Raul Andino - Publications

University of California, San Francisco, San Francisco, CA 
Cell Biology, Microbiology

148 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Aviner R, Lidsky PV, Xiao Y, Tassetto M, Kim D, Zhang L, McAlpine PL, Elias J, Frydman J, Andino R. SARS-CoV-2 Nsp1 cooperates with initiation factors EIF1 and 1A to selectively enhance translation of viral RNA. Plos Pathogens. 20: e1011535. PMID 38335237 DOI: 10.1371/journal.ppat.1011535  0.691
2023 Catching A, Te Yeh M, Bianco S, Capponi S, Andino R. A tradeoff between enterovirus A71 particle stability and cell entry. Nature Communications. 14: 7450. PMID 37978288 DOI: 10.1038/s41467-023-43029-0  0.387
2023 Andino R, Kirkegaard K, Macadam A, Racaniello VR, Rosenfeld AB. The Picornaviridae Family: Knowledge Gaps, Animal Models, Countermeasures, and Prototype Pathogens. The Journal of Infectious Diseases. 228: S427-S445. PMID 37849401 DOI: 10.1093/infdis/jiac426  0.8
2023 Aguilar Rangel M, Dolan PT, Taguwa S, Xiao Y, Andino R, Frydman J. High-resolution mapping reveals the mechanism and contribution of genome insertions and deletions to RNA virus evolution. Proceedings of the National Academy of Sciences of the United States of America. 120: e2304667120. PMID 37487061 DOI: 10.1073/pnas.2304667120  0.838
2023 Aviner R, Lidsky PV, Xiao Y, Tasseto M, Zhang L, McAlpine PL, Elias J, Frydman J, Andino R. SARS-CoV-2 Nsp1 regulates translation start site fidelity to promote infection. Biorxiv : the Preprint Server For Biology. PMID 37461541 DOI: 10.1101/2023.07.05.547902  0.65
2023 Arts PJ, Kelly JD, Midgley CM, Anglin K, Lu S, Abedi GR, Andino R, Bakker KM, Banman B, Boehm AB, Briggs-Hagen M, Brouwer AF, Davidson MC, Eisenberg MC, Garcia-Knight M, et al. Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage. Msphere. e0013223. PMID 37338211 DOI: 10.1128/msphere.00132-23  0.323
2023 Cable J, Denison MR, Kielian M, Jackson WT, Bartenschlager R, Ahola T, Mukhopadhyay S, Fremont DH, Kuhn RJ, Shannon A, Frazier MN, Yuen KY, Coyne CB, Wolthers KC, Ming GL, ... ... Andino R, et al. Positive-strand RNA viruses-a Keystone Symposia report. Annals of the New York Academy of Sciences. PMID 36697369 DOI: 10.1111/nyas.14957  0.457
2023 Yang J, Xiao Y, Lidsky PV, Wu CT, Bonser LR, Peng S, Garcia-Knight MA, Tassetto M, Chung CI, Li X, Nakayama T, Lee IT, Nayak JV, Ghias K, Hargett KL, ... ... Andino R, et al. Fluorogenic reporter enables identification of compounds that inhibit SARS-CoV-2. Nature Microbiology. 8: 121-134. PMID 36604514 DOI: 10.1038/s41564-022-01288-5  0.515
2022 Wu CT, Lidsky PV, Xiao Y, Cheng R, Lee IT, Nakayama T, Jiang S, He W, Demeter J, Knight MG, Turn RE, Rojas-Hernandez LS, Ye C, Chiem K, Shon J, ... ... Andino R, et al. SARS-CoV-2 replication in airway epithelia requires motile cilia and microvillar reprogramming. Cell. PMID 36580912 DOI: 10.1016/j.cell.2022.11.030  0.561
2022 Sadasivan J, Vlok M, Wang X, Nayak A, Andino R, Jan E. Targeting Nup358/RanBP2 by a viral protein disrupts stress granule formation. Plos Pathogens. 18: e1010598. PMID 36455064 DOI: 10.1371/journal.ppat.1010598  0.341
2022 Melo-Silva CR, Roman MI, Knudson CJ, Tang L, Xu RH, Tassetto M, Dolan P, Andino R, Sigal LJ. Interferon partly dictates a divergent transcriptional response in poxvirus-infected and bystander inflammatory monocytes. Cell Reports. 41: 111676. PMID 36417857 DOI: 10.1016/j.celrep.2022.111676  0.675
2022 Garcia-Knight M, Anglin K, Tassetto M, Lu S, Zhang A, Goldberg SA, Catching A, Davidson MC, Shak JR, Romero M, Pineda-Ramirez J, Diaz-Sanchez R, Rugart P, Donohue K, Massachi J, ... ... Andino R, et al. Infectious viral shedding of SARS-CoV-2 Delta following vaccination: A longitudinal cohort study. Plos Pathogens. 18: e1010802. PMID 36095030 DOI: 10.1371/journal.ppat.1010802  0.303
2022 Tassetto M, Garcia-Knight M, Anglin K, Lu S, Zhang A, Romero M, Pineda-Ramirez J, Sanchez RD, Donohue KC, Pfister K, Chan C, Saydah S, Briggs-Hagen M, Peluso MJ, Martin JN, ... Andino R, et al. Detection of Higher Cycle Threshold Values in Culturable SARS-CoV-2 Omicron BA.1 Sublineage Compared with Pre-Omicron Variant Specimens - San Francisco Bay Area, California, July 2021-March 2022. Mmwr. Morbidity and Mortality Weekly Report. 71: 1151-1154. PMID 36074732 DOI: 10.15585/mmwr.mm7136a3  0.367
2022 Wahid R, Mercer L, Gast C, De Leon T, Sáez-Llorens X, Fix A, Macadam A, Stephens L, Chumakov K, Smits SL, Murreddu M, Konopka-Anstadt JL, Steven Oberste M, Burns CC, Andino R, et al. Evaluating stability of attenuated Sabin and two novel type 2 oral poliovirus vaccines in children. Npj Vaccines. 7: 19. PMID 35149714 DOI: 10.1038/s41541-022-00437-5  0.319
2021 Xiao Y, Lidsky PV, Shirogane Y, Aviner R, Wu CT, Li W, Zheng W, Talbot D, Catching A, Doitsh G, Su W, Gekko CE, Nayak A, Ernst JD, Brodsky L, ... ... Andino R, et al. A defective viral genome strategy elicits broad protective immunity against respiratory viruses. Cell. PMID 34852237 DOI: 10.1016/j.cell.2021.11.023  0.761
2021 Aviner R, Li KH, Frydman J, Andino R. Author Correction: Cotranslational prolyl hydroxylation is essential for flavivirus biogenesis. Nature. PMID 34675396 DOI: 10.1038/s41586-021-04102-0  0.465
2021 Nakayama T, Lee IT, Jiang S, Matter MS, Yan CH, Overdevest JB, Wu CT, Goltsev Y, Shih LC, Liao CK, Zhu B, Bai Y, Lidsky P, Xiao Y, Zarabanda D, ... ... Andino R, et al. Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers. Cell Reports. Medicine. 100421. PMID 34604819 DOI: 10.1016/j.xcrm.2021.100421  0.502
2021 Shirogane Y, Rousseau E, Voznica J, Xiao Y, Su W, Catching A, Whitfield ZJ, Rouzine IM, Bianco S, Andino R. Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome. Plos Pathogens. 17: e1009277. PMID 34570820 DOI: 10.1371/journal.ppat.1009277  0.41
2021 Li X, Lidsky P, Xiao Y, Wu CT, Garcia-Knight M, Yang J, Nakayama T, Nayak JV, Jackson PK, Andino R, Shu X. Ethacridine inhibits SARS-CoV-2 by inactivating viral particles. Plos Pathogens. 17: e1009898. PMID 34478458 DOI: 10.1371/journal.ppat.1009898  0.49
2021 Sharov V, Rezelj VV, Galatenko VV, Titievsky A, Panov J, Chumakov K, Andino R, Vignuzzi M, Brodsky L. Intra and inter-cellular modeling of dynamic interaction between Zika virus and its naturally occurring defective viral genomes. Journal of Virology. JVI0097721. PMID 34468175 DOI: 10.1128/JVI.00977-21  0.432
2021 Aviner R, Li KH, Frydman J, Andino R. Cotranslational prolyl hydroxylation is essential for flavivirus biogenesis. Nature. PMID 34408324 DOI: 10.1038/s41586-021-03851-2  0.684
2021 Wu CT, Lidsky PV, Xiao Y, Lee IT, Cheng R, Nakayama T, Jiang S, Demeter J, Bevacqua RJ, Chang CA, Whitener RL, Stalder AK, Zhu B, Chen H, Goltsev Y, ... ... Andino R, et al. SARS-CoV-2 infects human pancreatic β cells and elicits β cell impairment. Cell Metabolism. PMID 34081912 DOI: 10.1016/j.cmet.2021.05.013  0.42
2021 Dolan PT, Taguwa S, Rangel MA, Acevedo A, Hagai T, Andino R, Frydman J. Principles of dengue virus evolvability derived from genotype-fitness maps in human and mosquito cells. Elife. 10. PMID 33491648 DOI: 10.7554/eLife.61921  0.815
2020 Li X, Lidsky P, Xiao Y, Wu CT, Garcia-Knight M, Yang J, Nakayama T, Nayak JV, Jackson PK, Andino R, Shu X. Ethacridine inhibits SARS-CoV-2 by inactivating viral particles in cellular models. Biorxiv : the Preprint Server For Biology. PMID 33140048 DOI: 10.1101/2020.10.28.359042  0.505
2020 Whitfield ZJ, Prasad AN, Ronk AJ, Kuzmin IV, Ilinykh PA, Andino R, Bukreyev A. Species-Specific Evolution of Ebola Virus during Replication in Human and Bat Cells. Cell Reports. 32: 108028. PMID 32814037 DOI: 10.1016/J.Celrep.2020.108028  0.562
2020 Yeh MT, Capponi S, Catching A, Bianco S, Andino R. Mapping Attenuation Determinants in Enterovirus-D68. Viruses. 12. PMID 32784424 DOI: 10.3390/V12080867  0.405
2020 Lidsky PV, Andino R. Epidemics as an adaptive driving force determining lifespan setpoints. Proceedings of the National Academy of Sciences of the United States of America. 117: 17937-17948. PMID 32651271 DOI: 10.1073/Pnas.1920988117  0.344
2020 Yeh MT, Bujaki E, Dolan PT, Smith M, Wahid R, Konz J, Weiner AJ, Bandyopadhyay AS, Van Damme P, De Coster I, Revets H, Macadam A, Andino R. Engineering the Live-Attenuated Polio Vaccine to Prevent Reversion to Virulence. Cell Host & Microbe. PMID 32330425 DOI: 10.1016/J.Chom.2020.04.003  0.683
2019 Tassetto M, Kunitomi M, Whitfield ZJ, Dolan PT, Sánchez-Vargas I, Garcia-Knight M, Ribiero I, Chen T, Olson KE, Andino R. Control of RNA viruses in mosquito cells through the acquisition of vDNA and endogenous viral elements. Elife. 8. PMID 31621580 DOI: 10.7554/Elife.41244  0.793
2019 Diep J, Ooi YS, Wilkinson AW, Peters CE, Foy E, Johnson JR, Zengel J, Ding S, Weng KF, Laufman O, Jang G, Xu J, Young T, Verschueren E, Kobluk KJ, ... ... Andino R, et al. Enterovirus pathogenesis requires the host methyltransferase SETD3. Nature Microbiology. PMID 31527793 DOI: 10.1038/S41564-019-0551-1  0.652
2019 Laufman O, Perrino J, Andino R. Viral Generated Inter-Organelle Contacts Redirect Lipid Flux for Genome Replication. Cell. PMID 31204099 DOI: 10.1016/J.Cell.2019.05.030  0.498
2019 Taguwa S, Yeh MT, Rainbolt TK, Nayak A, Shao H, Gestwicki JE, Andino R, Frydman J. Zika Virus Dependence on Host Hsp70 Provides a Protective Strategy against Infection and Disease. Cell Reports. 26: 906-920.e3. PMID 30673613 DOI: 10.1016/J.Celrep.2018.12.095  0.674
2019 Tassetto M, Kunitomi M, Whitfield ZJ, Dolan PT, Sánchez-Vargas I, Garcia-Knight M, Ribiero I, Chen T, Olson KE, Andino R. Author response: Control of RNA viruses in mosquito cells through the acquisition of vDNA and endogenous viral elements Elife. DOI: 10.7554/Elife.41244.026  0.773
2018 Shah PS, Link N, Jang GM, Sharp PP, Zhu T, Swaney DL, Johnson JR, Von Dollen J, Ramage HR, Satkamp L, Newton B, Hüttenhain R, Petit MJ, Baum T, Everitt A, ... ... Andino R, et al. Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis. Cell. 175: 1931-1945.e18. PMID 30550790 DOI: 10.1016/J.Cell.2018.11.028  0.733
2018 Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R. A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability. Cell Host & Microbe. 24: 542-557.e9. PMID 30308158 DOI: 10.1016/J.Chom.2018.09.006  0.69
2018 Dolan PT, Whitfield ZJ, Andino R. Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution. Annual Review of Virology. PMID 30048219 DOI: 10.1146/Annurev-Virology-101416-041718  0.789
2018 Geller R, Pechmann S, Acevedo A, Andino R, Frydman J. Hsp90 shapes protein and RNA evolution to balance trade-offs between protein stability and aggregation. Nature Communications. 9: 1781. PMID 29725062 DOI: 10.1038/S41467-018-04203-X  0.783
2018 Dolan PT, Whitfield ZJ, Andino R. Mapping the Evolutionary Potential of RNA Viruses. Cell Host & Microbe. 23: 435-446. PMID 29649440 DOI: 10.1016/J.Chom.2018.03.012  0.773
2017 Whitfield ZJ, Dolan PT, Kunitomi M, Tassetto M, Seetin MG, Oh S, Heiner C, Paxinos E, Andino R. The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti Genome. Current Biology : Cb. PMID 29129531 DOI: 10.1016/J.Cub.2017.09.067  0.772
2017 Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R. RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host & Microbe. 22: 420. PMID 28910639 DOI: 10.1016/J.Chom.2017.08.006  0.851
2017 Xiao Y, Dolan PT, Goldstein EF, Li M, Farkov M, Brodsky L, Andino R. Poliovirus intrahost evolution is required to overcome tissue-specific innate immune responses. Nature Communications. 8: 375. PMID 28851882 DOI: 10.1038/S41467-017-00354-5  0.759
2017 Andino R, Diamond M. Editorial overview: Viral pathogenesis: Strategies for virus survival - Acute versus persistent infections. Current Opinion in Virology. 23: v. PMID 28622998 DOI: 10.1016/J.Coviro.2017.06.002  0.46
2017 Lidsky PV, Andino R, Rouzine IM. Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections. Current Opinion in Virology. 23: 120-124. PMID 28551476 DOI: 10.1016/J.Coviro.2017.05.001  0.435
2017 Tassetto M, Kunitomi M, Andino R. Circulating Immune Cells Mediate a Systemic RNAi-Based Adaptive Antiviral Response in Drosophila. Cell. 169: 314-325.e13. PMID 28388413 DOI: 10.1016/J.Cell.2017.03.033  0.452
2017 Shen L, Chen CY, Huang D, Wang R, Zhang M, Qian L, Zhu Y, Zhang AZ, Yang E, Qaqish A, Chumakov K, Kouiavskaia D, Vignuzzi M, Nathanson N, Macadam AJ, ... Andino R, et al. Pathogenic events in a Nonhuman Primate Model of Oral Poliovirus Infection Leading to Paralytic Poliomyelitis. Journal of Virology. PMID 28356537 DOI: 10.1128/Jvi.02310-16  0.489
2017 Stern A, Yeh MT, Zinger T, Smith M, Wright C, Ling G, Nielsen R, Macadam A, Andino R. The Evolutionary Pathway to Virulence of an RNA Virus. Cell. 169: 35-46.e19. PMID 28340348 DOI: 10.1016/J.Cell.2017.03.013  0.402
2017 Menéndez-Arias L, Andino R. VIRAL POLYMERASES. Virus Research. PMID 28188807 DOI: 10.1016/j.virusres.2017.02.003  0.458
2016 De Maio FA, Risso G, Iglesias NG, Shah P, Pozzi B, Gebhard LG, Mammi P, Mancini E, Yanovsky MJ, Andino R, Krogan N, Srebrow A, Gamarnik AV. The Dengue Virus NS5 Protein Intrudes in the Cellular Spliceosome and Modulates Splicing. Plos Pathogens. 12: e1005841. PMID 27575636 DOI: 10.1371/Journal.Ppat.1005841  0.776
2016 Whitfield ZJ, Andino R. Characterization of Viral Populations using Circular Sequencing. Journal of Virology. PMID 27440878 DOI: 10.1128/Jvi.00804-14  0.425
2016 Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R. RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host & Microbe. 19: 493-503. PMID 27078068 DOI: 10.1016/J.Chom.2016.03.009  0.804
2016 Stern A, Andino R. Viral Evolution: It is All About Mutations Viral Pathogenesis: From Basics to Systems Biology: Third Edition. 233-240. DOI: 10.1016/B978-0-12-800964-2.00017-3  0.38
2015 Taguwa S, Maringer K, Li X, Bernal-Rubio D, Rauch JN, Gestwicki JE, Andino R, Fernandez-Sesma A, Frydman J. Defining Hsp70 Subnetworks in Dengue Virus Replication Reveals Key Vulnerability in Flavivirus Infection. Cell. PMID 26582131 DOI: 10.1016/J.Cell.2015.10.046  0.735
2015 Andino R, Domingo E. Viral quasispecies. Virology. 479: 46-51. PMID 25824477 DOI: 10.1016/j.virol.2015.03.022  0.422
2015 Schulte MB, Draghi JA, Plotkin JB, Andino R. Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses. Elife. 4. PMID 25635405 DOI: 10.7554/Elife.03753  0.554
2014 Gitlin L, Hagai T, LaBarbera A, Solovey M, Andino R. Rapid evolution of virus sequences in intrinsically disordered protein regions. Plos Pathogens. 10: e1004529. PMID 25502394 DOI: 10.1371/Journal.Ppat.1004529  0.685
2014 Korboukh VK, Lee CA, Acevedo A, Vignuzzi M, Xiao Y, Arnold JJ, Hemperly S, Graci JD, August A, Andino R, Cameron CE. RNA virus population diversity, an optimum for maximal fitness and virulence. The Journal of Biological Chemistry. 289: 29531-44. PMID 25213864 DOI: 10.1074/Jbc.M114.592303  0.859
2014 Stern A, Bianco S, Yeh MT, Wright C, Butcher K, Tang C, Nielsen R, Andino R. Costs and benefits of mutational robustness in RNA viruses. Cell Reports. 8: 1026-36. PMID 25127138 DOI: 10.1016/J.Celrep.2014.07.011  0.431
2014 Acevedo A, Andino R. Library preparation for highly accurate population sequencing of RNA viruses. Nature Protocols. 9: 1760-9. PMID 24967624 DOI: 10.1038/Nprot.2014.118  0.826
2014 Hagai T, Azia A, Babu MM, Andino R. Use of host-like peptide motifs in viral proteins is a prevalent strategy in host-virus interactions. Cell Reports. 7: 1729-39. PMID 24882001 DOI: 10.1016/J.Celrep.2014.04.052  0.521
2014 Schulte MB, Andino R. Single-cell analysis uncovers extensive biological noise in poliovirus replication. Journal of Virology. 88: 6205-12. PMID 24648454 DOI: 10.1128/Jvi.03539-13  0.456
2014 Acevedo A, Brodsky L, Andino R. Mutational and fitness landscapes of an RNA virus revealed through population sequencing. Nature. 505: 686-90. PMID 24284629 DOI: 10.1038/Nature12861  0.838
2014 Schulte MB, Draghi JA, Plotkin JB, Andino R. Author response: Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses Elife. DOI: 10.7554/Elife.03753.019  0.491
2014 Hagai T, Andino R, Babu MM, Azia A. Extensive use of Host-Mimicking Motifs Supports Complex Regulation of Viral Proteins Biophysical Journal. 106: 484a. DOI: 10.1016/J.Bpj.2013.11.2735  0.461
2013 Burrill CP, Andino R. RNA structure analysis of viruses using SHAPE. Current Protocols in Microbiology. 30: Unit 15H.3.. PMID 24510890 DOI: 10.1002/9780471729259.Mc15H03S30  0.814
2013 Lou DI, Hussmann JA, McBee RM, Acevedo A, Andino R, Press WH, Sawyer SL. High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing. Proceedings of the National Academy of Sciences of the United States of America. 110: 19872-7. PMID 24243955 DOI: 10.1073/Pnas.1319590110  0.747
2013 Flenniken ML, Andino R. Non-specific dsRNA-mediated antiviral response in the honey bee. Plos One. 8: e77263. PMID 24130869 DOI: 10.1371/Journal.Pone.0077263  0.568
2013 Burrill CP, Westesson O, Schulte MB, Strings VR, Segal M, Andino R. Global RNA structure analysis of poliovirus identifies a conserved RNA structure involved in viral replication and infectivity. Journal of Virology. 87: 11670-83. PMID 23966409 DOI: 10.1128/Jvi.01560-13  0.809
2013 Burrill CP, Strings VR, Andino R. Poliovirus: generation, quantification, propagation, purification, and storage. Current Protocols in Microbiology. Unit 15H.1. PMID 23686830 DOI: 10.1002/9780471729259.Mc15H01S29  0.819
2013 Burrill CP, Strings VR, Schulte MB, Andino R. Poliovirus: generation and characterization of mutants. Current Protocols in Microbiology. Unit 15H.2. PMID 23686829 DOI: 10.1002/9780471729259.Mc15H02S29  0.826
2013 Nayak A, Tassetto M, Kunitomi M, Andino R. RNA interference-mediated intrinsic antiviral immunity in invertebrates. Current Topics in Microbiology and Immunology. 371: 183-200. PMID 23686236 DOI: 10.1007/978-3-642-37765-5_7  0.482
2013 Lauring AS, Frydman J, Andino R. The role of mutational robustness in RNA virus evolution. Nature Reviews. Microbiology. 11: 327-36. PMID 23524517 DOI: 10.1038/Nrmicro3003  0.723
2013 Geller R, Andino R, Frydman J. Hsp90 inhibitors exhibit resistance-free antiviral activity against respiratory syncytial virus. Plos One. 8: e56762. PMID 23460813 DOI: 10.1371/Journal.Pone.0056762  0.67
2013 Runckel C, Westesson O, Andino R, DeRisi JL. Identification and manipulation of the molecular determinants influencing poliovirus recombination. Plos Pathogens. 9: e1003164. PMID 23408891 DOI: 10.1371/Journal.Ppat.1003164  0.472
2012 Lauring AS, Acevedo A, Cooper SB, Andino R. Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus. Cell Host & Microbe. 12: 623-32. PMID 23159052 DOI: 10.1016/J.Chom.2012.10.008  0.848
2012 Vignuzzi M, Andino R. Closing the gap: the challenges in converging theoretical, computational, experimental and real-life studies in virus evolution. Current Opinion in Virology. 2: 515-8. PMID 23025914 DOI: 10.1016/J.Coviro.2012.09.008  0.367
2011 Runckel C, Flenniken ML, Engel JC, Ruby JG, Ganem D, Andino R, DeRisi JL. Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. Plos One. 6: e20656. PMID 21687739 DOI: 10.1371/Journal.Pone.0020656  0.494
2011 Zemla AT, Lang DM, Kostova T, Andino R, Ecale Zhou CL. StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase. Bmc Bioinformatics. 12: 226. PMID 21635786 DOI: 10.1186/1471-2105-12-226  0.364
2011 Nayak A, Andino R. Slicer activity in Drosophila melanogaster S2 extract. Methods in Molecular Biology (Clifton, N.J.). 721: 231-44. PMID 21431689 DOI: 10.1007/978-1-61779-037-9_14  0.315
2011 Lauring AS, Andino R. Exploring the fitness landscape of an RNA virus by using a universal barcode microarray. Journal of Virology. 85: 3780-91. PMID 21289109 DOI: 10.1128/Jvi.02217-10  0.59
2010 Lauring AS, Andino R. Quasispecies theory and the behavior of RNA viruses. Plos Pathogens. 6: e1001005. PMID 20661479 DOI: 10.1371/Journal.Ppat.1001005  0.545
2010 Vogt DA, Andino R. An RNA element at the 5'-end of the poliovirus genome functions as a general promoter for RNA synthesis. Plos Pathogens. 6: e1000936. PMID 20532207 DOI: 10.1371/Journal.Ppat.1000936  0.513
2010 Lauring AS, Jones JO, Andino R. Rationalizing the development of live attenuated virus vaccines. Nature Biotechnology. 28: 573-9. PMID 20531338 DOI: 10.1038/Nbt.1635  0.413
2010 Nayak A, Berry B, Tassetto M, Kunitomi M, Acevedo A, Deng C, Krutchinsky A, Gross J, Antoniewski C, Andino R. Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in Drosophila. Nature Structural & Molecular Biology. 17: 547-54. PMID 20400949 DOI: 10.1038/Nsmb.1810  0.822
2009 Webster DR, Hekele AG, Lauring AS, Fischer KF, Li H, Andino R, DeRisi JL. An enhanced single base extension technique for the analysis of complex viral populations. Plos One. 4: e7453. PMID 19834618 DOI: 10.1371/Journal.Pone.0007453  0.315
2009 Saleh MC, Tassetto M, van Rij RP, Goic B, Gausson V, Berry B, Jacquier C, Antoniewski C, Andino R. Antiviral immunity in Drosophila requires systemic RNA interference spread. Nature. 458: 346-50. PMID 19204732 DOI: 10.1038/Nature07712  0.538
2008 Ylösmäki E, Hakkarainen T, Hemminki A, Visakorpi T, Andino R, Saksela K. Generation of a conditionally replicating adenovirus based on targeted destruction of E1A mRNA by a cell type-specific MicroRNA. Journal of Virology. 82: 11009-15. PMID 18799589 DOI: 10.1128/Jvi.01608-08  0.353
2008 Barnes D, Kunitomi M, Vignuzzi M, Saksela K, Andino R. Harnessing endogenous miRNAs to control virus tissue tropism as a strategy for developing attenuated virus vaccines. Cell Host & Microbe. 4: 239-48. PMID 18779050 DOI: 10.1016/J.Chom.2008.08.003  0.409
2008 Stone JK, Rijnbrand R, Stein DA, Ma Y, Yang Y, Iversen PL, Andino R. A morpholino oligomer targeting highly conserved internal ribosome entry site sequence is able to inhibit multiple species of picornavirus. Antimicrobial Agents and Chemotherapy. 52: 1970-81. PMID 18347107 DOI: 10.1128/Aac.00011-08  0.694
2008 Vignuzzi M, Wendt E, Andino R. Engineering attenuated virus vaccines by controlling replication fidelity. Nature Medicine. 14: 154-61. PMID 18246077 DOI: 10.1038/Nm1726  0.392
2008 Andino R, Vignuzzi M, Burrill C, Wendt E. Neurovirulence and the genetic structure of the virus quasispecies Bmc Proceedings. 2. DOI: 10.1186/1753-6561-2-s1-s1  0.802
2008 Van Rij RP, Andino R. The Complex Interactions of Viruses and the RNAi Machinery: A Driving Force in Viral Evolution Origin and Evolution of Viruses. 161-181. DOI: 10.1016/B978-0-12-374153-0.00007-2  0.424
2007 Beske O, Reichelt M, Taylor MP, Kirkegaard K, Andino R. Poliovirus infection blocks ERGIC-to-Golgi trafficking and induces microtubule-dependent disruption of the Golgi complex. Journal of Cell Science. 120: 3207-18. PMID 17711878 DOI: 10.1242/Jcs.03483  0.787
2007 Geller R, Vignuzzi M, Andino R, Frydman J. Evolutionary constraints on chaperone-mediated folding provide an antiviral approach refractory to development of drug resistance. Genes & Development. 21: 195-205. PMID 17234885 DOI: 10.1101/Gad.1505307  0.696
2006 van Rij RP, Saleh MC, Berry B, Foo C, Houk A, Antoniewski C, Andino R. The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster. Genes & Development. 20: 2985-95. PMID 17079687 DOI: 10.1101/Gad.1482006  0.574
2006 Saleh MC, van Rij RP, Hekele A, Gillis A, Foley E, O'Farrell PH, Andino R. The endocytic pathway mediates cell entry of dsRNA to induce RNAi silencing. Nature Cell Biology. 8: 793-802. PMID 16862146 DOI: 10.1038/Ncb1439  0.468
2006 Gamarnik AV, Andino R. Exploring RNA virus replication in Xenopus oocytes. Methods in Molecular Biology (Clifton, N.J.). 322: 367-78. PMID 16739737 DOI: 10.1007/978-1-59745-000-3_26  0.58
2006 van Ooij MJ, Polacek C, Glaudemans DH, Kuijpers J, van Kuppeveld FJ, Andino R, Agol VI, Melchers WJ. Polyadenylation of genomic RNA and initiation of antigenomic RNA in a positive-strand RNA virus are controlled by the same cis-element. Nucleic Acids Research. 34: 2953-65. PMID 16738134 DOI: 10.1093/nar/gkl349  0.456
2006 van Rij RP, Andino R. The silent treatment: RNAi as a defense against virus infection in mammals. Trends in Biotechnology. 24: 186-93. PMID 16503061 DOI: 10.1016/J.Tibtech.2006.02.006  0.611
2006 van Ooij MJ, Vogt DA, Paul A, Castro C, Kuijpers J, van Kuppeveld FJ, Cameron CE, Wimmer E, Andino R, Melchers WJ. Structural and functional characterization of the coxsackievirus B3 CRE(2C): role of CRE(2C) in negative- and positive-strand RNA synthesis. The Journal of General Virology. 87: 103-13. PMID 16361422 DOI: 10.1099/Vir.0.81297-0  0.484
2006 Vignuzzi M, Stone JK, Arnold JJ, Cameron CE, Andino R. Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population. Nature. 439: 344-8. PMID 16327776 DOI: 10.1038/Nature04388  0.759
2005 Arnold JJ, Vignuzzi M, Stone JK, Andino R, Cameron CE. Remote site control of an active site fidelity checkpoint in a viral RNA-dependent RNA polymerase. The Journal of Biological Chemistry. 280: 25706-16. PMID 15878882 DOI: 10.1074/Jbc.M503444200  0.729
2005 Vignuzzi M, Stone JK, Andino R. Ribavirin and lethal mutagenesis of poliovirus: molecular mechanisms, resistance and biological implications. Virus Research. 107: 173-81. PMID 15649563 DOI: 10.1016/J.Virusres.2004.11.007  0.792
2005 Gitlin L, Stone JK, Andino R. Poliovirus escape from RNA interference: short interfering RNA-target recognition and implications for therapeutic approaches. Journal of Virology. 79: 1027-35. PMID 15613331 DOI: 10.1128/Jvi.79.2.1027-1035.2005  0.809
2004 Du Z, Yu J, Chen Y, Andino R, James TL. Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2. The Journal of Biological Chemistry. 279: 48126-34. PMID 15331611 DOI: 10.1074/Jbc.M405371200  0.352
2004 Du Z, Ulyanov NB, Yu J, Andino R, James TL. NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA. Biochemistry. 43: 5757-71. PMID 15134450 DOI: 10.1021/Bi0363228  0.387
2004 Saleh MC, Van Rij RP, Andino R. RNA silencing in viral infections: insights from poliovirus. Virus Research. 102: 11-7. PMID 15068875 DOI: 10.1016/J.Virusres.2004.01.010  0.567
2004 Crotty S, Andino R. Poliovirus vaccine strains as mucosal vaccine vectors and their potential use to develop an AIDS vaccine. Advanced Drug Delivery Reviews. 56: 835-52. PMID 15063593 DOI: 10.1016/J.Addr.2003.10.042  0.574
2004 Crotty S, Saleh MC, Gitlin L, Beske O, Andino R. The poliovirus replication machinery can escape inhibition by an antiviral drug that targets a host cell protein. Journal of Virology. 78: 3378-86. PMID 15016860 DOI: 10.1128/Jvi.78.7.3378-3386.2004  0.838
2003 Goodfellow IG, Polacek C, Andino R, Evans DJ. The poliovirus 2C cis-acting replication element-mediated uridylylation of VPg is not required for synthesis of negative-sense genomes. The Journal of General Virology. 84: 2359-63. PMID 12917456 DOI: 10.1099/Vir.0.19132-0  0.464
2003 Gitlin L, Andino R. Nucleic acid-based immune system: the antiviral potential of mammalian RNA silencing. Journal of Virology. 77: 7159-65. PMID 12805414 DOI: 10.1128/Jvi.77.13.7159-7165.2003  0.709
2003 Andino R. RNAi puts a lid on virus replication. Nature Biotechnology. 21: 629-30. PMID 12776148 DOI: 10.1038/Nbt0603-629  0.54
2003 Du Z, Yu J, Andino R, James TL. Extending the family of UNCG-like tetraloop motifs: NMR structure of a CACG tetraloop from coxsackievirus B3. Biochemistry. 42: 4373-83. PMID 12693932 DOI: 10.1021/Bi027314E  0.385
2003 Crotty S, Gohara D, Gilligan DK, Karelsky S, Cameron CE, Andino R. Manganese-dependent polioviruses caused by mutations within the viral polymerase. Journal of Virology. 77: 5378-88. PMID 12692240 DOI: 10.1128/Jvi.77.9.5378-5388.2003  0.711
2003 Gitlin L, Karelsky S, Andino R. Erratum: corrigendum: Short interfering RNA confers intracellular antiviral immunity in human cells Nature. 423: 197-197. DOI: 10.1038/Nature01562  0.641
2003 Crotty S, Andino R. Virus-based vectors for gene expression in mammalian cells: Poliovirus New Comprehensive Biochemistry. 38: 169-187. DOI: 10.1016/S0167-7306(03)38011-1  0.56
2002 Crotty S, Andino R. Implications of high RNA virus mutation rates: lethal mutagenesis and the antiviral drug ribavirin. Microbes and Infection / Institut Pasteur. 4: 1301-7. PMID 12443894 DOI: 10.1016/S1286-4579(02)00008-4  0.726
2002 van Kuppeveld FJ, de Jong A, Dijkman HB, Andino R, Melchers WJ. Studies towards the potential of poliovirus as a vector for the expression of HPV 16 virus-like-particles. Fems Immunology and Medical Microbiology. 34: 201-8. PMID 12423772 DOI: 10.1111/J.1574-695X.2002.Tb00625.X  0.324
2002 Gitlin L, Karelsky S, Andino R. Short interfering RNA confers intracellular antiviral immunity in human cells. Nature. 418: 430-4. PMID 12087357 DOI: 10.1038/Nature00873  0.76
2002 Crotty S, Hix L, Sigal LJ, Andino R. Poliovirus pathogenesis in a new poliovirus receptor transgenic mouse model: age-dependent paralysis and a mucosal route of infection. The Journal of General Virology. 83: 1707-20. PMID 12075090 DOI: 10.1099/0022-1317-83-7-1707  0.533
2002 Crotty S, Cameron C, Andino R. Ribavirin's antiviral mechanism of action: lethal mutagenesis? Journal of Molecular Medicine (Berlin, Germany). 80: 86-95. PMID 11907645 DOI: 10.1007/S00109-001-0308-0  0.71
2001 Schneider R, Agol VI, Andino R, Bayard F, Cavener DR, Chappell SA, Chen JJ, Darlix JL, Dasgupta A, Donzé O, Duncan R, Elroy-Stein O, Farabaugh PJ, Filipowicz W, Gale M, et al. New ways of initiating translation in eukaryotes. Molecular and Cellular Biology. 21: 8238-46. PMID 11710333 DOI: 10.1128/Mcb.21.23.8238-8246.2001  0.675
2001 Herold J, Andino R. Poliovirus RNA replication requires genome circularization through a protein-protein bridge Molecular Cell. 7: 581-591. PMID 11463383 DOI: 10.1016/S1097-2765(01)00205-2  0.54
2001 Crotty S, Miller CJ, Lohman BL, Neagu MR, Compton L, Lu D, Lü FX, Fritts L, Lifson JD, Andino R. Protection against simian immunodeficiency virus vaginal challenge by using Sabin poliovirus vectors. Journal of Virology. 75: 7435-52. PMID 11462016 DOI: 10.1128/Jvi.75.16.7435-7452.2001  0.535
2001 Crotty S, Cameron CE, Andino R. RNA virus error catastrophe: direct molecular test by using ribavirin. Proceedings of the National Academy of Sciences of the United States of America. 98: 6895-900. PMID 11371613 DOI: 10.1073/Pnas.111085598  0.731
2001 Mandl S, Hix L, Andino R. Preexisting immunity to poliovirus does not impair the efficacy of recombinant poliovirus vaccine vectors Journal of Virology. 75: 622-627. PMID 11134275 DOI: 10.1128/Jvi.75.2.622-627.2001  0.324
2000 Crotty S, Maag D, Arnold JJ, Zhong W, Lau JY, Hong Z, Andino R, Cameron CE. The broad-spectrum antiviral ribonucleoside ribavirin is an RNA virus mutagen. Nature Medicine. 6: 1375-9. PMID 11100123 DOI: 10.1038/82191  0.713
2000 Gamarnik AV, Böddeker N, Andino R. Translation and replication of human rhinovirus type 14 and mengovirus in Xenopus oocytes. Journal of Virology. 74: 11983-7. PMID 11090201 DOI: 10.1128/Jvi.74.24.11983-11987.2000  0.504
2000 McAllister A, Arbetman AE, Mandl S, Pena-Rossi C, Andino R. Recombinant yellow fever viruses are effective therapeutic vaccines for treatment of murine experimental solid tumors and pulmonary metastases Journal of Virology. 74: 9197-9205. PMID 10982366 DOI: 10.1128/Jvi.74.19.9197-9205.2000  0.39
2000 Herold J, Andino R. Poliovirus requires a precise 5' end for efficient positive-strand RNA synthesis Journal of Virology. 74: 6394-6400. PMID 10864650 DOI: 10.1128/Jvi.74.14.6394-6400.2000  0.519
2000 Gohara DW, Crotty S, Arnold JJ, Yoder JD, Andino R, Cameron CE. Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B. The Journal of Biological Chemistry. 275: 25523-32. PMID 10827187 DOI: 10.1074/Jbc.M002671200  0.644
2000 Gamarnik AV, Andino R. Interactions of viral protein 3CD and poly(rC) binding protein with the 5' untranslated region of the poliovirus genome Journal of Virology. 74: 2219-2226. PMID 10666252 DOI: 10.1128/Jvi.74.5.2219-2226.2000  0.47
1999 Silvera D, Gamarnik AV, Andino R. The N-terminal K homology domain of the poly(rC)-binding protein is a major determinant for binding to the poliovirus 5'-untranslated region and acts as an inhibitor of viral translation. The Journal of Biological Chemistry. 274: 38163-70. PMID 10608888 DOI: 10.1074/Jbc.274.53.38163  0.74
1999 Crotty S, Lohman BL, Lü FX, Tang S, Miller CJ, Andino R. Mucosal immunization of cynomolgus macaques with two serotypes of live poliovirus vectors expressing simian immunodeficiency virus antigens: stimulation of humoral, mucosal, and cellular immunity. Journal of Virology. 73: 9485-95. PMID 10516057 DOI: 10.1128/Jvi.73.11.9485-9495.1999  0.576
1999 Andino R, Böddeker N, Silvera D, Gamarnik AV. Intracellular determinants of picornavirus replication. Trends in Microbiology. 7: 76-82. PMID 10081085 DOI: 10.1016/S0966-842X(98)01446-2  0.756
1999 Sigal LJ, Crotty S, Andino R, Rock KL. Cytotoxic T-cell immunity to virus-infected non-haematopoietic cells requires presentation of exogenous antigen. Nature. 398: 77-80. PMID 10078533 DOI: 10.1038/18038  0.578
1998 Gamarnik AV, Andino R. Switch from translation to RNA replication in a positive-stranded RNA virus Genes and Development. 12: 2293-2304. PMID 9694795 DOI: 10.1101/Gad.12.15.2293  0.544
1998 Mandl S, Sigal LJ, Rock KL, Andino R. Poliovirus vaccine vectors elicit antigen-specific cytotoxic T cells and protect mice against lethal challenge with malignant melanoma cells expressing a model antigen Proceedings of the National Academy of Sciences of the United States of America. 95: 8216-8221. PMID 9653167 DOI: 10.1073/Pnas.95.14.8216  0.377
1997 Tang S, van Rij R, Silvera D, Andino R. Toward a poliovirus-based simian immunodeficiency virus vaccine: correlation between genetic stability and immunogenicity. Journal of Virology. 71: 7841-50. PMID 9311872 DOI: 10.1128/Jvi.71.10.7841-7850.1997  0.738
1997 Gamarnik AV, Andino R. Two functional complexes formed by KH domain containing proteins with the 5' noncoding region of poliovirus RNA Rna. 3: 882-892. PMID 9257647  0.335
1996 Gamarnik AV, Andino R. Replication of poliovirus in Xenopus oocytes requires two human factors Embo Journal. 15: 5988-5998. PMID 8918476  0.45
1996 Yimn TJ, Tang S, Andino R. Poliovirus recombinants expressing hepatitis B virus antigens elicited a humoral immune response in susceptible mice Virology. 218: 61-70. PMID 8615042 DOI: 10.1006/Viro.1996.0166  0.441
1994 Andino R, Silvera D, Suggett SD, Achacoso PL, Miller CJ, Baltimore D, Feinberg MB. Engineering poliovirus as a vaccine vector for the expression of diverse antigens. Science (New York, N.Y.). 265: 1448-51. PMID 8073288 DOI: 10.1126/Science.8073288  0.747
1994 Chen BK, Saksela K, Andino R, Baltimore D. Distinct modes of human immunodeficiency virus type 1 proviral latency revealed by superinfection of nonproductively infected cell lines with recombinant luciferase-encoding viruses Journal of Virology. 68: 654-660. PMID 7507183 DOI: 10.1128/Jvi.68.2.654-660.1994  0.55
1993 Andino R, Rieckhof GE, Achacoso PL, Baltimore D. Poliovirus RNA synthesis utilizes an RNP complex formed around the 5'-end of viral RNA. The Embo Journal. 12: 3587-98. PMID 8253083  0.408
1991 Pomerantz RJ, Feinberg MB, Andino R, Baltimore D. The long terminal repeat is not a major determinant of the cellular tropism of human immunodeficiency virus type 1 Journal of Virology. 65: 1041-1045. PMID 1987367 DOI: 10.1128/Jvi.65.2.1041-1045.1991  0.521
1990 Andino R, Rieckhof GE, Baltimore D. A functional ribonucleoprotein complex forms around the 5' end of poliovirus RNA. Cell. 63: 369-80. PMID 2170027 DOI: 10.1016/0092-8674(90)90170-J  0.608
1990 Andino R, Rieckhof GE, Trono D, Baltimore D. Substitutions in the protease (3Cpro) gene of poliovirus can suppress a mutation in the 5' noncoding region. Journal of Virology. 64: 607-12. PMID 2153227 DOI: 10.1128/Jvi.64.2.607-612.1990  0.552
1988 Trono D, Andino R, Baltimore D. An RNA sequence of hundreds of nucleotides at the 5' end of poliovirus RNA is involved in allowing viral protein synthesis Journal of Virology. 62: 2291-2299. PMID 2836612 DOI: 10.1128/Jvi.62.7.2291-2299.1988  0.672
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