonization. Molecular Microbiology. 45: 131-43. PMID 12100554 DOI: 10.1046/j.1365-2958.2002.02996.x  1
2002 Millikan DS, Ruby EG. Alterations in Vibrio fischeri motility correlate with a delay in symbiosis initiation and are associated with additional symbiotic colonization defects. Applied and Environmental Microbiology. 68: 2519-28. PMID 11976129 DOI: 10.1128/AEM.68.5.2519-2528.2002  1
2001 Aeckersberg F, Lupp C, Feliciano B, Ruby EG. Vibrio fischeri outer membrane protein OmpU plays a role in normal symbiotic colonization. Journal of Bacteriology. 183: 6590-7. PMID 11673429 DOI: 10.1128/JB.183.22.6590-6597.2001  1
2001 Stabb EV, Reich KA, Ruby EG. Vibrio fischeri genes hvnA and hvnB encode secreted NAD+-glycohydrolases Journal of Bacteriology. 183: 309-317. PMID 11114931 DOI: 10.1128/JB.183.1.309-317.2001  1
2000 McFall-Ngai MJ, Ruby EG. Developmental biology in marine invertebrate symbioses Current Opinion in Microbiology. 3: 603-607. PMID 11121780 DOI: 10.1016/S1369-5274(00)00147-8  1
2000 Nyholm SV, Stabb EV, Ruby EG, McFall-Ngai MJ. Establishment of an animal-bacterial association: recruiting symbiotic vibrios from the environment. Proceedings of the National Academy of Sciences of the United States of America. 97: 10231-5. PMID 10963683  1
2000 Graf J, Ruby EG. Novel effects of a transposon insertion in the Vibrio fischeri glnD gene: Defects in iron uptake and symbiotic persistence in addition to nitrogen utilization Molecular Microbiology. 37: 168-179. PMID 10931314 DOI: 10.1046/j.1365-2958.2000.01984.x  1
2000 Visick KL, Foster J, Doino J, McFall-Ngai M, Ruby EG. Vibrio fischeri lux genes play an important role in colonization and development of the host light organ Journal of Bacteriology. 182: 4578-4586. PMID 10913092 DOI: 10.1128/JB.182.16.4578-4586.2000  1
1999 Ruby EG. The Euprymna scolopes - Vibrio fischeri symbiosis: A biomedical model for the study of bacterial colonization of animal tissue Journal of Molecular Microbiology and Biotechnology. 1: 13-21. PMID 10941780  1
1999 Ruby EG, McFall-Ngai MJ. Oxygen-utilizing reactions and symbiotic colonization of the squid light organ by Vibrio fischeri Trends in Microbiology. 7: 414-420. PMID 10498950 DOI: 10.1016/S0966-842X(99)01588-7  1
1999 Fidopiastis PM, Sørum H, Ruby EG. Cryptic luminescence in the cold-water fish pathogen Vibrio salmonicida. Archives of Microbiology. 171: 205-9. PMID 10201098 DOI: 10.1007/s002030050700  1
1998 Nishiguchi MK, Ruby EG, McFall-Ngai MJ. Competitive dominance among strains of luminous bacteria provides an unusual form of evidence for parallel evolution in Sepiolid squid-vibrio symbioses. Applied and Environmental Microbiology. 64: 3209-13. PMID 9726861  1
1998 Visick KL, Ruby EG. The periplasmic, group III catalase of Vibrio fischeri is required for normal symbiotic competence and is induced both by oxidative stress and by approach to stationary phase Journal of Bacteriology. 180: 2087-2092. PMID 9555890  1
1998 Graf J, Ruby EG. Host-derived amino acids support the proliferation of symbiotic bacteria Proceedings of the National Academy of Sciences of the United States of America. 95: 1818-1822. PMID 9465100 DOI: 10.1073/pnas.95.4.1818  1
1998 Fidopiastis PM, von Boletzky S, Ruby EG. A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola. Journal of Bacteriology. 180: 59-64. PMID 9422593  1
1998 McFall-Ngai MJ, Ruby EG. Sepiolids and vibrios: When first they met. Reciprocal interactions between host and symbiont lead to the creation of a complex light-emitting organ Bioscience. 48: 257-265.  1
1998 Ruby EG, Lee KH. The Vibrio fischeri-Euprymna scolopes light organ association: Current ecological paradigms Applied and Environmental Microbiology. 64: 805-812.  1
1996 Visick KG, Ruby EG. Construction and symbiotic competence of a luxA-deletion mutant of Vibrio fischeri Gene. 175: 89-94. PMID 8917081 DOI: 10.1016/0378-1119(96)00129-1  1
1996 Ruby EG. Lessons from a cooperative, bacterial-animal association: The Vibrio fischeri-Euprymna scolopes light organ symbiosis Annual Review of Microbiology. 50: 591-624. PMID 8905092 DOI: 10.1146/annurev.micro.50.1.591  1
1996 Boettcher KJ, Ruby EG, McFall-Ngai MJ. Bioluminescence in the symbiotic squid Euprymna scolopes is controlled by a daily biological rhythm Journal of Comparative Physiology - a Sensory, Neural, and Behavioral Physiology. 179: 65-73.  1
1995 Boettcher KJ, Ruby EG. Detection and quantification of Vibrio fischeri autoinducer from symbiotic squid light organs Journal of Bacteriology. 177: 1053-1058. PMID 7860584  1
1995 Lee KH, Ruby EG. Symbiotic role of the viable but nonculturable state of Vibrio fischeri in Hawaiian coastal seawater Applied and Environmental Microbiology. 61: 278-283.  1
1994 Lee KH, Ruby EG. Competition between Vibrio fischeri strains during initiation and maintenance of a light organ symbiosis Journal of Bacteriology. 176: 1985-1991. PMID 8144466  1
1994 Graf J, Dunlap PV, Ruby EG. Effect of transposon-induced motility mutations on colonization of the host light organ by Vibrio fischeri Journal of Bacteriology. 176: 6986-6991. PMID 7961462  1
1994 Boettcher KJ, Ruby EG. Occurrence of plasmid DNA in the sepiolid squid symbiont Vibrio fischeri Current Microbiology. 29: 279-286. DOI: 10.1007/BF01577441  1
1994 Lee KH, Ruby EG. Effect of the squid host on the abundance and distribution of symbiotic Vibrio fischeri in nature Applied and Environmental Microbiology. 60: 1565-1571.  1
1993 Ruby EG, Asato LM. Growth and flagellation of Vibrio fischeri during initiation of the sepiolid squid light organ symbiosis Archives of Microbiology. 159: 160-167. PMID 8439236 DOI: 10.1007/BF00250277  1
1992 Ruby EG, McFall-Ngai MJ. A squid that glows in the night: Development of an animal-bacterial mutualism Journal of Bacteriology. 174: 4865-4870. PMID 1629148  1
1992 Romo AJ, Ruby EG, Saier MH. Effect of Bdellovibrio bacteriovirus infection on the phosphoenolpyruvate: Sugar phosphotransferase system in Escherichia coli: Evidence for activation of cytoplasmic proteolysis Research in Microbiology. 143: 5-14. PMID 1322553 DOI: 10.1016/0923-2508(92)90029-N  1
1992 Lee KH, Ruby EG. Detection of the light organ symbiont, Vibrio fischeri, in Hawaiian seawater by using lux gene probes Applied and Environmental Microbiology. 58: 942-947.  1
1991 Mcfall-Ngai MJ, Ruby EG. Symbiont recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism Science. 254: 1491-1494. PMID 1962208  1
1990 Gray KM, Ruby EG. Prey-derived signals regulating duration of the develomental growth phase of Bdellovibrio bacteriovorus Journal of Bacteriology. 172: 4002-4007. PMID 2193927  1
1990 Boettcher KJ, Ruby EG. Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes Journal of Bacteriology. 172: 3701-3706. PMID 2163384  1
1989 Gray KM, Ruby EG. Unbalanced growth as a normal feature of development of Bdellovibrio bacteriovorus Archives of Microbiology. 152: 420-424. PMID 2818131 DOI: 10.1007/BF00446922  1
1988 Arak Y, Ruby EG. A soluble enzyme activity that attaches free diaminopimelic acid to bdelloplast peptidoglycan Biochemistry®. 27: 2624-2629. PMID 3289615  1
1988 Ruby EG, McCabe JB. Metabolism of periplasmic membrane-derived oligosaccharides by the predatory bacterium Bdellovibrio bacteriovorus 109J. Journal of Bacteriology. 170: 646-52. PMID 3276663  1
1986 Ruby EG, McCabe JB. An ATP transport system in the intracellular bacterium, Bdellovibrio bacteriovorus 109J. Journal of Bacteriology. 167: 1066-70. PMID 3745115  1
1985 Ruby EG, McCabe JB, Barke JI. Uptake of intact nucleoside monophosphates by Bdellovibrio bacteriovorus 109J. Journal of Bacteriology. 163: 1087-94. PMID 4030692  1
1984 Ruby EG, Rittenberg SC. Attachment of diaminopimelic acid to bdelloplast peptidoglycan during intraperiplasmic growth of Bdellovibrio bacteriovorus 109J Journal of Bacteriology. 158: 597-602. PMID 6202674  1
1983 Ruby EG, Rittenberg SC. Differentiation after premature release of intraperiplasmically growing Bdellovibrio bacteriovorous Journal of Bacteriology. 154: 32-40. PMID 6403505  1
1982 Ruby EG, Jannasch HW. Physiological characteristics of Thiomicrospira sp. strain L-12 isolated from deep-sea hydrothermal vents Journal of Bacteriology. 149: 161-165. PMID 7054142  1
1980 Ruby EG, Hastings JW. Formation of hybrid luciferases from subunits of different species of Photobacterium Biochemistry. 19: 4989-4993. PMID 7459320  1
1979 Ruby EG, Hastings JW. Proteolytic sensitivity of the α subunit in luciferases of Photobacterium species Current Microbiology: An International Journal. 3: 157-159. DOI: 10.1007/BF02601859  1
1979 Ruby EG, Morin JG. Luminous enteric bacteria of marine fishes: A study of their distribution, densities, and dispersion Applied and Environmental Microbiology. 38: 406-411.  1
1978 Ruby EG, Morin JG. Specificity of symbiosis between deep-sea fishes and psychrotrophic luminous bacteria Deep-Sea Research. 25: 161-167. DOI: 10.1016/0146-6291(78)90003-6  1
1977 Ruby EG, Nealson KH. A luminous bacterium that emits yellow light Science. 196: 432-434. PMID 850787  1
1977 Ruby EG, Nealson KH. Pyruvate production and excretion by the luminous marine bacteria Applied and Environmental Microbiology. 34: 164-169. PMID 303077  1
1976 Ruby EG, Nealson KH. Symbiotic association of Photobacterium fischeri with the marine luminous fish Monocentris japonica; a model of symbiosis based on bacterial studies Biological Bulletin. 151: 574-586. PMID 1016667  1
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