| Year |
Citation |
Score |
| 2023 |
Khaipho-Burch M, Cooper M, Crossa J, de Leon N, Holland J, Lewis R, McCouch S, Murray SC, Rabbi I, Ronald P, Ross-Ibarra J, Weigel D, Buckler ES. Genetic modification can improve crop yields - but stop overselling it. Nature. 621: 470-473. PMID 37773222 DOI: 10.1038/d41586-023-02895-w |
0.303 |
|
| 2023 |
Marden E, Sackville Hamilton R, Halewood M, McCouch S. International agreements and the plant genetics research community: A guide to practice. Proceedings of the National Academy of Sciences of the United States of America. 120: e2205773119. PMID 36972443 DOI: 10.1073/pnas.2205773119 |
0.353 |
|
| 2023 |
Bessho-Uehara K, Masuda K, Wang DR, Angeles-Shim RB, Obara K, Nagai K, Murase R, Aoki SI, Furuta T, Miura K, Wu J, Yamagata Y, Yasui H, Kantar MB, Yoshimura A, ... ... McCouch SR, et al. , an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication. Proceedings of the National Academy of Sciences of the United States of America. 120: e2207105120. PMID 36649409 DOI: 10.1073/pnas.2207105120 |
0.381 |
|
| 2023 |
Hanlon MT, Vejchasarn P, Fonta JE, Schneider HM, McCouch SR, Brown KM. Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation. Bmc Plant Biology. 23: 6. PMID 36597029 DOI: 10.1186/s12870-022-04026-5 |
0.387 |
|
| 2022 |
Barrero LS, Willmann MR, Craft EJ, Akther KM, Harrington SE, Garzon-Martinez GA, Glahn RP, Piñeros MA, McCouch SR. Identifying genes associated with abiotic stress tolerance suitable for CRISPR/Cas9 editing in upland rice cultivars adapted to acid soils. Plant Direct. 6: e469. PMID 36514785 DOI: 10.1002/pld3.469 |
0.332 |
|
| 2022 |
Eizenga GC, Kim H, Jung JKH, Greenberg AJ, Edwards JD, Naredo MEB, Banaticla-Hilario MCN, Harrington SE, Shi Y, Kimball JA, Harper LA, McNally KL, McCouch SR. Phenotypic Variation and the Impact of Admixture in the Species Complex (). Frontiers in Plant Science. 13: 787703. PMID 35769295 DOI: 10.3389/fpls.2022.787703 |
0.705 |
|
| 2022 |
Cerioli T, Hernandez CO, Angira B, McCouch SR, Robbins KR, Famoso AN. Development and validation of an optimized marker set for genomic selection in southern U.S. rice breeding programs. The Plant Genome. e20219. PMID 35611838 DOI: 10.1002/tpg2.20219 |
0.765 |
|
| 2021 |
Bohra A, Kilian B, Sivasankar S, Caccamo M, Mba C, McCouch SR, Varshney RK. Reap the crop wild relatives for breeding future crops. Trends in Biotechnology. PMID 34629170 DOI: 10.1016/j.tibtech.2021.08.009 |
0.405 |
|
| 2021 |
Cobb JN, Chen C, Shi Y, Maron LG, Liu D, Rutzke M, Greenberg A, Craft E, Shaff J, Paul E, Akther K, Wang S, Kochian LV, Zhang D, Zhang M, ... McCouch SR, et al. Genetic architecture of root and shoot ionomes in rice (Oryza sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 34018019 DOI: 10.1007/s00122-021-03848-5 |
0.479 |
|
| 2021 |
Reynolds M, Atkin OK, Bennett M, Cooper M, Dodd IC, Foulkes MJ, Frohberg C, Hammer G, Henderson IR, Huang B, Korzun V, McCouch SR, Messina CD, Pogson BJ, Slafer GA, et al. Addressing Research Bottlenecks to Crop Productivity. Trends in Plant Science. PMID 33893046 DOI: 10.1016/j.tplants.2021.03.011 |
0.316 |
|
| 2021 |
Yang Z, Li N, Kitano T, Li P, Spindel JE, Wang L, Bai G, Xiao Y, McCouch SR, Ishihara A, Zhang J, Yang X, Chen Z, Wei J, Ge H, et al. Genetic mapping identifies a rice naringenin O-glucosyltransferase that influences insect resistance. The Plant Journal : For Cell and Molecular Biology. PMID 33745166 DOI: 10.1111/tpj.15244 |
0.34 |
|
| 2020 |
Melandri G, Sikirou M, Arbelaez JD, Shittu A, Semwal VK, Konaté KA, Maji AT, Ngaujah SA, Akintayo I, Govindaraj V, Shi Y, Agosto-Peréz FJ, Greenberg AJ, Atlin G, Ramaiah V, ... McCouch SR, et al. Multiple Small-Effect Alleles of Origin Enhance High Iron-Associated Stress Tolerance in Rice Under Field Conditions in West Africa. Frontiers in Plant Science. 11: 604938. PMID 33584748 DOI: 10.3389/fpls.2020.604938 |
0.338 |
|
| 2020 |
Singh N, Wang DR, Ali L, Kim H, Akther KM, Harrington SE, Kang JW, Shakiba E, Shi Y, DeClerck G, Meadows B, Govindaraj V, Ahn SN, Eizenga GC, McCouch SR. A Coordinated Suite of Wild-Introgression Lines in and Elite Backgrounds. Frontiers in Plant Science. 11: 564824. PMID 33281840 DOI: 10.3389/fpls.2020.564824 |
0.426 |
|
| 2020 |
Volante A, Tondelli A, Desiderio F, Abbruscato P, Menin B, Biselli C, Casella L, Singh N, McCouch SR, Tharreau D, Zampieri E, Cattivelli L, Valè G. Genome wide association studies for japonica rice resistance to blast in field and controlled conditions. Rice (New York, N.Y.). 13: 71. PMID 33030605 DOI: 10.1186/s12284-020-00431-2 |
0.302 |
|
| 2020 |
Karavolias NG, Greenberg AJ, Barrero LS, Maron LG, Shi Y, Monteverde E, Piñeros MA, McCouch SR. Low Additive Genetic Variation in a Trait Under Selection in Domesticated Rice. G3 (Bethesda, Md.). PMID 32439738 DOI: 10.1534/G3.120.401194 |
0.47 |
|
| 2020 |
Morales KY, Singh N, Perez FA, Ignacio JC, Thapa R, Arbelaez JD, Tabien RE, Famoso A, Wang DR, Septiningsih EM, Shi Y, Kretzschmar T, McCouch SR, Thomson MJ. An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies. Plos One. 15: e0232479. PMID 32407369 DOI: 10.1371/Journal.Pone.0232479 |
0.808 |
|
| 2020 |
Santantonio N, Atanda SA, Beyene Y, Varshney RK, Olsen M, Jones E, Roorkiwal M, Gowda M, Bharadwaj C, Gaur PM, Zhang X, Dreher K, Ayala-Hernández C, Crossa J, Pérez-Rodríguez P, ... ... McCouch S, et al. Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia. Frontiers in Plant Science. 11: 353. PMID 32292411 DOI: 10.3389/Fpls.2020.00353 |
0.409 |
|
| 2020 |
Diop B, Wang DR, Drame KN, Gracen V, Tongoona P, Dzidzienyo D, Nartey E, Greenberg AJ, Djiba S, Danquah EY, McCouch SR. Bridging old and new: Diversity and evaluation of high iron-associated stress response of rice cultivated in W. Africa. Journal of Experimental Botany. PMID 32277700 DOI: 10.1093/jxb/eraa182 |
0.398 |
|
| 2020 |
Raubach S, Kilian B, Dreher K, Amri A, Bassi FM, Boukar O, Cook D, Cruickshank A, Fatokun C, Haddad NE, Humphries A, Jordan D, Kehel Z, Kumar S, Labarosa SJ, ... ... McCouch S, et al. From bits to bites: Advancement of the Germinate platform to support prebreeding informatics for crop wild relatives Crop Science. 1-29. DOI: 10.1002/Csc2.20248 |
0.398 |
|
| 2019 |
Melandri G, Prashar A, Mccouch SR, Van Der Linden G, Jones HG, Kadam N, Jagadish K, Bouwmeester H, Ruyter-Spira C. Association mapping and genetic dissection of drought-induced canopy temperature differences in rice. Journal of Experimental Botany. PMID 31846000 DOI: 10.1093/jxb/erz527 |
0.406 |
|
| 2019 |
Eizenga GC, Jia MH, Jackson AK, Boykin DL, Ali ML, Shakiba E, Tran NT, McCouch SR, Edwards JD. Validation of Yield Component Traits Identified by Genome-Wide Association Mapping in a × Rice Biparental Mapping Population. The Plant Genome. 12. PMID 30951093 DOI: 10.3835/Plantgenome2018.04.0021 |
0.825 |
|
| 2019 |
Monteverde E, Gutierrez L, Blanco P, Pérez de Vida F, Rosas JE, Bonnecarrère V, Quero G, McCouch S. Integrating Molecular Markers and Environmental Covariates To Interpret Genotype by Environment Interaction in Rice ( L.) Grown in Subtropical Areas. G3 (Bethesda, Md.). PMID 30877079 DOI: 10.1534/G3.119.400064 |
0.452 |
|
| 2018 |
Quero G, Gutiérrez L, Monteverde E, Blanco P, Pérez de Vida F, Rosas J, Fernández S, Garaycochea S, McCouch S, Berberian N, Simondi S, Bonnecarrère V. Genome-Wide Association Study Using Historical Breeding Populations Discovers Genomic Regions Involved in High-Quality Rice. The Plant Genome. 11. PMID 30512035 DOI: 10.3835/Plantgenome2017.08.0076 |
0.527 |
|
| 2018 |
Wang DR, Agosto-Pérez FJ, Chebotarov D, Shi Y, Marchini J, Fitzgerald M, McNally KL, Alexandrov N, McCouch SR. An imputation platform to enhance integration of rice genetic resources. Nature Communications. 9: 3519. PMID 30158584 DOI: 10.1038/S41467-018-05538-1 |
0.406 |
|
| 2018 |
Kuroha T, Nagai K, Gamuyao R, Wang DR, Furuta T, Nakamori M, Kitaoka T, Adachi K, Minami A, Mori Y, Mashiguchi K, Seto Y, Yamaguchi S, Kojima M, Sakakibara H, ... ... McCouch SR, et al. Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science (New York, N.Y.). 361: 181-186. PMID 30002253 DOI: 10.1126/Science.Aat1577 |
0.301 |
|
| 2018 |
Rosas JE, Martínez S, Blanco P, Pérez de Vida F, Bonnecarrère V, Mosquera G, Cruz M, Garaycochea S, Monteverde E, McCouch S, Germán S, Jannink JL, Gutiérrez L. Resistance to Multiple Temperate and Tropical Stem and Sheath Diseases of Rice. The Plant Genome. 11. PMID 29505639 DOI: 10.3835/Plantgenome2017.03.0029 |
0.361 |
|
| 2018 |
Halewood M, Chiurugwi T, Sackville Hamilton R, Kurtz B, Marden E, Welch E, Michiels F, Mozafari J, Sabran M, Patron N, Kersey P, Bastow R, Dorius S, Dias S, McCouch S, et al. Plant genetic resources for food and agriculture: opportunities and challenges emerging from the science and information technology revolution. The New Phytologist. PMID 29359808 DOI: 10.1111/Nph.14993 |
0.36 |
|
| 2018 |
Monteverde E, Rosas JE, Blanco P, Pérez de Vida F, Bonnecarrère V, Quero G, Gutierrez L, McCouch S. Multienvironment Models Increase Prediction Accuracy of Complex Traits in Advanced Breeding Lines of Rice Crop Science. 58: 1519-1530. DOI: 10.2135/Cropsci2017.09.0564 |
0.328 |
|
| 2017 |
Arbelaez JD, Maron LG, Jobe TO, Piñeros MA, Famoso AN, Rebelo AR, Singh N, Ma Q, Fei Z, Kochian LV, McCouch SR. () contributes to natural variation in aluminum resistance in diverse genetic backgrounds of rice (). Plant Direct. 1: e00014. PMID 31245663 DOI: 10.1002/pld3.14 |
0.761 |
|
| 2017 |
Thomson MJ, Singh N, Dwiyanti MS, Wang DR, Wright MH, Perez FA, DeClerck G, Chin JH, Malitic-Layaoen GA, Juanillas VM, Dilla-Ermita CJ, Mauleon R, Kretzschmar T, McCouch SR. Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications. Rice (New York, N.Y.). 10: 40. PMID 28856618 DOI: 10.1186/S12284-017-0181-2 |
0.572 |
|
| 2017 |
Kim J, Lee HJ, Jung YJ, Kang KK, Tyagi W, Kovach M, Sweeney M, McCouch S, Cho YG. Functional properties of an alternative, tissue-specific promoter for rice NADPH-dependent dihydroflavonol reductase. Plos One. 12: e0183722. PMID 28841686 DOI: 10.1371/Journal.Pone.0183722 |
0.706 |
|
| 2017 |
Wang DR, Han R, Wolfrum EJ, McCouch SR. The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa. The New Phytologist. PMID 28556941 DOI: 10.1111/nph.14614 |
0.417 |
|
| 2017 |
Shakiba E, Edwards JD, Jodari F, Duke SE, Baldo AM, Korniliev P, McCouch SR, Eizenga GC. Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis. Plos One. 12: e0172133. PMID 28282385 DOI: 10.1371/Journal.Pone.0172133 |
0.795 |
|
| 2016 |
Kim H, Jung J, Singh N, Greenberg A, Doyle JJ, Tyagi W, Chung JW, Kimball J, Hamilton RS, McCouch SR. Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice. Rice (New York, N.Y.). 9: 56. PMID 27730519 DOI: 10.1186/s12284-016-0119-0 |
0.348 |
|
| 2016 |
Spindel JE, McCouch SR. When more is better: how data sharing would accelerate genomic selection of crop plants. The New Phytologist. PMID 27716975 DOI: 10.1111/nph.14174 |
0.344 |
|
| 2016 |
Bimber BN, Raboin MJ, Letaw J, Nevonen KA, Spindel JE, McCouch SR, Cervera-Juanes R, Spindel E, Carbone L, Ferguson B, Vinson A. Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation. Bmc Genomics. 17: 676. PMID 27558348 DOI: 10.1186/S12864-016-2966-X |
0.316 |
|
| 2016 |
Bessho-Uehara K, Wang DR, Furuta T, Minami A, Nagai K, Gamuyao R, Asano K, Angeles-Shim RB, Shimizu Y, Ayano M, Komeda N, Doi K, Miura K, Toda Y, Kinoshita T, ... ... McCouch SR, et al. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Proceedings of the National Academy of Sciences of the United States of America. PMID 27466405 DOI: 10.1073/Pnas.1604849113 |
0.362 |
|
| 2016 |
Biscarini F, Cozzi P, Casella L, Riccardi P, Vattari A, Orasen G, Perrini R, Tacconi G, Tondelli A, Biselli C, Cattivelli L, Spindel J, McCouch S, Abbruscato P, Valé G, et al. Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions. Plos One. 11: e0155425. PMID 27228161 DOI: 10.1371/Journal.Pone.0155425 |
0.532 |
|
| 2016 |
McCouch SR, Wright MH, Tung CW, Maron LG, McNally KL, Fitzgerald M, Singh N, DeClerck G, Agosto-Perez F, Korniliev P, Greenberg AJ, Naredo ME, Mercado SM, Harrington SE, Shi Y, et al. Open access resources for genome-wide association mapping in rice. Nature Communications. 7: 10532. PMID 26842267 DOI: 10.1038/Ncomms10532 |
0.446 |
|
| 2016 |
Crowell S, Korniliev P, Falcão A, Ismail A, Gregorio G, Mezey J, McCouch S. Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters. Nature Communications. 7: 10527. PMID 26841834 DOI: 10.1038/Ncomms10527 |
0.57 |
|
| 2016 |
Eizenga GC, Edwards JD, Yeater KM, McCouch SR, McClung AM. Transgressive variation for yield components measured throughout the growth cycle of jefferson rice (Oryza sativa) × O. rufipogon introgression lines Crop Science. 56: 2336-2347. DOI: 10.2135/Cropsci2015.10.0603 |
0.651 |
|
| 2016 |
Martínez CP, Tohme J, López J, Borrero J, McCouch S, Roca W, Chatel M, Guimaräes E. Estado actual del mejoramiento del arroz mediante la utilización de especies silvestres de arroz en CIAT. Agronomía Mesoamericana. 9: 10. DOI: 10.15517/am.v9i1.24609 |
0.328 |
|
| 2016 |
Spindel JE, Begum H, Akdemir D, Collard B, Redoña E, Jannink JL, McCouch S. Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement Heredity. 116: 395-408. DOI: 10.1038/hdy.2015.113 |
0.4 |
|
| 2016 |
Ogawa S, Valencia MO, Lorieux M, Arbelaez JD, McCouch S, Ishitani M, Selvaraj MG. Identification of QTLs associated with agronomic performance under nitrogen-deficient conditions using chromosome segment substitution lines of a wild rice relative, Oryza rufipogon Acta Physiologiae Plantarum. 38. DOI: 10.1007/S11738-016-2119-5 |
0.494 |
|
| 2016 |
Moncada MDP, Tovar E, Montoya JC, González A, Spindel J, McCouch S. A genetic linkage map of coffee (Coffea arabica L.) and QTL for yield, plant height, and bean size Tree Genetics and Genomes. 12: 1-17. DOI: 10.1007/S11295-015-0927-1 |
0.544 |
|
| 2015 |
Kang H, Wang Y, Peng S, Zhang Y, Xiao Y, Wang D, Qu S, Li Z, Yan S, Wang Z, Liu W, Ning Y, Korniliev P, Leung H, Mezey J, ... McCouch SR, et al. Dissection of the genetic architecture of rice resistance to the blast fungus Magnaporthe oryzae. Molecular Plant Pathology. PMID 26574735 DOI: 10.1111/Mpp.12340 |
0.322 |
|
| 2015 |
Spindel J, Wright M, Chen C, Cobb J, Gage J, Harrington S, Lorieux M, Ahmadi N, McCouch S. Erratum to: Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 26520113 DOI: 10.1007/s00122-015-2618-6 |
0.337 |
|
| 2015 |
Furuta T, Komeda N, Asano K, Uehara K, Gamuyao R, Shim-Angeles RB, Nagai K, Doi K, Wang DR, Yasui H, Yoshimura A, Wu J, McCouch SR, Ashikari M. Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci. G3 (Bethesda, Md.). PMID 26338659 DOI: 10.1534/g3.115.020834 |
0.31 |
|
| 2015 |
Gould B, McCouch S, Geber M. De Novo Transcriptome Assembly and Identification of Gene Candidates for Rapid Evolution of Soil Al Tolerance in Anthoxanthum odoratum at the Long-Term Park Grass Experiment. Plos One. 10: e0124424. PMID 26148203 DOI: 10.1371/Journal.Pone.0124424 |
0.353 |
|
| 2015 |
Spindel J, Begum H, Akdemir D, Virk P, Collard B, Redoña E, Atlin G, Jannink JL, McCouch SR. Correction: Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines. Plos Genetics. 11: e1005350. PMID 26125618 DOI: 10.1371/journal.pgen.1005350 |
0.415 |
|
| 2015 |
Hua L, Wang DR, Tan L, Fu Y, Liu F, Xiao L, Zhu Z, Fu Q, Sun X, Gu P, Cai H, McCouch SR, Sun C. LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice. The Plant Cell. PMID 26082172 DOI: 10.1105/tpc.15.00260 |
0.37 |
|
| 2015 |
Begum H, Spindel JE, Lalusin A, Borromeo T, Gregorio G, Hernandez J, Virk P, Collard B, McCouch SR. Genome-wide association mapping for yield and other agronomic traits in an elite breeding population of tropical rice (Oryza sativa). Plos One. 10: e0119873. PMID 25785447 DOI: 10.1371/journal.pone.0119873 |
0.505 |
|
| 2015 |
Arbelaez JD, Moreno LT, Singh N, Tung CW, Maron LG, Ospina Y, Martinez CP, Grenier C, Lorieux M, McCouch S. Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga. Molecular Breeding : New Strategies in Plant Improvement. 35: 81. PMID 25705117 DOI: 10.1007/S11032-015-0276-7 |
0.455 |
|
| 2015 |
Spindel J, Begum H, Akdemir D, Virk P, Collard B, Redoña E, Atlin G, Jannink JL, McCouch SR. Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines. Plos Genetics. 11: e1004982. PMID 25689273 DOI: 10.1371/Journal.Pgen.1004982 |
0.466 |
|
| 2015 |
Pariasca-Tanaka J, Lorieux M, He C, McCouch S, Thomson MJ, Wissuwa M. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses Euphytica. 201: 67-78. DOI: 10.1007/S10681-014-1183-4 |
0.592 |
|
| 2014 |
Gould B, McCouch S, Geber M. Variation in soil aluminium tolerance genes is associated with local adaptation to soils at the Park Grass Experiment. Molecular Ecology. 23: 6058-72. PMID 25145641 DOI: 10.1111/Mec.12893 |
0.395 |
|
| 2014 |
Kim H, Jeong EG, Ahn SN, Doyle J, Singh N, Greenberg AJ, Won YJ, McCouch SR. Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people's republic of Korea (DPRK; North Korea). Rice (New York, N.Y.). 7: 7. PMID 25006358 DOI: 10.1186/s12284-014-0007-4 |
0.345 |
|
| 2014 |
Varshney RK, Terauchi R, McCouch SR. Harvesting the promising fruits of genomics: applying genome sequencing technologies to crop breeding. Plos Biology. 12: e1001883. PMID 24914810 DOI: 10.1371/journal.pbio.1001883 |
0.352 |
|
| 2014 |
Crowell S, Falcão AX, Shah A, Wilson Z, Greenberg AJ, McCouch SR. High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama. Plant Physiology. 165: 479-495. PMID 24696519 DOI: 10.1104/pp.114.238626 |
0.454 |
|
| 2014 |
Cardoso C, Zhang Y, Jamil M, Hepworth J, Charnikhova T, Dimkpa SO, Meharg C, Wright MH, Liu J, Meng X, Wang Y, Li J, McCouch SR, Leyser O, Price AH, et al. Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs. Proceedings of the National Academy of Sciences of the United States of America. 111: 2379-84. PMID 24464483 DOI: 10.1073/Pnas.1317360111 |
0.431 |
|
| 2014 |
Ogawa S, Selvaraj MG, Fernando AJ, Lorieux M, Ishitani M, McCouch S, Arbelaez JD. N- and P-mediated seminal root elongation response in rice seedlings Plant and Soil. 375: 303-315. DOI: 10.1007/S11104-013-1955-Y |
0.349 |
|
| 2014 |
Gartner GAL, McCouch SR, Botero MDPM. Segregation analysis of molecular markers in a population de-rived from Coffea liberica Hiern x C. eugenioides L Acta Agronomica. 63. |
0.352 |
|
| 2013 |
Dharmawardhana P, Ren L, Amarasinghe V, Monaco M, Thomason J, Ravenscroft D, McCouch S, Ware D, Jaiswal P. A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress. Rice (New York, N.Y.). 6: 15. PMID 24280345 DOI: 10.1186/1939-8433-6-15 |
0.391 |
|
| 2013 |
Bandillo N, Raghavan C, Muyco PA, Sevilla MA, Lobina IT, Dilla-Ermita CJ, Tung CW, McCouch S, Thomson M, Mauleon R, Singh RK, Gregorio G, Redoña E, Leung H. Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice (New York, N.Y.). 6: 11. PMID 24280183 DOI: 10.1186/1939-8433-6-11 |
0.624 |
|
| 2013 |
McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman WR, Tanksley SD. Molecular mapping of rice chromosomes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 76: 815-29. PMID 24232389 DOI: 10.1007/Bf00273666 |
0.415 |
|
| 2013 |
Cho YG, Eun MY, McCouch SR, Chae YA. The semidwarf gene, sd-1, of rice (Oryza sativa L.). II. Molecular mapping and marker-assisted selection. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 89: 54-9. PMID 24177769 DOI: 10.1007/BF00226982 |
0.446 |
|
| 2013 |
Yanagihara S, McCouch SR, Ishikawa K, Ogi Y, Maruyama K, Ikehashi H. Molecular analysis of the inheritance of the S-5 locus, conferring wide compatibility in Indica/Japonica hybrids of rice (O. sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 90: 182-8. PMID 24173889 DOI: 10.1007/BF00222200 |
0.394 |
|
| 2013 |
Wu P, Zhang G, Ladha JK, McCouch SR, Huang N. Molecular-marker-facilitated investigation on the ability to stimulate N2 fixation in the rhizosphere by irrigated rice plants. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 91: 1177-83. PMID 24170043 DOI: 10.1007/BF00220926 |
0.375 |
|
| 2013 |
Ray JD, Yu L, McCouch SR, Champoux MC, Wang G, Nguyen HT. Mapping quantitative trait loci associated with root penetration ability in rice (Oryza sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 92: 627-36. PMID 24166384 DOI: 10.1007/Bf00226082 |
0.318 |
|
| 2013 |
Koh HJ, Heu MH, McCouch SR. Molecular mapping of the ge (s) gene controlling the super-giant embryo character in rice (Oryza sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 93: 257-61. PMID 24162226 DOI: 10.1007/BF00225754 |
0.35 |
|
| 2013 |
Spindel J, Wright M, Chen C, Cobb J, Gage J, Harrington S, Lorieux M, Ahmadi N, McCouch S. Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 2699-716. PMID 23918062 DOI: 10.1007/S00122-013-2166-X |
0.53 |
|
| 2013 |
McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, et al. Agriculture: Feeding the future. Nature. 499: 23-4. PMID 23823779 DOI: 10.1038/499023A |
0.356 |
|
| 2013 |
Jung JK, McCouch S. Getting to the roots of it: Genetic and hormonal control of root architecture. Frontiers in Plant Science. 4: 186. PMID 23785372 DOI: 10.3389/fpls.2013.00186 |
0.347 |
|
| 2013 |
Takano-Kai N, Jiang H, Powell A, McCouch S, Takamure I, Furuya N, Doi K, Yoshimura A. Multiple and independent origins of short seeded alleles of GS3 in rice. Breeding Science. 63: 77-85. PMID 23641184 DOI: 10.1270/Jsbbs.63.77 |
0.454 |
|
| 2013 |
Cobb JN, Declerck G, Greenberg A, Clark R, McCouch S. Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 867-87. PMID 23471459 DOI: 10.1007/S00122-013-2066-0 |
0.515 |
|
| 2013 |
Clark RT, Famoso AN, Zhao K, Shaff JE, Craft EJ, Bustamante CD, McCouch SR, Aneshansley DJ, Kochian LV. High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant, Cell & Environment. 36: 454-66. PMID 22860896 DOI: 10.1111/J.1365-3040.2012.02587.X |
0.761 |
|
| 2013 |
Imai I, Kimball JA, Conway B, Yeater KM, McCouch SR, McClung A. Validation of yield-enhancing quantitative trait loci from a low-yielding wild ancestor of rice Molecular Breeding. 32: 101-120. DOI: 10.1007/S11032-013-9855-7 |
0.304 |
|
| 2013 |
Gartner GAL, McCouch SR, Moncada MDP. A genetic map of an interspecific diploid pseudo testcross population of coffee Euphytica. 192: 305-323. DOI: 10.1007/s10681-013-0926-y |
0.462 |
|
| 2012 |
Chen C, DeClerck G, Tian F, Spooner W, McCouch S, Buckler E. PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. Plos One. 7: e46596. PMID 23144785 DOI: 10.1371/Journal.Pone.0046596 |
0.483 |
|
| 2012 |
McCouch SR, McNally KL, Wang W, Sackville Hamilton R. Genomics of gene banks: A case study in rice. American Journal of Botany. 99: 407-23. PMID 22314574 DOI: 10.3732/Ajb.1100385 |
0.422 |
|
| 2012 |
Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, ... ... McCouch S, et al. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology. 30: 105-11. PMID 22158310 DOI: 10.1038/Nbt.2050 |
0.549 |
|
| 2012 |
Ghesquière A, Albar L, Lorieux M, Ahmadi N, Fargette D, Huang N, McCouch SR, Notteghem JL. A major quantitative trait locus for rice yellow mottle virus resistance maps to a cluster of blast resistance genes on chromosome 12. Phytopathology. 87: 1243-9. PMID 18945025 DOI: 10.1094/PHYTO.1997.87.12.1243 |
0.344 |
|
| 2012 |
Shen QJ, Yu D, Jeon JS, Piffanelli P, Abbruscato P, Guo ZJ, Zhang Y, Itoh T, Lee SS, Buell CR, Nagato Y, McCouch S, Yano M, Wang Gl, Jena KK, et al. Nomenclature report on rice WRKY's - conflict regarding gene names and its solution Rice. 5: 1-3. DOI: 10.1186/1939-8433-5-3 |
0.399 |
|
| 2012 |
McCouch SR, Kovach MJ, Sweeney M, Jiang H, Semon M. The dynamics of rice domestication: A balance between gene flow and genetic isolation Biodiversity in Agriculture: Domestication, Evolution, and Sustainability. 311-329. DOI: 10.1017/CBO9781139019514.018 |
0.799 |
|
| 2012 |
Thomson MJ, Zhao K, Wright M, McNally KL, Rey J, Tung CW, Reynolds A, Scheffler B, Eizenga G, McClung A, Kim H, Ismail AM, de Ocampo M, Mojica C, Reveche MY, ... ... McCouch SR, et al. High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform Molecular Breeding. 29: 875-886. DOI: 10.1007/S11032-011-9663-X |
0.636 |
|
| 2011 |
Zhao K, Tung CW, Eizenga GC, Wright MH, Ali ML, Price AH, Norton GJ, Islam MR, Reynolds A, Mezey J, McClung AM, Bustamante CD, McCouch SR. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nature Communications. 2: 467. PMID 21915109 DOI: 10.1038/Ncomms1467 |
0.503 |
|
| 2011 |
Famoso AN, Zhao K, Clark RT, Tung CW, Wright MH, Bustamante C, Kochian LV, McCouch SR. Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. Plos Genetics. 7: e1002221. PMID 21829395 DOI: 10.1371/Journal.Pgen.1002221 |
0.803 |
|
| 2011 |
Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA. Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. Bmc Genomics. 12: 142. PMID 21385395 DOI: 10.1186/1471-2164-12-142 |
0.304 |
|
| 2011 |
Youens-Clark K, Buckler E, Casstevens T, Chen C, Declerck G, Derwent P, Dharmawardhana P, Jaiswal P, Kersey P, Karthikeyan AS, Lu J, McCouch SR, Ren L, Spooner W, Stein JC, et al. Gramene database in 2010: updates and extensions. Nucleic Acids Research. 39: D1085-94. PMID 21076153 DOI: 10.1093/Nar/Gkq1148 |
0.505 |
|
| 2011 |
Liakat Ali M, McClung AM, Jia MH, Kimball JA, McCouch SR, Eizenga GC. A rice diversity panel evaluated for genetic and agro-morphological diversity between subpopulations and its geographic distribution Crop Science. 51: 2021-2035. DOI: 10.2135/cropsci2010.11.0641 |
0.45 |
|
| 2011 |
Kaushik A, Jain S, McCouch SR, Jain RK. Phylogenetic relationships among various groups of rice {Oryza sativa L.) as revealed by microsatellite and transposable element-based marker analysis Indian Journal of Genetics and Plant Breeding. 71: 139-150. |
0.396 |
|
| 2010 |
Famoso AN, Clark RT, Shaff JE, Craft E, McCouch SR, Kochian LV. Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms. Plant Physiology. 153: 1678-91. PMID 20538888 DOI: 10.1104/Pp.110.156794 |
0.739 |
|
| 2010 |
Zhao K, Wright M, Kimball J, Eizenga G, McClung A, Kovach M, Tyagi W, Ali ML, Tung CW, Reynolds A, Bustamante CD, McCouch SR. Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. Plos One. 5: e10780. PMID 20520727 DOI: 10.1371/Journal.Pone.0010780 |
0.809 |
|
| 2010 |
Maas LF, McClung A, McCouch S. Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 895-908. PMID 19949767 DOI: 10.1007/S00122-009-1219-7 |
0.444 |
|
| 2010 |
Orjuela J, Garavito A, Bouniol M, Arbelaez JD, Moreno L, Kimball J, Wilson G, Rami JF, Tohme J, McCouch SR, Lorieux M. A universal core genetic map for rice. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 563-72. PMID 19847389 DOI: 10.1007/s00122-009-1176-1 |
0.429 |
|
| 2010 |
McCouch SR, Zhao K, Wright M, Tung CW, Ebana K, Thomson M, Reynolds A, Wang D, Declerck G, Ali ML, Mcclung A, Eizenga G, Bustamante C. Development of genome-wide SNP assays for rice Breeding Science. 60: 524-535. DOI: 10.1270/Jsbbs.60.524 |
0.646 |
|
| 2010 |
Chen C, DeClerck G, Casstevens T, Youens-Clark K, Zhang J, Ware D, Jaiswal P, McCouch S, Buckler E. The Gramene Genetic Diversity Module: a resource for genotype-phenotype association analysis in grass species Nature Precedings. DOI: 10.1038/Npre.2010.4645.1 |
0.432 |
|
| 2010 |
Tung CW, Zhao K, Wright MH, Ali ML, Jung J, Kimball J, Tyagi W, Thomson MJ, McNally K, Leung H, Kim H, Ahn SN, Reynolds A, Scheffler B, Eizenga G, ... ... McCouch SR, et al. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) Rice. 3: 205-217. DOI: 10.1007/S12284-010-9056-5 |
0.629 |
|
| 2010 |
This D, Comstock J, Courtois B, Xu Y, Ahmadi N, Vonhof WM, Fleet C, Setter T, McCouch S. Genetic analysis of water use efficiency in rice (Oryza sativa L.) at the leaf level Rice. 3: 72-86. DOI: 10.1007/S12284-010-9036-9 |
0.469 |
|
| 2010 |
Cho YG, Kang HJ, Lee YT, Jong SK, Eun MY, McCouch SR. Identification of quantitative trait loci for physical and chemical properties of rice grain Plant Biotechnology Reports. 4: 61-73. DOI: 10.1007/s11816-009-0120-9 |
0.431 |
|
| 2010 |
Asante MD, Kovach MJ, Huang L, Harrington S, Dartey PK, Akromah R, Semon M, McCouch S. The genetic origin of fragrance in NERICA1 Molecular Breeding. 26: 419-424. DOI: 10.1007/S11032-009-9382-8 |
0.81 |
|
| 2010 |
Thomson MJ, Ismail AM, McCouch SR, Mackill DJ. Marker assisted breeding Abiotic Stress Adaptation in Plants: Physiological, Molecular and Genomic Foundation. 451-469. DOI: 10.1007/978-90-481-3112-9_20 |
0.605 |
|
| 2009 |
Ni J, Pujar A, Youens-Clark K, Yap I, Jaiswal P, Tecle I, Tung CW, Ren L, Spooner W, Wei X, Avraham S, Ware D, Stein L, McCouch S. Gramene QTL database: development, content and applications. Database : the Journal of Biological Databases and Curation. 2009: bap005. PMID 20157478 DOI: 10.1093/Database/Bap005 |
0.83 |
|
| 2009 |
Kovach MJ, Calingacion MN, Fitzgerald MA, McCouch SR. The origin and evolution of fragrance in rice (Oryza sativa L.). Proceedings of the National Academy of Sciences of the United States of America. 106: 14444-9. PMID 19706531 DOI: 10.1073/Pnas.0904077106 |
0.796 |
|
| 2009 |
Takano-Kai N, Jiang H, Kubo T, Sweeney M, Matsumoto T, Kanamori H, Padhukasahasram B, Bustamante C, Yoshimura A, Doi K, McCouch S. Evolutionary history of GS3, a gene conferring grain length in rice. Genetics. 182: 1323-34. PMID 19506305 DOI: 10.1534/Genetics.109.103002 |
0.329 |
|
| 2009 |
Xu Y, This D, Pausch RC, Vonhof WM, Coburn JR, Comstock JP, McCouch SR. Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 118: 1065-81. PMID 19224195 DOI: 10.1007/s00122-009-0963-z |
0.387 |
|
| 2009 |
McCouch S, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Moncada P, Xiao J, Coburn J, Fraker E, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, et al. Discovery and transfer of trait-enhancing alleles from wild species International Rice Research Notes. 31. DOI: 10.3860/Irrn.V31I2.1155 |
0.65 |
|
| 2009 |
Thomson MJ, Polato NR, Prasetiyono J, Trijatmiko KR, Silitonga TS, McCouch SR. Genetic diversity of isolated populations of Indonesian landraces of rice (Oryza sativa L.) collected in East Kalimantan on the Island of Borneo Rice. 2: 80-92. DOI: 10.1007/S12284-009-9023-1 |
0.616 |
|
| 2008 |
Kovach MJ, McCouch SR. Leveraging natural diversity: back through the bottleneck. Current Opinion in Plant Biology. 11: 193-200. PMID 18313975 DOI: 10.1016/J.Pbi.2007.12.006 |
0.796 |
|
| 2008 |
Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, et al. The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research. 36: D449-54. PMID 18194960 DOI: 10.1093/Nar/Gkm908 |
0.416 |
|
| 2008 |
Woo MO, Ham TH, Ji HS, Choi MS, Jiang W, Chu SH, Piao R, Chin JH, Kim JA, Park BS, Seo HS, Jwa NS, McCouch S, Koh HJ. Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.). The Plant Journal : For Cell and Molecular Biology. 54: 190-204. PMID 18182026 DOI: 10.1111/J.1365-313X.2008.03405.X |
0.375 |
|
| 2008 |
Xie X, Jin F, Song MH, Suh JP, Hwang HG, Kim YG, McCouch SR, Ahn SN. Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa x O. rufipogon cross. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 613-22. PMID 18092146 DOI: 10.1007/s00122-007-0695-x |
0.38 |
|
| 2008 |
Liang C, Jaiswal P, Hebbard C, Avraham S, Buckler ES, Casstevens T, Hurwitz B, McCouch S, Ni J, Pujar A, Ravenscroft D, Ren L, Spooner W, Tecle I, Thomason J, et al. Gramene: a growing plant comparative genomics resource. Nucleic Acids Research. 36: D947-53. PMID 17984077 DOI: 10.1093/Nar/Gkm968 |
0.829 |
|
| 2008 |
McCouch S. Toward a plant genomics initiative: thoughts on the value of cross-species and cross-genera comparisons in the grasses. Proceedings of the National Academy of Sciences of the United States of America. 95: 1983-5. PMID 9482819 DOI: 10.1073/Pnas.95.5.1983 |
0.465 |
|
| 2008 |
McCouch SR. Gene nomenclature system for rice Rice. 1: 72-84. DOI: 10.1007/s12284-008-9004-9 |
0.35 |
|
| 2007 |
Kovach MJ, Sweeney MT, McCouch SR. New insights into the history of rice domestication. Trends in Genetics : Tig. 23: 578-87. PMID 17963977 DOI: 10.1016/J.Tig.2007.08.012 |
0.787 |
|
| 2007 |
Mather KA, Caicedo AL, Polato NR, Olsen KM, McCouch S, Purugganan MD. The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics. 177: 2223-32. PMID 17947413 DOI: 10.1534/Genetics.107.079616 |
0.523 |
|
| 2007 |
Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD. Genome-wide patterns of nucleotide polymorphism in domesticated rice. Plos Genetics. 3: 1745-56. PMID 17907810 DOI: 10.1371/Journal.Pgen.0030163 |
0.349 |
|
| 2007 |
Sweeney MT, Thomson MJ, Cho YG, Park YJ, Williamson SH, Bustamante CD, McCouch SR. Global dissemination of a single mutation conferring white pericarp in rice. Plos Genetics. 3: e133. PMID 17696613 DOI: 10.1371/Journal.Pgen.0030133 |
0.54 |
|
| 2007 |
Sweeney M, McCouch S. The complex history of the domestication of rice. Annals of Botany. 100: 951-7. PMID 17617555 DOI: 10.1093/Aob/Mcm128 |
0.41 |
|
| 2007 |
Cho YI, Jiang W, Chin JH, Piao Z, Cho YG, McCouch S, Koh HJ. Identification of QTLs associated with physiological nitrogen use efficiency in rice. Molecules and Cells. 23: 72-9. PMID 17464214 |
0.413 |
|
| 2007 |
Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, et al. The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology. 143: 587-99. PMID 17142475 DOI: 10.1104/Pp.106.092825 |
0.321 |
|
| 2007 |
Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS, McCouch SR. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 559-68. PMID 17136372 DOI: 10.1007/S00122-006-0457-1 |
0.797 |
|
| 2007 |
Cho YG, Kang HJ, Lee JS, Lee YT, Lim SJ, Gauch H, Eun MY, McCouch SR. Identification of quantitative trait loci in rice for yield, yield components, and agronomic traits across years and locations Crop Science. 47: 2403-2417. DOI: 10.2135/Cropsci2006.08.0509 |
0.316 |
|
| 2007 |
Iyer-Pascuzzi AS, McCouch SR. Functional markers for xa5-mediated resistance in rice (Oryza sativa, L.) Molecular Breeding. 19: 291-296. DOI: 10.1007/s11032-006-9055-9 |
0.329 |
|
| 2007 |
McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Edwards J, Moncada P, Xiao J, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, et al. Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa Euphytica. 154: 317-339. DOI: 10.1007/S10681-006-9210-8 |
0.833 |
|
| 2006 |
Tang T, Lu J, Huang J, He J, McCouch SR, Shen Y, Kai Z, Purugganan MD, Shi S, Wu CI. Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. Plos Genetics. 2: e199. PMID 17112320 DOI: 10.1371/Journal.Pgen.0020199 |
0.395 |
|
| 2006 |
Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S. Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology. 142: 414-28. PMID 16905665 DOI: 10.1104/Pp.106.085720 |
0.373 |
|
| 2006 |
Xie X, Song MH, Jin F, Ahn SN, Suh JP, Hwang HG, McCouch SR. Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 113: 885-94. PMID 16850315 DOI: 10.1007/s00122-006-0348-5 |
0.373 |
|
| 2006 |
Ji HS, Chu SH, Jiang W, Cho YI, Hahn JH, Eun MY, McCouch SR, Koh HJ. Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes. Genetics. 173: 995-1005. PMID 16582442 DOI: 10.1534/genetics.105.054031 |
0.354 |
|
| 2006 |
Olsen KM, Caicedo AL, Polato N, McClung A, McCouch S, Purugganan MD. Selection under domestication: evidence for a sweep in the rice waxy genomic region. Genetics. 173: 975-83. PMID 16547098 DOI: 10.1534/Genetics.106.056473 |
0.408 |
|
| 2006 |
Thomson MJ, Edwards JD, Septiningsih EM, Harrington SE, McCouch SR. Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics. 172: 2501-14. PMID 16452146 DOI: 10.1534/Genetics.105.050500 |
0.818 |
|
| 2006 |
Sweeney MT, Thomson MJ, Pfeil BE, McCouch S. Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. The Plant Cell. 18: 283-94. PMID 16399804 DOI: 10.1105/Tpc.105.038430 |
0.661 |
|
| 2006 |
Jaiswal P, Ni J, Yap I, Ware D, Spooner W, Youens-Clark K, Ren L, Liang C, Zhao W, Ratnapu K, Faga B, Canaran P, Fogleman M, Hebbard C, Avraham S, ... ... McCouch S, et al. Gramene: a bird's eye view of cereal genomes. Nucleic Acids Research. 34: D717-23. PMID 16381966 DOI: 10.1093/Nar/Gkj154 |
0.817 |
|
| 2006 |
Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, et al. The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research. 16: 140-7. PMID 16344555 DOI: 10.1101/Gr.3766306 |
0.41 |
|
| 2005 |
Jaiswal P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Ware D, Zapata F. Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comparative and Functional Genomics. 6: 388-97. PMID 18629207 DOI: 10.1002/Cfg.496 |
0.387 |
|
| 2005 |
Xu Y, McCouch SR, Zhang Q. How can we use genomics to improve cereals with rice as a reference genome? Plant Molecular Biology. 59: 7-26. PMID 16217598 DOI: 10.1007/S11103-004-4681-2 |
0.419 |
|
| 2005 |
Zhang N, Xu Y, Akash M, McCouch S, Oard JH. Identification of candidate markers associated with agronomic traits in rice using discriminant analysis. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 110: 721-9. PMID 15678327 DOI: 10.1007/S00122-004-1898-Z |
0.533 |
|
| 2005 |
Garris AJ, Tai TH, Coburn J, Kresovich S, McCouch S. Genetic structure and diversity in Oryza sativa L. Genetics. 169: 1631-8. PMID 15654106 DOI: 10.1534/Genetics.104.035642 |
0.474 |
|
| 2005 |
Semon M, Nielsen R, Jones MP, McCouch SR. The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation. Genetics. 169: 1639-47. PMID 15545652 DOI: 10.1534/Genetics.104.033175 |
0.737 |
|
| 2004 |
Li J, Thomson M, McCouch SR. Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics. 168: 2187-95. PMID 15611185 DOI: 10.1534/Genetics.104.034165 |
0.613 |
|
| 2004 |
McCouch S. Diversifying selection in plant breeding. Plos Biology. 2: e347. PMID 15486582 DOI: 10.1371/Journal.Pbio.0020347 |
0.397 |
|
| 2004 |
Moncada P, McCouch S. Simple sequence repeat diversity in diploid and tetraploid Coffea species. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 47: 501-9. PMID 15190367 DOI: 10.1139/G03-129 |
0.454 |
|
| 2004 |
Edwards JD, Lee VM, McCouch SR. Sources and predictors of resolvable indel polymorphism assessed using rice as a model. Molecular Genetics and Genomics : Mgg. 271: 298-307. PMID 14758543 DOI: 10.1007/s00438-004-0979-7 |
0.644 |
|
| 2004 |
Xu Y, Beachell H, McCouch SR. A Marker-Based Approach to Broadening the Genetic Base of Rice in the USA Crop Science. 44: 1947-1959. DOI: 10.2135/cropsci2004.1947 |
0.321 |
|
| 2004 |
Cho Y, Park C, Kwon S, Chin J, Ji H, Park K, McCouch S, Koh H. Key DNA Markers for Predicting Heterosis in F1 Hybrids of japonica Rice Breeding Science. 54: 389-397. DOI: 10.1270/Jsbbs.54.389 |
0.424 |
|
| 2003 |
Yap IV, Schneider D, Kleinberg J, Matthews D, Cartinhour S, McCouch SR. A graph-theoretic approach to comparing and integrating genetic, physical and sequence-based maps. Genetics. 165: 2235-47. PMID 14704199 |
0.782 |
|
| 2003 |
Garris AJ, McCouch SR, Kresovich S. Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics. 165: 759-69. PMID 14573486 |
0.421 |
|
| 2003 |
Septiningsih EM, Trijatmiko KR, Moeljopawiro S, McCouch SR. Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 1433-41. PMID 14513216 DOI: 10.1007/S00122-003-1376-Z |
0.713 |
|
| 2003 |
Septiningsih EM, Prasetiyono J, Lubis E, Tai TH, Tjubaryat T, Moeljopawiro S, McCouch SR. Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 1419-32. PMID 14513215 DOI: 10.1007/S00122-003-1373-2 |
0.756 |
|
| 2003 |
Thomson MJ, Tai TH, McClung AM, Lai XH, Hinga ME, Lobos KB, Xu Y, Martinez CP, McCouch SR. Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 479-93. PMID 12736777 DOI: 10.1007/S00122-003-1270-8 |
0.688 |
|
| 2003 |
Blair MW, Garris AJ, Iyer AS, Chapman B, Kresovich S, McCouch SR. High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 62-73. PMID 12677405 DOI: 10.1007/S00122-003-1231-2 |
0.374 |
|
| 2002 |
Jaiswal P, Ware D, Ni J, Chang K, Zhao W, Schmidt S, Pan X, Clark K, Teytelman L, Cartinhour S, Stein L, McCouch S. Gramene: development and integration of trait and gene ontologies for rice. Comparative and Functional Genomics. 3: 132-6. PMID 18628886 DOI: 10.1002/Cfg.156 |
0.532 |
|
| 2002 |
McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, et al. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) (supplement). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 9: 257-79. PMID 12597280 DOI: 10.1093/Dnares/9.6.257 |
0.317 |
|
| 2002 |
McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, et al. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 9: 199-207. PMID 12597276 DOI: 10.1093/Dnares/9.6.199 |
0.412 |
|
| 2002 |
Blair MW, Hedetale V, McCouch SR. Fluorescent-labeled microsatellite panels useful for detecting allelic diversity in cultivated rice ( Oryza sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 105: 449-457. PMID 12582550 DOI: 10.1007/s00122-002-0921-5 |
0.439 |
|
| 2002 |
Ware DH, Jaiswal P, Ni J, Yap IV, Pan X, Clark KY, Teytelman L, Schmidt SC, Zhao W, Chang K, Cartinhour S, Stein LD, McCouch SR. Gramene, a tool for grass genomics. Plant Physiology. 130: 1606-13. PMID 12481044 DOI: 10.1104/Pp.015248 |
0.824 |
|
| 2002 |
Chen X, Cho YG, McCouch SR. Sequence divergence of rice microsatellites in Oryza and other plant species. Molecular Genetics and Genomics : Mgg. 268: 331-43. PMID 12436255 DOI: 10.1007/s00438-002-0739-5 |
0.407 |
|
| 2002 |
Leach J, McCouch S, Slezak T, Sasaki T, Wessler S. Why finishing the rice genome matters. Science (New York, N.Y.). 296: 45. PMID 11962488 DOI: 10.1126/Science.296.5565.45B |
0.357 |
|
| 2002 |
Goldberg D, McCouch S, Kleinberg J. Constructing comparative genome maps with unresolved marker order. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 139-50. PMID 11928470 |
0.332 |
|
| 2002 |
Ware D, Jaiswal P, Ni J, Pan X, Chang K, Clark K, Teytelman L, Schmidt S, Zhao W, Cartinhour S, McCouch S, Stein L. Gramene: a resource for comparative grass genomics. Nucleic Acids Research. 30: 103-5. PMID 11752266 DOI: 10.1093/Nar/30.1.103 |
0.526 |
|
| 2002 |
Renganayaki K, Fritz AK, Sadasivam S, Pammi S, Harrington SE, McCouch SR, Kumar SM, Reddy AS. Mapping and Progress toward Map-Based Cloning of Brown Planthopper Biotype-4 Resistance Gene Introgressed from Oryza officinalis
into Cultivated Rice, O. sativa Crop Science. 42: 2112-2117. DOI: 10.2135/Cropsci2002.2112 |
0.373 |
|
| 2001 |
Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Research. 11: 1441-52. PMID 11483586 DOI: 10.1101/Gr.184001 |
0.46 |
|
| 2001 |
Ishii T, Xu Y, McCouch SR. Nuclear- and chloroplast-microsatellite variation in A-genome species of rice Genome. 44: 658-666. DOI: 10.1139/g01-044 |
0.311 |
|
| 2001 |
Moncada P, Martínez CP, Borrero J, Chatel M, Gauch Jr H, Guimaraes E, Tohme J, McCouch SR. Quantitative trait loci for yield and yield components in an Oryza sativa×Oryza rufipogon BC2F2 population evaluated in an upland environment Theoretical and Applied Genetics. 102: 41-52. DOI: 10.1007/S001220051616 |
0.505 |
|
| 2000 |
Basu D, Dehesh K, Schneider-Poetsch HJ, Harrington SE, McCouch SR, Quail PH. Rice PHYC gene: structure, expression, map position and evolution. Plant Molecular Biology. 44: 27-42. PMID 11094977 DOI: 10.1023/A:1006488119301 |
0.336 |
|
| 2000 |
Maheswaran M, Huang N, Sreerangasamy SR, McCouch SR. Mapping quantitative trait loci associated with days to flowering and photoperiod sensitivity in rice (Oryza sativa L.) Molecular Breeding. 6: 145-155. DOI: 10.1023/A:1009618621720 |
0.382 |
|
| 2000 |
Cho YG, Ishii T, Temnykh S, Chen X, Lipovich L, McCouch SR, Park WD, Ayres N, Cartinhour S. Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.) Theoretical and Applied Genetics. 100: 713-722. DOI: 10.1007/S001220051343 |
0.419 |
|
| 2000 |
Temnykh S, Park WD, Ayres N, Cartinhour S, Hauck N, Lipovich L, Cho YG, Ishii T, McCouch SR. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.) Theoretical and Applied Genetics. 100: 697-712. DOI: 10.1007/S001220051342 |
0.4 |
|
| 1999 |
McCouch S. Wild Alleles for Crop Improvement Nature Biotechnology. 17: 32-32. DOI: 10.1038/70392 |
0.383 |
|
| 1999 |
Xue Q, Edoh K, Li H, Zhang N, Yan J, McCouch S, Earle ED. Euphytica. 105: 167-172. DOI: 10.1023/A:1003442100236 |
0.325 |
|
| 1999 |
Blair MW, McCouch SR, Panaud O. Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.) Theoretical and Applied Genetics. 98: 780-792. DOI: 10.1007/s001220051135 |
0.371 |
|
| 1998 |
Xu Y, Shen L, McCouch SR, Zhu L. Extension of the rice DH population genetic map with microsatellite markers Chinese Science Bulletin. 43: 149-153. DOI: 10.1007/BF02883931 |
0.389 |
|
| 1997 |
Olufowote JO, Xu Y, Chen X, Park WD, Beachell HM, Dilday RH, Goto M, McCouch SR. Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 40: 370-8. PMID 9202415 DOI: 10.1139/G97-050 |
0.404 |
|
| 1997 |
Williams CE, Yanagihara S, McCouch SR, Mackill DJ, Ronald PC. Predicting Success of Indica/Japonica Crosses in Rice, Based on a PCR Marker for the S‐5n Allele at a Hybrid‐Sterility Locus Crop Science. 37: 1910-1912. DOI: 10.2135/Cropsci1997.0011183X003700060040X |
0.375 |
|
| 1997 |
Huang N, Parco A, Mew T, Magpantay G, McCouch S, Guiderdoni E, Xu J, Subudhi P, Angeles ER, Khush GS. Molecular Breeding. 3: 105-113. DOI: 10.1023/A:1009683603862 |
0.481 |
|
| 1997 |
Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.) Theoretical and Applied Genetics. 95: 553-567. DOI: 10.1007/s001220050596 |
0.326 |
|
| 1997 |
Blair MW, McCouch SR. Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5 Theoretical and Applied Genetics. 95: 174-184. DOI: 10.1007/s001220050545 |
0.359 |
|
| 1997 |
Harrington SE, Bligh HFJ, Park WD, Jones CA, McCouch SR. Linkage mapping of starch branching enzyme III in rice (Oryza sativa L.) and prediction of location of orthologous genes in other grasses Theoretical and Applied Genetics. 94: 564-568. DOI: 10.1007/S001220050452 |
0.358 |
|
| 1996 |
Xiao J, Li J, Yuan L, McCouch SR, Tanksley SD. Genetic diversity and its relationship to hybrid performance and heterosis in rice as revealed by PCR-based markers. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 92: 637-43. PMID 24166385 DOI: 10.1007/BF00226083 |
0.405 |
|
| 1996 |
Panaud O, Chen X, McCouch SR. Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Molecular & General Genetics : Mgg. 252: 597-607. PMID 8914521 DOI: 10.1007/BF02172406 |
0.458 |
|
| 1996 |
Lilley J, Ludlow MM, McCouch S, O'Toole J. Locating QTL for osmotic adjustment and dehydration tolerance in rice Journal of Experimental Botany. 47: 1427-1436. DOI: 10.1093/jxb/47.9.1427 |
0.315 |
|
| 1995 |
Yu ZH, McCouch SR, Tanksley SD, Kinoshita T, Sato S. Association of morphological and RFLP markers in rice (Oryza sativa L.). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 38: 566-74. PMID 18470190 DOI: 10.1139/g95-073 |
0.302 |
|
| 1995 |
Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME. Comparative mapping in grasses. Wheat relationships. Molecular & General Genetics : Mgg. 248: 744-54. PMID 7476878 DOI: 10.1007/BF02191715 |
0.341 |
|
| 1994 |
Abenes MLP, Tabien RE, McCouch SR, Ikeda R, Ronald P, Khush GS, Huang N. Orientation and integration of the classical and molecular genetic maps of chromosome 11 in rice Euphytica. 76: 81-87. DOI: 10.1007/BF00024023 |
0.318 |
|
| 1992 |
Ronald PC, Albano B, Tabien R, Abenes L, Wu Ks, McCouch S, Tanksley SD. Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21 Mgg Molecular & General Genetics. 236: 113-120. PMID 1362973 DOI: 10.1007/Bf00279649 |
0.435 |
|
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