Patricia J. Kiley - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Microbiology Biology

76 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Banerjee R, Weisenhorn E, Schwartz KJ, Myers KS, Glasner JD, Perna NT, Coon JJ, Welch RA, Kiley PJ. Tailoring a Global Iron Regulon to a Uropathogen. Mbio. 11. PMID 32209682 DOI: 10.1128/mBio.00351-20  0.56
2019 Corless EI, Mettert EL, Kiley PJ, Antony E. Elevated Expression of a Functional Suf Pathway in BL21(DE3) Enhances Recombinant Production of an Iron-Sulfur Cluster Protein. Journal of Bacteriology. PMID 31712282 DOI: 10.1128/JB.00496-19  1
2019 Carey JN, Mettert EL, Fishman-Engel DR, Roggiani M, Kiley PJ, Goulian M. Phage integration alters the respiratory strategy of its host. Elife. 8. PMID 31650957 DOI: 10.7554/eLife.49081  1
2018 Carey JN, Mettert EL, Roggiani M, Myers KS, Kiley PJ, Goulian M. Regulated Stochasticity in a Bacterial Signaling Network Permits Tolerance to a Rapid Environmental Change. Cell. 175: 1989-1990. PMID 30550792 DOI: 10.1016/j.cell.2018.11.051  1
2018 Carey JN, Mettert EL, Roggiani M, Myers KS, Kiley PJ, Goulian M. Regulated Stochasticity in a Bacterial Signaling Network Permits Tolerance to a Rapid Environmental Change. Cell. PMID 29502970 DOI: 10.1016/j.cell.2018.02.005  1
2017 Beauchene NA, Mettert EL, Moore LJ, Keleş S, Willey ER, Kiley PJ. O2 availability impacts iron homeostasis in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087312 DOI: 10.1073/pnas.1707189114  1
2017 Mettert EL, Kiley P. Reassessing the structure and function relationship of the O2-sensing transcription factor FNR. Antioxidants & Redox Signaling. PMID 28990402 DOI: 10.1089/ars.2017.7365  1
2015 Beauchene NA, Myers KS, Chung D, Park DM, Weisnicht AM, Keleş S, Kiley PJ. Impact of Anaerobiosis on Expression of the Iron-Responsive Fur and RyhB Regulons. Mbio. 6. PMID 26670385 DOI: 10.1128/mBio.01947-15  1
2015 Mettert EL, Kiley PJ. How Is Fe-S Cluster Formation Regulated? Annual Review of Microbiology. 69: 505-26. PMID 26488283 DOI: 10.1146/annurev-micro-091014-104457  1
2015 Myers KS, Park DM, Beauchene NA, Kiley PJ. Defining bacterial regulons using ChIP-seq. Methods (San Diego, Calif.). PMID 26032817 DOI: 10.1016/j.ymeth.2015.05.022  1
2015 Tolla DA, Kiley PJ, Lomnitz JG, Savageau MA. Design principles of a conditional futile cycle exploited for regulation. Molecular Biosystems. 11: 1841-9. PMID 25851148 DOI: 10.1039/c5mb00055f  1
2015 Mettert EL, Kiley PJ. Fe-S proteins that regulate gene expression. Biochimica Et Biophysica Acta. 1853: 1284-93. PMID 25450978 DOI: 10.1016/j.bbamcr.2014.11.018  1
2014 Mettert EL, Kiley PJ. Coordinate regulation of the Suf and Isc Fe-S cluster biogenesis pathways by IscR is essential for viability of Escherichia coli. Journal of Bacteriology. 196: 4315-23. PMID 25266384 DOI: 10.1128/JB.01975-14  1
2014 Park DM, Kiley PJ. The influence of repressor DNA binding site architecture on transcriptional control. Mbio. 5: e01684-14. PMID 25161193 DOI: 10.1128/mBio.01684-14  1
2014 Miller HK, Kwuan L, Schwiesow L, Bernick DL, Mettert E, Ramirez HA, Ragle JM, Chan PP, Kiley PJ, Lowe TM, Auerbuch V. IscR is essential for yersinia pseudotuberculosis type III secretion and virulence. Plos Pathogens. 10: e1004194. PMID 24945271 DOI: 10.1371/journal.ppat.1004194  1
2014 Haft RJ, Keating DH, Schwaegler T, Schwalbach MS, Vinokur J, Tremaine M, Peters JM, Kotlajich MV, Pohlmann EL, Ong IM, Grass JA, Kiley PJ, Landick R. Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 111: E2576-85. PMID 24927582 DOI: 10.1073/pnas.1401853111  1
2013 Park DM, Akhtar MS, Ansari AZ, Landick R, Kiley PJ. The Bacterial Response Regulator ArcA Uses a Diverse Binding Site Architecture to Regulate Carbon Oxidation Globally Plos Genetics. 9. PMID 24146625 DOI: 10.1371/journal.pgen.1003839  1
2013 Chung D, Park D, Myers K, Grass J, Kiley P, Landick R, Keleş S. dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data. Plos Computational Biology. 9: e1003246. PMID 24146601 DOI: 10.1371/journal.pcbi.1003246  1
2013 Babujee L, Balakrishnan V, Kiley PJ, Glasner JD, Perna NT. Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909). Plos One. 8: e76567. PMID 24116118 DOI: 10.1371/journal.pone.0076567  1
2013 Myers KS, Yan H, Ong IM, Chung D, Liang K, Tran F, KeleÅŸ S, Landick R, Kiley PJ. Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding. Plos Genetics. 9: e1003565. PMID 23818864 DOI: 10.1371/journal.pgen.1003565  1
2013 Rajagopalan S, Teter SJ, Zwart PH, Brennan RG, Phillips KJ, Kiley PJ. Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity. Nature Structural & Molecular Biology. 20: 740-7. PMID 23644595 DOI: 10.1038/nsmb.2568  1
2013 Giel JL, Nesbit AD, Mettert EL, Fleischhacker AS, Wanta BT, Kiley PJ. Regulation of iron-sulphur cluster homeostasis through transcriptional control of the Isc pathway by [2Fe-2S]-IscR in Escherichia coli. Molecular Microbiology. 87: 478-92. PMID 23075318 DOI: 10.1111/mmi.12052  1
2012 Nesbit AD, Fleischhacker AS, Teter SJ, Kiley PJ. ArcA and AppY antagonize IscR repression of hydrogenase-1 expression under anaerobic conditions, revealing a novel mode of O2 regulation of gene expression in Escherichia coli. Journal of Bacteriology. 194: 6892-9. PMID 23065979 DOI: 10.1128/JB.01757-12  1
2012 Fleischhacker AS, Stubna A, Hsueh KL, Guo Y, Teter SJ, Rose JC, Brunold TC, Markley JL, Münck E, Kiley PJ. Characterization of the [2Fe-2S] cluster of Escherichia coli transcription factor IscR. Biochemistry. 51: 4453-62. PMID 22583201 DOI: 10.1021/bi3003204  1
2012 Babujee L, Apodaca J, Balakrishnan V, Liss P, Kiley PJ, Charkowski AO, Glasner JD, Perna NT. Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria. Bmc Genomics. 13: 110. PMID 22439737 DOI: 10.1186/1471-2164-13-110  1
2012 Schwalbach MS, Keating DH, Tremaine M, Marner WD, Zhang Y, Bothfeld W, Higbee A, Grass JA, Cotten C, Reed JL, da Costa Sousa L, Jin M, Balan V, Ellinger J, Dale B, ... Kiley PJ, et al. Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen. Applied and Environmental Microbiology. 78: 3442-57. PMID 22389370 DOI: 10.1128/AEM.07329-11  1
2011 Dietrich LE, Kiley PJ. A shared mechanism of SoxR activation by redox-cycling compounds. Molecular Microbiology. 79: 1119-22. PMID 21338412 DOI: 10.1111/j.1365-2958.2011.07552.x  1
2011 Fleischhacker AS, Kiley PJ. Iron-containing transcription factors and their roles as sensors. Current Opinion in Chemical Biology. 15: 335-41. PMID 21292540 DOI: 10.1016/j.cbpa.2011.01.006  1
2010 Dufour YS, Kiley PJ, Donohue TJ. Reconstruction of the core and extended regulons of global transcription factors. Plos Genetics. 6: e1001027. PMID 20661434 DOI: 10.1371/journal.pgen.1001027  1
2010 Wassarman KM, Kiley PJ. Global approaches for finding small RNA and small open reading frame functions. Journal of Bacteriology. 192: 26-8. PMID 19854892 DOI: 10.1128/JB.01316-09  1
2009 Yan A, Kiley PJ. Techniques to isolate O2-sensitive proteins: [4Fe-4S]-FNR as an example. Methods in Enzymology. 463: 787-805. PMID 19892202 DOI: 10.1016/S0076-6879(09)63042-1  1
2009 Nesbit AD, Giel JL, Rose JC, Kiley PJ. Sequence-specific binding to a subset of IscR-regulated promoters does not require IscR Fe-S cluster ligation. Journal of Molecular Biology. 387: 28-41. PMID 19361432 DOI: 10.1016/j.jmb.2009.01.055  1
2008 Mettert EL, Outten FW, Wanta B, Kiley PJ. The Impact of O2 on the Fe-S Cluster Biogenesis Requirements of Escherichia coli FNR Journal of Molecular Biology. 384: 798-811. PMID 18938178 DOI: 10.1016/j.jmb.2008.09.080  1
2008 Yan A, Kiley PJ. Dissecting the role of the N-terminal region of the Escherichia coli global transcription factor FNR. Journal of Bacteriology. 190: 8230-3. PMID 18931113 DOI: 10.1128/JB.01242-08  1
2008 Bender RA, Downs D, Kiley P, LaRossa RA, Sonenshein AL, Storz G, Bender R, Roth J, Schilling C, Rine's J, Merrick M, Tyson G, Skovran E, Liao J, Stephanopolous' G, et al. Bridges cnd Chasms: Summary of the IMAGE 2 meeting in Montreal, Canada, 30 April to 3 May 2007 Journal of Bacteriology. 190: 792-797. PMID 17827302 DOI: 10.1128/JB.01097-07  1
2008 Popescu VC, Bates DM, Beinert H, Munck E, Kiley PJ. Mössbauer studies of the FNR transcription factor in whole Escherichia coli cells Iron Metabolism: Inorganic Biochemistry and Regulatory Mechanisms. 153-160. DOI: 10.1002/9783527613700.ch09  1
2007 Yoon SS, Karabulut AC, Lipscomb JD, Hennigan RF, Lymar SV, Groce SL, Herr AB, Howell ML, Kiley PJ, Schurr MJ, Gaston B, Choi KH, Schweizer HP, Hassett DJ. Two-pronged survival strategy for the major cystic fibrosis pathogen, Pseudomonas aeruginosa, lacking the capacity to degrade nitric oxide during anaerobic respiration. The Embo Journal. 26: 3662-72. PMID 17627281 DOI: 10.1038/sj.emboj.7601787  1
2007 Mettert EL, Kiley PJ. Contributions of [4Fe-4S]-FNR and integration host factor to fnr transcriptional regulation. Journal of Bacteriology. 189: 3036-43. PMID 17293415 DOI: 10.1128/JB.00052-07  1
2006 Moore LJ, Mettert EL, Kiley PJ. Regulation of FNR dimerization by subunit charge repulsion. The Journal of Biological Chemistry. 281: 33268-75. PMID 16959764 DOI: 10.1074/jbc.M608331200  1
2006 Giel JL, Rodionov D, Liu M, Blattner FR, Kiley PJ. IscR-dependent gene expression links iron-sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli Molecular Microbiology. 60: 1058-1075. PMID 16677314 DOI: 10.1111/j.1365-2958.2006.05160.x  1
2005 Mettert EL, Kiley PJ. ClpXP-dependent proteolysis of FNR upon loss of its O2-sensing [4Fe-4S] cluster. Journal of Molecular Biology. 354: 220-32. PMID 16243354 DOI: 10.1016/j.jmb.2005.09.066  1
2005 Weber KD, Vincent OD, Kiley PJ. Additional determinants within Escherichia coli FNR activating region 1 and RNA polymerase alpha subunit required for transcription activation. Journal of Bacteriology. 187: 1724-31. PMID 15716444 DOI: 10.1128/JB.187.5.1724-1731.2005  1
2005 Kang Y, Weber KD, Qiu Y, Kiley PJ, Blattner FR. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function Journal of Bacteriology. 187: 1135-1160. PMID 15659690 DOI: 10.1128/JB.187.3.1135-1160.2005  1
2004 Kiley PJ, Storz G. Exploiting thiol modifications. Plos Biology. 2: e400. PMID 15547642 DOI: 10.1371/journal.pbio.0020400  1
2004 Sutton VR, Mettert EL, Beinert H, Kiley PJ. Kinetic analysis of the oxidative conversion of the [4Fe-4S]2+ cluster of FNR to a [2Fe-2S]2+ Cluster. Journal of Bacteriology. 186: 8018-25. PMID 15547274 DOI: 10.1128/JB.186.23.8018-8025.2004  1
2004 Sutton VR, Stubna A, Patschkowski T, Münck E, Beinert H, Kiley PJ. Superoxide destroys the [2Fe-2S]2+ cluster of FNR from Escherichia coli. Biochemistry. 43: 791-8. PMID 14730984 DOI: 10.1021/bi0357053  1
2003 Sutton VR, Kiley PJ. Techniques for studying the oxygen-sensitive transcription factor FNR from Escherichia coli. Methods in Enzymology. 370: 300-12. PMID 14712655 DOI: 10.1016/S0076-6879(03)70027-5  1
2003 Kiley PJ, Beinert H. The role of Fe-S proteins in sensing and regulation in bacteria. Current Opinion in Microbiology. 6: 181-5. PMID 12732309 DOI: 10.1016/S1369-5274(03)00039-0  1
2002 Lamberg KE, Luther C, Weber KD, Kiley PJ. Characterization of activating region 3 from Escherichia coli FNR. Journal of Molecular Biology. 315: 275-83. PMID 11786011 DOI: 10.1006/jmbi.2001.5241  1
2001 Schwartz CJ, Giel JL, Patschkowski T, Luther C, Ruzicka FJ, Beinert H, Kiley PJ. IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins. Proceedings of the National Academy of Sciences of the United States of America. 98: 14895-900. PMID 11742080 DOI: 10.1073/pnas.251550898  1
2001 Moore LJ, Kiley PJ. Characterization of the Dimerization Domain in the FNR Transcription Factor Journal of Biological Chemistry. 276: 45744-45750. PMID 11581261 DOI: 10.1074/jbc.M106569200  1
2000 Lamberg KE, Kiley PJ. FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3. Molecular Microbiology. 38: 817-27. PMID 11115116 DOI: 10.1046/j.1365-2958.2000.02172.x  1
2000 Schwartz CJ, Djaman O, Imlay JA, Kiley PJ. The cysteine desulfurase, IscS, has a major role in in vivo Fe-S cluster formation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 97: 9009-14. PMID 10908675 DOI: 10.1073/pnas.160261497  1
2000 Bates DM, Popescu CV, Khoroshilova N, Vogt K, Beinert H, Münck E, Kiley PJ. Substitution of leucine 28 with histidine in the Escherichia coli transcription factor FNR results in increased stability of the [4Fe-4S](2+) cluster to oxygen. The Journal of Biological Chemistry. 275: 6234-40. PMID 10692418 DOI: 10.1074/jbc.275.9.6234  1
1999 Beinert H, Kiley PJ. Fe-S proteins in sensing and regulatory functions. Current Opinion in Chemical Biology. 3: 152-7. PMID 10226040 DOI: 10.1016/S1367-5931(99)80027-1  1
1998 Kiley PJ, Beinert H. Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster. Fems Microbiology Reviews. 22: 341-52. PMID 9990723 DOI: 10.1016/S0168-6445(98)00022-9  1
1998 Popescu CV, Bates DM, Beinert H, Münck E, Kiley PJ. Mössbauer spectroscopy as a tool for the study of activation/inactivation of the transcription regulator FNR in whole cells of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 95: 13431-5. PMID 9811817 DOI: 10.1073/pnas.95.23.13431  1
1998 Darwin AJ, Ziegelhoffer EC, Kiley PJ, Stewart V. Fnr, NarP, and NarL regulation of Escherichia coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro Journal of Bacteriology. 180: 4192-4198. PMID 9696769  1
1997 Khoroshilova N, Popescu C, Münck E, Beinert H, Kiley PJ. Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity. Proceedings of the National Academy of Sciences of the United States of America. 94: 6087-92. PMID 9177174 DOI: 10.1073/pnas.94.12.6087  1
1996 Beinert H, Kiley P. Redox control of gene expression involving iron-sulfur proteins. Change of oxidation-state or assembly/disassembly of Fe-S clusters? Febs Letters. 382: 218-9; discussion 22. PMID 8612757  1
1996 Lazazzera BA, Beinert H, Khoroshilova N, Kennedy MC, Kiley PJ. DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen. The Journal of Biological Chemistry. 271: 2762-8. PMID 8576252 DOI: 10.1074/jbc.271.5.2762  1
1995 Ziegelhoffer EC, Kiley PJ. In vitro analysis of a constitutively active mutant form of the Escherichia coli global transcription factor FNR Journal of Molecular Biology. 245: 351-361. PMID 7837268 DOI: 10.1006/jmbi.1994.0029  1
1995 Khoroshilova N, Beinert H, Kiley PJ. Association of a polynuclear iron-sulfur center with a mutant FNR protein enhances DNA binding. Proceedings of the National Academy of Sciences of the United States of America. 92: 2499-503. PMID 7708673 DOI: 10.1073/pnas.92.7.2499  1
1995 Bates DM, Lazazzera BA, Kiley PJ. Characterization of FNR* mutant proteins indicates two distinct mechanisms for altering oxygen regulation of the Escherichia coli transcription factor FNR Journal of Bacteriology. 177: 3972-3978. PMID 7608069  1
1993 Lazazzera BA, Bates DM, Kiley PJ. The activity of the Escherichia coli transcription factor FNR is regulated by a change in oligomeric state Genes and Development. 7: 1993-2005. PMID 8406003  1
1991 Kiley PJ, Reznikoff WS. Fnr mutants that activate gene expression in the presence of oxygen. Journal of Bacteriology. 173: 16-22. PMID 1898918  1
1989 Lee JK, Kiley PJ, Kaplan S. Posttranscriptional control of puc operon expression of B800-850 light-harvesting complex formation in Rhodobacter sphaeroides Journal of Bacteriology. 171: 3391-3405. PMID 2470727  1
1988 Kiley PJ, Kaplan S. Molecular genetics of photosynthetic membrane biosynthesis in Rhodobacter sphaeroides Microbiological Reviews. 52: 50-69. PMID 3280966  1
1988 Kiley PJ, Varga A, Kaplan S. Physiological and structural analysis of light-harvesting mutants of Rhodobacter sphaeroides Journal of Bacteriology. 170: 1103-1115. PMID 3277945  1
1988 Donohue TJ, Kiley PJ, Kaplan S. The puf operon region of Rhodobacter sphaeroides Photosynthesis Research. 19: 39-61. DOI: 10.1007/BF00114568  1
1987 Jackson WJ, Kiley PJ, Haith CE, Kaplan S, Prince RC. On the role of the light-harvesting B880 in the correct insertion of the reaction center of Rhodobacter capsulatus and Rhodobacter sphaeroides Febs Letters. 215: 171-174. PMID 3552732 DOI: 10.1016/0014-5793(87)80135-7  1
1987 Kiley PJ, Kaplan S. Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides light-harvesting B800-850-α and B800-850-β genes Journal of Bacteriology. 169: 3268-3275. PMID 3036782 DOI: 10.1128/jb.169.7.3268-3275.1987  1
1987 Kiley PJ, Donohue TJ, Havelka WA, Kaplan S. DNA sequence and in vitro expression of the B875 light-harvesting polypeptides of Rhodobacter sphaeroides Journal of Bacteriology. 169: 742-750. PMID 3027044  1
1986 Yu Sheng Zhu, Kiley PJ, Donohue TJ, Kaplan S. Origin of the mRNA stoichiometry of the puf operon in Rhodobacter sphaeroides Journal of Biological Chemistry. 261: 10366-10374. PMID 2426264  1
1985 Meinhardt SW, Kiley PJ, Kaplan S, Crofts AR, Harayama S. Characterization of light-harvesting mutants of Rhodopseudomonas sphaeroides. I. Measurement of the efficiency of energy transfer from light-harvesting complexes to the reaction center. Archives of Biochemistry and Biophysics. 236: 130-9. PMID 3881081 DOI: 10.1016/0003-9861(85)90612-5  1
1984 Kiley PJ, Kaplan S. Identification of polypeptides within the two light-harvesting complexes of Rhodopseudomonas sphaeroides Federation Proceedings. 43.  1
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