Matthew T. Palmer, Ph.D. - Related publications

2006 University of Alabama, Birmingham, Birmingham, AL, United States 
Molecular Biology, Microbiology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Pinkard O, McFarland S, Sweet T, Coller J. Quantitative tRNA-sequencing uncovers metazoan tissue-specific tRNA regulation. Nature Communications. 11: 4104. PMID 32796835 DOI: 10.1038/s41467-020-17879-x   
2020 Gamper H, Hou YM. A Label-Free Assay for Aminoacylation of tRNA. Genes. 11. PMID 33036365 DOI: 10.3390/genes11101173   
2020 Hoffer E, Hong S, Sunita S, Maehigashi T, Gonzalez RL, Whitford P, Dunham CM. Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife. 9. PMID 33016876 DOI: 10.7554/eLife.51898   
2020 Suzuki T, Yashiro Y, Kikuchi I, Ishigami Y, Saito H, Matsuzawa I, Okada S, Mito M, Iwasaki S, Ma D, Zhao X, Asano K, Lin H, Kirino Y, Sakaguchi Y, et al. Complete chemical structures of human mitochondrial tRNAs. Nature Communications. 11: 4269. PMID 32859890 DOI: 10.1038/s41467-020-18068-6   
2020 Mukhopadhyay S, Deogharia M, Gupta R. Mammalian nuclear TRUB1, mitochondrial TRUB2 and cytoplasmic PUS10 produce conserved pseudouridine 55 in different sets of tRNA. Rna (New York, N.Y.). PMID 33023933 DOI: 10.1261/rna.076810.120   
2020 Duncan GA, Dunigan DD, Van Etten JLV. Diversity of tRNA Clusters in the Chloroviruses. Viruses. 12. PMID 33081353 DOI: 10.3390/v12101173   
2020 Kim HK, Yeom JH, Kay MA. Transfer RNA-Derived Small RNAs: Another Layer of Gene Regulation and Novel Targets for Disease Therapeutics. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 32956625 DOI: 10.1016/j.ymthe.2020.09.013   
2020 Wolff P, Villette C, Zumsteg J, Heintz D, Antoine L, Chane-Woon-Ming B, Droogmans L, Grosjean H, Westhof E. Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea. Rna (New York, N.Y.). PMID 32994183 DOI: 10.1261/rna.077537.120   
2020 Kapur M, Ganguly A, Nagy G, Adamson SI, Chuang JH, Frankel WN, Ackerman SL. Expression of the Neuronal tRNA n-Tr20 Regulates Synaptic Transmission and Seizure Susceptibility. Neuron. PMID 32853550 DOI: 10.1016/j.neuron.2020.07.023   
2020 Lee J, Schwarz KJ, Kim DS, Moore JS, Jewett MC. Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro. Nature Communications. 11: 4304. PMID 32855412 DOI: 10.1038/s41467-020-18001-x   
2020 Lu X, Huang J, Wu S, Zheng Q, Liu P, Feng H, Su X, Fu H, Xi Q, Wang G. The tRNA-like small noncoding RNA mascRNA promotes global protein translation. Embo Reports. e49684. PMID 33073493 DOI: 10.15252/embr.201949684   
2020 Patra D, Banerjee S, Mandi CS, Haseena KS, Basu G, Dutta S. A pyrimido-quinoxaline fused heterocycle lights up transfer RNA upon binding at the Mg2+ binding site. Chembiochem : a European Journal of Chemical Biology. PMID 32869357 DOI: 10.1002/cbic.202000584   
2020 Wang Y, Gai Y, Li Y, Li C, Li Z, Wang X. SARS-CoV-2 has the advantage of competing the iMet-tRNAs with human hosts to allow efficient translation. Molecular Genetics and Genomics : Mgg. PMID 33040198 DOI: 10.1007/s00438-020-01731-4   
2020 Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernández IS. Structural basis for the transition from translation initiation to elongation by an 80S-eIF5B complex. Nature Communications. 11: 5003. PMID 33024099 DOI: 10.1038/s41467-020-18829-3   
2020 Cai RJ, Su HW, Li YY, Javid B. Forward Genetics Reveals a Fusion Polypeptide Causes Mistranslation and Rifampicin Tolerance in . Frontiers in Microbiology. 11: 577756. PMID 33072044 DOI: 10.3389/fmicb.2020.577756   
2020 Zambaldo C, Koh M, Nasertorabi F, Han GW, Chatterjee A, Stevens RC, Schultz PG. An orthogonal seryl-tRNA synthetase/tRNA pair for noncanonical amino acid mutagenesis in Escherichia coli. Bioorganic & Medicinal Chemistry. 28: 115662. PMID 33069069 DOI: 10.1016/j.bmc.2020.115662   
2020 Lin H, Zhou X, Chen X, Huang K, Wu W, Fu J, Li Y, Polychronakos C, Dong GP. tRNA methyltransferase 10 homologue A () mutation in a Chinese patient with diabetes, insulin resistance, intellectual deficiency and microcephaly. Bmj Open Diabetes Research & Care. 8. PMID 33067246 DOI: 10.1136/bmjdrc-2020-001601   
2020 Tavares JF, Davis NK, Poim A, Reis A, Kellner S, Sousa I, Soares AR, Moura GMR, Dedon PC, Santos MAS. tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast. Rna Biology. PMID 32893724 DOI: 10.1080/15476286.2020.1819671   
2020 Wang X, Gu X, Li J, Yue L, Li D, Dong X. Characterization of the Methanomicrobial Archaeal RNase Zs for Processing the CCA-Containing tRNA Precursors. Frontiers in Microbiology. 11: 1851. PMID 32982996 DOI: 10.3389/fmicb.2020.01851   
2020 Wang X, Gu X, Li J, Yue L, Li D, Dong X. Characterization of the Methanomicrobial Archaeal RNase Zs for Processing the CCA-Containing tRNA Precursors. Frontiers in Microbiology. 11: 1851. PMID 32982996 DOI: 10.3389/fmicb.2020.01851   
2020 NIblett D, Nelson C, Leung CS, Rexroad G, Cozy J, Zhou J, Lancaster L, Noller HF. Mutations in Domain IV of Elongation Factor EF-G Confer -1 Frameshifting. Rna (New York, N.Y.). PMID 33008838 DOI: 10.1261/rna.077339.120   
2020 Watson ZL, Ward FR, Méheust R, Ad O, Schepartz A, Banfield JF, Cate JH. Structure of the bacterial ribosome at 2 Å resolution. Elife. 9. PMID 32924932 DOI: 10.7554/eLife.60482   
2020 Zhang R, Noordam L, Ou X, Ma B, Li Y, Das P, Shi S, Liu J, Wang L, Li P, Verstegen MMA, Reddy DS, van der Laan LJW, Peppelenbosch MP, Kwekkeboom J, et al. The biological process of lysine-tRNA charging is therapeutically targetable in liver cancer. Liver International : Official Journal of the International Association For the Study of the Liver. PMID 33084231 DOI: 10.1111/liv.14692   
2020 Saito K, Green R, Buskirk AR. Ribosome recycling is not critical for translational coupling in . Elife. 9. PMID 32965213 DOI: 10.7554/eLife.59974   
2020 De Zoysa T, Phizicky EM. Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences. Plos Genetics. 16: e1008893. PMID 32841241 DOI: 10.1371/journal.pgen.1008893   
2020 Sun M, Shen B, Li W, Samir P, Browne CM, Link AJ, Frank J. A time-resolved cryo-EM Study of S. cerevisiae 80S Ribosome Protein Composition in Response to a Change in Carbon Source. Proteomics. e2000125. PMID 33007145 DOI: 10.1002/pmic.202000125   
2020 Guo J, Chen B, Yu Y, Cheng B, Ju Y, Tang J, Cai Z, Gu Q, Xu J, Zhou H. Structure-guided optimization and mechanistic study of a class of quinazolinone-threonine hybrids as antibacterial ThrRS inhibitors. European Journal of Medicinal Chemistry. 207: 112848. PMID 32980741 DOI: 10.1016/j.ejmech.2020.112848   
2020 Ray B, Mehrotra R. Nucleic acid binding mechanism of flavone derivative, riviciclib: Structural analysis to unveil anticancer potential. Journal of Photochemistry and Photobiology. B, Biology. 211: 111990. PMID 32858336 DOI: 10.1016/j.jphotobiol.2020.111990   
2020 Cao J, Cowan DB, Wang DZ. tRNA-Derived Small RNAs and Their Potential Roles in Cardiac Hypertrophy. Frontiers in Pharmacology. 11: 572941. PMID 33041815 DOI: 10.3389/fphar.2020.572941   
2020 Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G. Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Scientific Reports. 10: 16301. PMID 33004869 DOI: 10.1038/s41598-020-73199-6   
2020 Carpentier P, Leprêtre C, Basset C, Douki T, Torelli S, Duarte V, Hamdane D, Fontecave M, Atta M. Structural, biochemical and functional analyses of tRNA-monooxygenase enzyme MiaE from Pseudomonas putida provide insights into tRNA/MiaE interaction. Nucleic Acids Research. PMID 32785618 DOI: 10.1093/nar/gkaa667   
2020 Poitevin F, Kushner A, Li X, Dao Duc K. Structural Heterogeneities of the Ribosome: New Frontiers and Opportunities for Cryo-EM. Molecules (Basel, Switzerland). 25. PMID 32957592 DOI: 10.3390/molecules25184262   
2020 Zhou W, Wesalo JS, Liu J, Deiters A. Genetic code expansion in mammalian cells: A plasmid system comparison. Bioorganic & Medicinal Chemistry. 115772. PMID 33069552 DOI: 10.1016/j.bmc.2020.115772   
2020 da Silva FS, Cruz ACR, de Almeida Medeiros DB, da Silva SP, Nunes MRT, Martins LC, Chiang JO, da Silva Lemos P, Cunha GM, de Araujo RF, de Oliveira Monteiro HA, Nunes Neto JP. Mitochondrial genome sequencing and phylogeny of Haemagogus albomaculatus, Haemagogus leucocelaenus, Haemagogus spegazzinii, and Haemagogus tropicalis (Diptera: Culicidae). Scientific Reports. 10: 16948. PMID 33046768 DOI: 10.1038/s41598-020-73790-x   
2020 Cai Y, Usher B, Gutierrez C, Tolcan A, Mansour M, Fineran PC, Condon C, Neyrolles O, Genevaux P, Blower TR. A nucleotidyltransferase toxin inhibits growth of through inactivation of tRNA acceptor stems. Science Advances. 6: eabb6651. PMID 32923609 DOI: 10.1126/sciadv.abb6651   
2020 Gerashchenko MV, Nesterchuk MV, Smekalova EM, Paulo JA, Kowalski PS, Akulich KA, Bogorad R, Dmitriev SE, Gygi S, Zatsepin T, Anderson DG, Gladyshev VN, Koteliansky VE. Translation elongation factor 2 depletion by siRNA in mouse liver leads to mTOR-independent translational upregulation of ribosomal protein genes. Scientific Reports. 10: 15473. PMID 32968084 DOI: 10.1038/s41598-020-72399-4   
2020 Huang MS, Hsu YL, Yeh IJ, Liu KT, Yen MC. The Expression Profile of mRNA and tRNA Genes in Splenocytes and Neutrophils after In Vivo Delivery of Antitumor Short Hairpin RNA of Indoleamine 2,3- Dioxygenase. International Journal of Molecular Sciences. 21. PMID 32933162 DOI: 10.3390/ijms21186703   
2020 Campos RK, Wijeratne HRS, Shah P, Garcia-Blanco MA, Bradrick SS. Ribosomal stalk proteins RPLP1 and RPLP2 promote biogenesis of flaviviral and cellular multi-pass transmembrane proteins. Nucleic Acids Research. PMID 32890404 DOI: 10.1093/nar/gkaa717   
2020 Alexaki A, Kames J, Hettiarachchi GK, Athey JC, Katneni UK, Hunt RC, Hamasaki-Katagiri N, Holcomb DD, DiCuccio M, Bar H, Komar AA, Kimchi-Sarfaty C. Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX. F1000research. 9: 174. PMID 33014344 DOI: 10.12688/f1000research.22400.2   
2020 Barr WA, Sheth RB, Kwon J, Cho J, Glickman JW, Hart F, Chatterji OK, Scopino K, Voelkel-Meiman K, Krizanc D, Thayer KM, Weir MP. GCN sensitive protein translation in yeast. Plos One. 15: e0233197. PMID 32946445 DOI: 10.1371/journal.pone.0233197   
2020 Barr WA, Sheth RB, Kwon J, Cho J, Glickman JW, Hart F, Chatterji OK, Scopino K, Voelkel-Meiman K, Krizanc D, Thayer KM, Weir MP. GCN sensitive protein translation in yeast. Plos One. 15: e0233197. PMID 32946445 DOI: 10.1371/journal.pone.0233197   
2020 Vargas-Rodriguez O, Bakhtina M, McGowan D, Abid J, Goto Y, Suga H, Musier-Forsyth K. Human -editing enzyme displays tRNA acceptor stem specificity and relaxed amino acid selectivity. The Journal of Biological Chemistry. PMID 33051185 DOI: 10.1074/jbc.RA120.015981   
2020 Chanphai P, Cloutier F, Reyes-Moreno C, Bérubé G, Tajmir-Riahi HA. Locating the binding sites of two aminobenzoic acid derivatives on tRNA: drug binding efficacy and RNA structure. Journal of Biomolecular Structure & Dynamics. 1-6. PMID 32811341 DOI: 10.1080/07391102.2020.1808076   
2020 Mo X, Du S, Chen X, Wang Y, Liu X, Zhang C, Zhu C, Ding L, Li Y, Tong Y, Ju Q, Qu D, Tan F, Wei F, Cai Q. Lactate Induces Production of the tRNA Half to Promote B-lymphoblastic Cell Proliferation. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 32966775 DOI: 10.1016/j.ymthe.2020.09.010   
2020 Frye M, Bornelöv S. CONCUR: quick and robust calculation of codon usage from ribosome profiling data. Bioinformatics (Oxford, England). PMID 32866237 DOI: 10.1093/bioinformatics/btaa733   
2020 Golubev A, Fatkhullin B, Khusainov I, Jenner L, Gabdulkhakov A, Validov S, Yusupova G, Yusupov M, Usachev K. Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution. Febs Letters. PMID 32852796 DOI: 10.1002/1873-3468.13915   
2020 Caulfield TR, Hayes KE, Qiu Y, Coban M, Seok Oh J, Lane AL, Yoshimitsu T, Hazlehurst L, Copland JA, Tun HW. A Virtual Screening Platform Identifies Chloroethylagelastatin A as a Potential Ribosomal Inhibitor. Biomolecules. 10. PMID 33027969 DOI: 10.3390/biom10101407   
2020 Marchand JA, Pierson Smela MD, Jordan THH, Narasimhan K, Church GM. TBDB: a database of structurally annotated T-box riboswitch:tRNA pairs. Nucleic Acids Research. PMID 32882008 DOI: 10.1093/nar/gkaa721   
2020 Chen M, Liu J, Chen D, Guo X. Complete mitochondrial genome of a blue-tailed skink Plestiodon capito (Reptilia, Squamata, Scincidae) and comparison with other Scincidae lizards. Genetica. PMID 33044712 DOI: 10.1007/s10709-020-00107-1   
2020 Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A. Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi. Nature Communications. 11: 5187. PMID 33056988 DOI: 10.1038/s41467-020-18830-w