Lisa K. Johansen, Ph.D. - Related publications

Affiliations: 
2000 University of Alabama, Birmingham, Birmingham, AL, United States 
Area:
Molecular Biology, Microbiology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Zhu P, Kou M, C Y L, Zhang S, Lv R, Zhongqiang X, M D Y, A C Z. Genome sequencing of Ciboria shiraiana provides insights into the pathogenic mechanisms of hypertrophy sorosis scleroteniosis. Molecular Plant-Microbe Interactions : Mpmi. PMID 33021883 DOI: 10.1094/MPMI-07-20-0201-R   
2020 Tirwa RK, Najar IN, Thakur N, Chaurasia LK, Tamang B. Draft genome sequence of Lactobacillus plantarum strain DMR17 isolated from homemade cow dahi of Sikkim Himalayan region: an evaluation of lactate fermentation and secondary metabolism. Archives of Microbiology. PMID 32926196 DOI: 10.1007/s00203-020-02023-6   
2020 Cunha MDP, Ioshino RS, Costa-da-Silva AL, Petersen V, Capurro ML, Zanotto PMA. A Metagenomic Approach Identified a Novel Phasi Charoen-Like Virus Coinfecting a Chikungunya Virus-Infected Aedes aegypti Mosquito in Brazil. Microbiology Resource Announcements. 9. PMID 32732240 DOI: 10.1128/MRA.01572-19   
2020 Ruiz-García AB, Candresse T, Canales C, Morán F, Machado de Oliveira C, Bertolini E, Olmos A. Molecular Characterization of the Complete Coding Sequence of Olive Leaf Yellowing-Associated Virus. Plants (Basel, Switzerland). 9. PMID 32992518 DOI: 10.3390/plants9101272   
2020 Hebeler-Barbosa F, Wolf IR, Valente GT, Mello FCDA, Lampe E, Pardini MIMC, Grotto RMT. A New Method for Next-Generation Sequencing of the Full Hepatitis B Virus Genome from A Clinical Specimen: Impact for Virus Genotyping. Microorganisms. 8. PMID 32932752 DOI: 10.3390/microorganisms8091391   
2020 Ferreira LC, Maul JE, Viana MVC, de Sousa TJ, de Carvalho Azevedo VA, Roberts DP, de Souza JT. Complete genome sequence of the biocontrol agent Serratia marcescens strain N4-5 uncovers an assembly artefact. Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. PMID 32965626 DOI: 10.1007/s42770-020-00382-2   
2020 Li J, Wang H, Mao L, Yu H, Yu X, Sun Z, Qian X, Cheng S, Chen S, Chen J, Pan J, Shi J, Wang X. Rapid genomic characterization of SARS-CoV-2 viruses from clinical specimens using nanopore sequencing. Scientific Reports. 10: 17492. PMID 33060796 DOI: 10.1038/s41598-020-74656-y   
2020 Mannala GK, Rupp M, Ghosh H, Hain T, Domann E, Alt V. Complete Genome Sequence of Staphylococcus aureus EDCC 5398, a Clinical Isolate from Implant-Associated Bone Infection. Microbiology Resource Announcements. 9. PMID 33093052 DOI: 10.1128/MRA.01136-20   
2020 Wright BW, Ruan J, Molloy MP, Jaschke PR. Genome Modularization Reveals Overlapped Gene Topology Is Necessary for Efficient Viral Reproduction. Acs Synthetic Biology. PMID 33044064 DOI: 10.1021/acssynbio.0c00323   
2020 Zhao S, Luo J, Zeng X, Li K, Yuan R, Zhu L, Li X, Wu G, Yan X. Rolling Circle Amplification (RCA)-Mediated Genome-Wide ihpRNAi Mutant Library Construction in . International Journal of Molecular Sciences. 21. PMID 33008068 DOI: 10.3390/ijms21197243   
2020 Rossi A, Treu L, Toppo S, Zschach H, Campanaro S, Dutilh BE. Evolutionary Study of the Crassphage Virus at Gene Level. Viruses. 12. PMID 32957679 DOI: 10.3390/v12091035   
2020 Nguyen DT, Wu B, Xiao S, Hao W. Evolution of a record-setting AT-rich genome: indel mutation, recombination, and substitution bias. Genome Biology and Evolution. PMID 32986811 DOI: 10.1093/gbe/evaa202   
2020 Nishimura L, Sugimoto R, Inoue J, Nakaoka H, Kanzawa-Kiriyama H, Shinoda KI, Inoue I. Identification of ancient viruses from metagenomic data of the Jomon people. Journal of Human Genetics. PMID 32994538 DOI: 10.1038/s10038-020-00841-6   
2020 Xuan Z, Xie J, Yu H, Zhang S, Li R, Cao M. Mulberry (Morus alba) is a new natural host of Citrus leaf blotch virus in China. Plant Disease. PMID 33006524 DOI: 10.1094/PDIS-07-20-1580-PDN   
2020 Moore SC, Penrice-Randal R, Alruwaili M, Randle N, Armstrong S, Hartley C, Haldenby S, Dong X, Alrezaihi A, Almsaud M, Bentley E, Clark J, García-Dorival I, Gilmore P, Han X, et al. Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. Viruses. 12. PMID 33066701 DOI: 10.3390/v12101164   
2020 Lin Z, Zhou P, Ma X, Deng Y, Liao Z, Li R, Ming R. Comparative analysis of chloroplast genomes in Vasconcellea pubescens A.DC. and Carica papaya L. Scientific Reports. 10: 15799. PMID 32978465 DOI: 10.1038/s41598-020-72769-y   
2020 Zheng R, Sun C. sp. nov., isolated from a deep-sea cold seep. International Journal of Systematic and Evolutionary Microbiology. PMID 32924915 DOI: 10.1099/ijsem.0.004448   
2020 Hao W, Suo F, Lin Q, Chen Q, Zhou L, Liu Z, Cui W, Zhou Z. Design and Construction of Portable CRISPR-Cpf1-Mediated Genome Editing in 168 Oriented Toward Multiple Utilities. Frontiers in Bioengineering and Biotechnology. 8: 524676. PMID 32984297 DOI: 10.3389/fbioe.2020.524676   
2020 Shehata HR, Chandler RA, Newmaster SG. Draft Genome Sequence of Lactobacillus rhamnosus Strain CBC-LR1, Isolated from Homemade Dairy Foods in Bulgaria. Microbiology Resource Announcements. 9. PMID 32943571 DOI: 10.1128/MRA.00961-20   
2020 Hong MJ, Kim JB, Seo YW, Kim DY. F-Box Genes in the Wheat Genome and Expression Profiling in Wheat at Different Developmental Stages. Genes. 11. PMID 33007852 DOI: 10.3390/genes11101154   
2020 Maachi A, Nagata T, Silva JMF. Date palm virus A: first plant virus found in date palm trees. Virus Genes. PMID 33026576 DOI: 10.1007/s11262-020-01801-0   
2020 Maachi A, Nagata T, Silva JMF. Date palm virus A: first plant virus found in date palm trees. Virus Genes. PMID 33026576 DOI: 10.1007/s11262-020-01801-0   
2020 Li S, Niu Y, Chen H, He P. Complete genome sequence of an Arctic Ocean bacterium Shewanella sp. Arc9-LZ with capacity of synthesizing silver nanoparticles in darkness. Marine Genomics. 100808. PMID 32778401 DOI: 10.1016/j.margen.2020.100808   
2020 Ikegame S, Beaty SM, Stevens C, Won ST, Park A, Sachs D, Hong P, Lee B, Thibault PA. Genome-wide transposon mutagenesis of paramyxoviruses reveals constraints on genomic plasticity. Plos Pathogens. 16: e1008877. PMID 33035269 DOI: 10.1371/journal.ppat.1008877   
2020 Allesøe RL, Lemvigh CK, Phan MVT, Clausen PTLC, Florensa AF, Koopmans MPG, Lund O, Cotten M. Automated download and clean-up of family specific databases for kmer-based virus identification. Bioinformatics (Oxford, England). PMID 33031509 DOI: 10.1093/bioinformatics/btaa857   
2020 Kumari A, Bano N, Chaudhary DR, Jha B. Draft genome sequence of plastic degrading Bacillus sp. AIIW2 isolated from the Arabian ocean. Journal of Basic Microbiology. PMID 33006156 DOI: 10.1002/jobm.202000416   
2020 Athukorala A, Forwood JK, Phalen DN, Sarker S. Molecular Characterisation of a Novel and Highly Divergent Passerine Adenovirus 1. Viruses. 12. PMID 32957674 DOI: 10.3390/v12091036   
2020 Scott AD, Zimin AV, Puiu D, Workman R, Britton M, Zaman S, Caballero M, Read AC, Bogdanove AJ, Burns E, Wegrzyn J, Timp W, Salzberg SL, Neale DB. A Reference Genome Sequence for Giant Sequoia. G3 (Bethesda, Md.). PMID 32948606 DOI: 10.1534/g3.120.401612   
2020 Wang L, Lu G, Liu H, Huang L, Jiang W, Li P, Lu X. The complete chloroplast genome sequence of Gynostemma yixingense and comparative analysis with congeneric species. Genetics and Molecular Biology. 43: e20200092. PMID 33001132 DOI: 10.1590/1678-4685-GMB-2020-0092   
2020 Cao LJ, Song W, Yue L, Guo SK, Chen JC, Gong YJ, Hoffmann AA, Wei SJ. Chromosome-level genome of the peach fruit moth Carposina sasakii (Lepidoptera: Carposinidae) provides a resource for evolutionary studies on moths. Molecular Ecology Resources. PMID 33098233 DOI: 10.1111/1755-0998.13288   
2020 Zhao Q, Wu J, Zhang L, Yan C, Jiang S, Li Z, Sun D, Lai Y, Gong Z. Genome-scale analyses and characteristics of putative pathogenicity genes of Stagonosporopsis cucurbitacearum, a pumpkin gummy stem blight fungus. Scientific Reports. 10: 18065. PMID 33093634 DOI: 10.1038/s41598-020-75235-x   
2020 Sun K, Lu H, Fan F, Zhang P, Liu G, Yu X. Occurrence of Chenopodium quinoa mitovirus 1 in in China. Plant Disease. PMID 33021921 DOI: 10.1094/PDIS-02-20-0428-PDN   
2020 Lee C, Klockgether J, Fischer S, Trcek J, Tümmler B, Römling U. Why? - Successful Pseudomonas aeruginosa clones with a focus on clone C. Fems Microbiology Reviews. PMID 32990729 DOI: 10.1093/femsre/fuaa029   
2020 Liu T, Zhu L, Zhu Z, Jiang L. Genome Sequence Analysis of Clostridium tyrobutyricum, a Promising Microbial Host for Human Health and Industrial Applications. Current Microbiology. PMID 32888044 DOI: 10.1007/s00284-020-02175-0   
2020 Park J, Xi H, Kim Y. The Complete Chloroplast Genome of Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean . International Journal of Genomics. 2020: 3236461. PMID 32964010 DOI: 10.1155/2020/3236461   
2020 Cerdeira L, Monte DFM, Fuga B, Sellera FP, Neves I, Rodrigues L, Landgraf M, Lincopan N. Genomic insights of Klebsiella pneumoniae isolated from a native Amazonian fish reveal wide resistome against heavy metals, disinfectants, and clinically relevant antibiotics. Genomics. PMID 32916256 DOI: 10.1016/j.ygeno.2020.09.015   
2020 He S, Dong X, Zhang G, Fan W, Duan S, Shi H, Li D, Li R, Chen G, Long G, Zhao Y, Chen M, Yan M, Yang J, Lu Y, et al. High quality genome of Erigeron breviscapus provides a reference for herbal plants in Asteraceae. Molecular Ecology Resources. PMID 32985109 DOI: 10.1111/1755-0998.13257   
2020 Sun RL, Jing YL, Guo RJ, Li SD. Complete Genome Sequence of the Hypha-Colonizing sp. Strain 76, a Potential Biocontrol Agent. Microbiology Resource Announcements. 9. PMID 32883795 DOI: 10.1128/MRA.00571-20   
2020 Varabyou A, Pockrandt C, Salzberg SL, Pertea M. Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie. Biorxiv : the Preprint Server For Biology. PMID 32995774 DOI: 10.1101/2020.09.21.300913   
2020 Han B, Yi J, Dai J, Zheng T, Gu F, Zhao Q, Zhu F, Song X, Deng H, Wei P, Song C, Liu D, Jiang X, Wang F, Chen Y, et al. A chromosome-level genome assembly of Dendrobium huoshanense using long reads and Hi-C data. Genome Biology and Evolution. PMID 33045048 DOI: 10.1093/gbe/evaa215   
2020 Sun SR, Chen JS, He EQ, Huang MT, Fu HY, Lu JJ, Gao SJ. Genetic variability and molecular evolution of maize yellow mosaic virus populations from different geographic origins. Plant Disease. PMID 33044140 DOI: 10.1094/PDIS-05-20-1013-RE   
2020 Yang M, Zabed HM, Yun J, Zhang G, Qi X. The Draft Genome Sequence of Clostridium butyricum QXYZ514, a Potent Bacterium for Converting Glycerol into Fuels and Bioproducts in the Waste-Based Biorefinery. Current Microbiology. PMID 32902703 DOI: 10.1007/s00284-020-02182-1   
2020 Kumar R, Bröms JE, Sjöstedt A. Exploring the Diversity Within the Genus - An Integrated Pan-Genome and Genome-Mining Approach. Frontiers in Microbiology. 11: 1928. PMID 32849479 DOI: 10.3389/fmicb.2020.01928   
2020 Zhu B, Feng Q, Yu J, Yu Y, Zhu X, Wang Y, Guo J, Hu X, Cai M. Chloroplast genome features of an important medicinal and edible plant: Houttuynia cordata (Saururaceae). Plos One. 15: e0239823. PMID 32986773 DOI: 10.1371/journal.pone.0239823   
2020 Jin L, Chen Y, Yang W, Qiao Z, Zhang X. Complete genome sequence of fish-pathogenic Aeromonas hydrophila HX-3 and a comparative analysis: insights into virulence factors and quorum sensing. Scientific Reports. 10: 15479. PMID 32968153 DOI: 10.1038/s41598-020-72484-8   
2020 Gagnon CA, Lalonde C, Provost C. Porcine reproductive and respiratory syndrome virus whole-genome sequencing efficacy with field clinical samples using a poly(A)-tail viral genome purification method. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 1040638720952411. PMID 32856560 DOI: 10.1177/1040638720952411   
2020 Hildebrandt E, Penzes JJ, Gifford RJ, Agbandje-Mckenna M, Kotin RM. Evolution of dependoparvoviruses across geological timescales-implications for design of AAV-based gene therapy vectors. Virus Evolution. 6: veaa043. PMID 32913662 DOI: 10.1093/ve/veaa043   
2020 Wang X, Wu X, Jiang S, Yin Q, Li D, Wang Y, Delu W, Chen Z. Whole genome sequence and gene annotation resource for Didymella bellidis, associated with tea leaf spot. Plant Disease. PMID 32997583 DOI: 10.1094/PDIS-05-20-0939-A   
2020 Davis ME, Delesalle VA, Blankenship KD, Good JT, Kroenke CM, Kuba GM, Sweeney SP, Byrum CA. Genome Sequences of the Mycobacteriophages Awesomesauce and LastJedi. Microbiology Resource Announcements. 9. PMID 32816978 DOI: 10.1128/MRA.00707-20   
2020 Liu H, Hu H, Zhang S, Jin J, Liang X, Huang B, Wang L. The complete chloroplast genome of the rare species and comparative analysis with related species. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 26: 2075-2083. PMID 33088051 DOI: 10.1007/s12298-020-00882-3